Rmu_sc0001791.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001791.1
OG0000336
Physical Location & Seq
Forward (+)
125135 .. 126143
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001791.1_g000023.1.cds

Sequence Viewer

Length: 870 bp
atggcagtgcgcttggctgcatccttgggactggcatctgctcagaagcctgtggatcttcgtccaccaagaggagaagagctgcgtctgtctcagtcgtacttggtcagaaaactcttgacaactatggcttttagtaagcggtcgttcacggtccaaaagcatgaagatcgctttctgttcatgctttctgatccttctgaccggaatcgaatcctcaggaggggaccatggggatttgatcatgctcgtctggtgttgactccatttgacggggtcggcgccataaaggatgttcctctgactactctggcattctggatcaaagttcatggcctccaggtggatttccatactgactggtgccttcgacagatcggaagtgcgttggggaggtttacagtggatgaaagcattgatgtagatctagacttcttctttgagaatctatatggccgcagcaaggattgtgggttgttgacacatgtagggcttccttgttttgggccaccgttgtcggaatttttccagggtgcgatgacgccagcgaggcttaacttggagcgagttctgaatagggtggctgaaacacccatggctgggaagagtttggtctttggtacgcaggagggtggaagtggcttagggggattacaacttctcttgcccgtcacgaaacccaagcctcgcagagaaatccatatccgaactttgcatgttgagattgcacagaccgatgaacaaaccccaacacggggtctgactgggaatttagatggaagtctgccagggcacttgactttggtggatcatgttagtactagtgatggagcaagccatgcaaatagggagattgtggcagcaccgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

289

Amino Acids

31.88

Weight (kDa)

8.48

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 281, 363
AciI CCGC 2 cut(s) 142, 457
AclWI GGATC 4 cut(s) 63, 188, 329, 816
AcoI YGGCCR 1 cut(s) 454
AcsI RAATTY 2 cut(s) 521, 769
AcyI GRCGYC 2 cut(s) 282, 542
AfaI GTAC 3 cut(s) 101, 622, 820
AflIII ACRYGT 1 cut(s) 484
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 3 cut(s) 339, 528, 787
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 4 cut(s) 63, 188, 329, 816
AoxI GGCC 3 cut(s) 334, 454, 506
ApeKI GCWGC 4 cut(s) 17, 82, 459, 860
ApoI RAATTY 2 cut(s) 521, 769
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 2 cut(s) 12, 284
AspS9I GGNCC 3 cut(s) 154, 227, 506
AvaII GGWCC 2 cut(s) 154, 227
AxyI CCTNAGG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 795
BanI GGYRCC 2 cut(s) 281, 363
BbvI GCAGC 3 cut(s) 4, 69, 471
BccI CCATC 2 cut(s) 770, 821
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 3 cut(s) 341, 530, 789
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 96
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 2 cut(s) 428, 822
BfoI RGCGCY 1 cut(s) 285
BglI GCCNNNNNGGC 1 cut(s) 550
BglII AGATCT 1 cut(s) 424
BisI GCNGC 5 cut(s) 18, 83, 457, 460, 861
BlsI GCNGC 5 cut(s) 19, 84, 458, 461, 862
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 3 cut(s) 341, 530, 789
Bme18I GGWCC 2 cut(s) 154, 227
BmgT120I GGNCC 3 cut(s) 154, 227, 506
BmiI GGNNCC 3 cut(s) 228, 283, 365
BmrFI CCNGG 3 cut(s) 341, 530, 789
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 29, 44
BmuI ACTGGG 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 423
BsaHI GRCGYC 2 cut(s) 282, 542
BsaJI CCNNGG 5 cut(s) 24, 230, 529, 594, 788
BsaWI WCCGGW 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 36, 365, 769
Bse21I CCTNAGG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 3 cut(s) 341, 530, 789
BseDI CCNNGG 5 cut(s) 24, 230, 529, 594, 788
BseGI GGATