Rroxscaffold_6G00397510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000336
Physical Location & Seq
Forward (+)
19195381 .. 19199159
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397510.1

Sequence Viewer

Length: 405 bp
ATGGTGGATGATGATGTCAATGTAGCTACGAACTTCTCTTTGAGAATTCGTATGGGCATTGTAGGGACCGTGGCTTGCCTAACTATGTTGGATTGCCCTACGCTGGTCCGTCGCTACCTCGGGGGTGGTCCAAGCTGCTGCACCGCTTACGCAAGTGCAATATGGAGTAGCCTTTGGCTAAGGTTCAAACTGTTCCTACGCCCGCCTTATGTTCTCGATGTCGTGCCACCAACACTATCTATGACGATGTTTGATGGTCCTCCGGTGGCATCACCGAGGACACACAAGACTATTACTATCCACAAGTTTGATTATCATGTTGCTATGGTAATGGCTGTTAATGGAGTGATGAGGAAGAGAGATGGGGTGATAATTTGTCGCCCAAGAAACCGAGGCCTAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

9.72

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 203
AcsI RAATTY 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 187
AluBI AGCT 2 cut(s) 26, 135
AluI AGCT 2 cut(s) 26, 135
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 135, 138
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 4 cut(s) 66, 106, 128, 257
AsuHPI GGTGA 2 cut(s) 264, 379
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 4 cut(s) 66, 106, 128, 257
BbvI GCAGC 2 cut(s) 122, 125
BccI CCATC 2 cut(s) 248, 356
BfaI CTAG 2 cut(s) 398, 403
BisI GCNGC 2 cut(s) 136, 139
BlsI GCNGC 2 cut(s) 137, 140
Bme18I GGWCC 4 cut(s) 66, 106, 128, 257
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 4 cut(s) 66, 106, 128, 257
BmiI GGNNCC 1 cut(s) 67
BmsI GCATC 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 69, 118, 275, 391
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseDI CCNNGG 4 cut(s) 69, 118, 275, 391
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 122, 125
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 119
BspACI CCGC 2 cut(s) 144, 203
BspANI GGCC 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 67
BssECI CCNNGG 4 cut(s) 69, 118, 275, 391
Bst4CI ACNGT 2 cut(s) 70, 192
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 76, 203
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 122, 125
BsuRI GGCC 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 76, 203
Cfr13I GGNCC 4 cut(s) 66, 106, 128, 257
CviAII CATG 1 cut(s) 317
CviJI RGCY 8 cut(s) 26, 74, 135, 171, 178, 335, 396, 401
CviKI_1 RGCY 8 cut(s) 26, 74, 135, 171, 178, 335, 396, 401
DdeI CTNAG 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco147I AGGCCT 1 cut(s) 396
Eco47I GGWCC 4 cut(s) 66, 106, 128, 257
Eco88I CYCGRG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 45
FaeI CATG 1 cut(s) 320
FaiI YATR 7 cut(s) 53, 86, 163, 210, 242, 318, 326
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 316
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 136, 139
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 136, 139
FspBI CTAG 2 cut(s) 398, 403
GluI GCNGC 2 cut(s) 136, 139
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 320
HpaII CCGG 1 cut(s) 263
HphI GGTGA 2 cut(s) 264, 379
Hpy188III TCNNGA 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 70, 192
HpyCH4V TGCA 2 cut(s) 141, 158
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 320
LpnPI CCDG 2 cut(s) 89, 276
Lsp1109I GCAGC 2 cut(s) 122, 125
LweI GCATC 1 cut(s) 278
MaeI CTAG 2 cut(s) 398, 403
MboII GAAGA 1 cut(s) 367
MluCI AATT 2 cut(s) 45, 372
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 5 cut(s) 128, 270, 270, 345, 386
MseI TTAA 1 cut(s) 339
MspI CCGG 1 cut(s) 263
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 1 cut(s) 67
PceI AGGCCT 1 cut(s) 396
PkrI GCNGC 2 cut(s) 137, 140
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 4 cut(s) 66, 106, 128, 257
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 136, 139
Sau96I GGNCC 4 cut(s) 66, 106, 128, 257
SetI ASST 4 cut(s) 28, 120, 137, 185
SfaNI GCATC 1 cut(s) 278
SinI GGWCC 4 cut(s) 66, 106, 128, 257
Sse9I AATT 2 cut(s) 45, 372
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 2 cut(s) 144, 203
SspMI CTAG 2 cut(s) 398, 403
StuI AGGCCT 1 cut(s) 396
TaaI ACNGT 2 cut(s) 70, 192
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 45, 372
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 2 cut(s) 135, 138
TspGWI ACGGA 1 cut(s) 98
VpaK11BI GGWCC 4 cut(s) 66, 106, 128, 257
XapI RAATTY 1 cut(s) 45
XspI CTAG 2 cut(s) 398, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.