RLG00000024265

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000336
Physical Location & Seq
Forward (+)
33685967 .. 33688852
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024265

Sequence Viewer

Length: 603 bp
ATGGAGATAGCAGGGGTGACAGCTGGTAGTCAGGACCAGGGCCATACTGATGTTGGTATGGATGGTGAAGGGATGCAGGAGCAGGCGCTGGTTGTGCAGGGGGAGTTGGAGCAGGGTCAGTCATCAAGTTCTGTTAGTCAGGTGGCTGAGAAACAAGCTGAGCTGGACCAGGCTTTGGTACCAGTGACTACTCGTCACCGGAAACGTGATGAAGTAGATGGGAGCCTGGATCCTACTTCTCTTCCTCATCGTGCTGCAACCTTGCCATCTCACATTCCGGATTTAATTACCAAGGGTGGATATACGTGGACGCTGGTTAATGCTGGTATAAGCGGTGTTAGGTTCTTGGATGCACTGCAGTGGTGTTGTGTAGTGAACCGTCGACCGACGGCTATAGTTGGCCCTAAGGTTTCCATAATGGTGCTCGATTTTCTATGTACCAACGGTGTGGCATGGTGGAGCTACGACAGTGGTGGCTACAAGGTGGAAGTGGCAAGGAGCACTAGGGCTTCTTCTCGGTGGATGAGACTGCTTCCTTTGTGCATGGGCTTGGGTTTGCCTTTACAAGTGGGTGTGAGTTTAGGTGGTGCAATCTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.47

Weight (kDa)

5.52

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 175
AccI GTMKAC 1 cut(s) 382
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 1 cut(s) 333
AclWI GGATC 2 cut(s) 224, 237
AfaI GTAC 2 cut(s) 180, 439
AfiI CCNNNNNNNGG 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 192
AjnI CCWGG 3 cut(s) 36, 168, 225
AleI CACNNNNGTG 1 cut(s) 358
AluBI AGCT 4 cut(s) 23, 158, 163, 462
AluI AGCT 4 cut(s) 23, 158, 163, 462
Alw21I GWGCWC 2 cut(s) 426, 503
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 2 cut(s) 224, 237
AlwNI CAGNNNCTG 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 2 cut(s) 40, 400
ApeKI GCWGC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 178
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 4 cut(s) 34, 40, 166, 401
AsuHPI GGTGA 3 cut(s) 28, 77, 188
AvaII GGWCC 2 cut(s) 34, 166
AxyI CCTNAGG 1 cut(s) 405
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 426, 503
BbvI GCAGC 1 cut(s) 241
BccI CCATC 3 cut(s) 56, 212, 274
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 3 cut(s) 38, 170, 227
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 2 cut(s) 356, 393
BfoI RGCGCY 1 cut(s) 89
BisI GCNGC 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 3 cut(s) 38, 170, 227
Bme18I GGWCC 2 cut(s) 34, 166
BmeRI GACNNNNNGTC 1 cut(s) 192
BmgT120I GGNCC 4 cut(s) 34, 40, 166, 401
BmiI GGNNCC 3 cut(s) 180, 224, 231
BmrFI CCNGG 3 cut(s) 38, 170, 227
BmsI GCATC 2 cut(s) 63, 340
Bpu1102I GCTNAGC 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 37, 291
BsaWI WCCGGW 2 cut(s) 198, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 182
Bse21I CCTNAGG 1 cut(s) 405
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 3 cut(s) 38, 170, 227
BseDI CCNNGG 2 cut(s) 37, 291
BseGI GGATG 4 cut(s) 67, 78, 355, 528
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 138, 150
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 42, 402
BshNI GGYRCC 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 386
BsiHKAI GWGCWC 2 cut(s) 426, 503
BsiSI CCGG 2 cut(s) 199, 278
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 520
BsnI GGCC 2 cut(s) 42, 402
Bsp1286I GDGCHC 2 cut(s) 426, 503
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 229
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 1 cut(s) 333
BspANI GGCC 2 cut(s) 42, 402
BspCNI CTCAG 2 cut(s) 139, 151
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 180, 224, 231
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 2 cut(s) 224, 237
BspT107I GGYRCC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 37, 291
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 38, 170, 227
Bst4CI ACNGT 3 cut(s) 380, 446, 470
Bst6I CTCTTC 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 147, 159, 405
BstF5I GGATG 4 cut(s) 67, 78, 355, 528
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 1 cut(s) 229
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 3 cut(s) 38, 170, 227
BstSCI CCNGG 3 cut(s) 36, 168, 225
BstSFI CTRYAG 2 cut(s) 356, 393
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 229
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 405
BsuRI GGCC 2 cut(s) 42, 402
BtsCI GGATG 4 cut(s) 67, 78, 355, 528
BtsI GCAGTG 2 cut(s) 353, 365
BtsIMutI CAGTG 4 cut(s) 189, 353, 365, 475
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 4 cut(s) 34, 40, 166, 401
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 179, 438
CviAII CATG 2 cut(s) 453, 544
CviQI GTAC 2 cut(s) 179, 438
DdeI CTNAG 3 cut(s) 147, 159, 405
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DriI GACNNNNNGTC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 246
Eam1105I GACNNNNNGTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 34, 166
Eco81I CCTNAGG 1 cut(s) 405
EcoRII CCWGG 3 cut(s) 36, 168, 225
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 2 cut(s) 456, 547
FaiI YATR 9 cut(s) 45, 59, 303, 329, 395, 416, 436, 454, 545
FatI CATG 2 cut(s) 452, 543
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 4 cut(s) 74, 85, 362, 535
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 2 cut(s) 42, 402
HapII CCGG 2 cut(s) 199, 278
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 456, 547
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HpaII CCGG 2 cut(s) 199, 278
HphI GGTGA 3 cut(s) 28, 77, 188
Hpy166II GTNNAC 3 cut(s) 309, 376, 383
Hpy188I TCNGA 1 cut(s) 602
Hpy188III TCNNGA 2 cut(s) 32, 278
Hpy8I GTNNAC 3 cut(s) 309, 376, 383
Hpy99I CGWCG 2 cut(s) 384, 391
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 380, 446, 470
HpyCH4IV ACGT 2 cut(s) 205, 305
HpyCH4V TGCA 7 cut(s) 76, 97, 257, 353, 358, 543, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 3 cut(s) 147, 159, 405
HpySE526I ACGT 2 cut(s) 205, 305
Hsp92II CATG 2 cut(s) 456, 547
HspAI GCGC 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 277
KpnI GGTACC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 5 cut(s) 79, 109, 222, 459, 498
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 2 cut(s) 63, 340
MaeI CTAG 1 cut(s) 504
MaeII ACGT 2 cut(s) 205, 305
MaeIII GTNAC 3 cut(s) 16, 184, 194
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 233, 504
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 426, 503
MluCI AATT 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 1 cut(s) 255
MroI TCCGGA 1 cut(s) 277
MseI TTAA 2 cut(s) 284, 318
MslI CAYNNNNRTG 3 cut(s) 48, 358, 419
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 2 cut(s) 199, 278
MspR9I CCNGG 3 cut(s) 38, 170, 227
MvaI CCWGG 3 cut(s) 38, 170, 227
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 456, 547
NlaIV GGNNCC 3 cut(s) 180, 224, 231
NmuCI GTSAC 3 cut(s) 16, 184, 194
OliI CACNNNNGTG 1 cut(s) 358
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 36, 168, 225
PspGI CCWGG 3 cut(s) 36, 168, 225
PspN4I GGNNCC 3 cut(s) 180, 224, 231
PspPI GGNCC 4 cut(s) 34, 40, 166, 401
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 180, 439
RsaNI GTAC 2 cut(s) 179, 438
RseI CAYNNNNRTG 3 cut(s) 48, 358, 419
SalI GTCGAC 1 cut(s) 381
SaqAI TTAA 2 cut(s) 284, 318
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 4 cut(s) 34, 40, 166, 401
ScrFI CCNGG 3 cut(s) 38, 170, 227
SduI GDGCHC 2 cut(s) 426, 503
SfaNI GCATC 2 cut(s) 63, 340
SfcI CTRYAG 2 cut(s) 356, 393
SinI GGWCC 2 cut(s) 34, 166
SmiMI CAYNNNNRTG 3 cut(s) 48, 358, 419
Sse9I AATT 1 cut(s) 285
SsiI CCGC 1 cut(s) 333
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 3 cut(s) 36, 168, 225
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 380, 446, 470
TaiI ACGT 2 cut(s) 208, 308
TaqI TCGA 2 cut(s) 382, 426
TaqII GACCGA 1 cut(s) 400
TasI AATT 1 cut(s) 285
Tru1I TTAA 2 cut(s) 284, 318
Tru9I TTAA 2 cut(s) 284, 318
TscAI CASTG 4 cut(s) 189, 360, 365, 475
TseFI GTSAC 3 cut(s) 16, 184, 194
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 3 cut(s) 16, 184, 194
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 4 cut(s) 189, 360, 365, 475
Van91I CCANNNNNTGG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 34, 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.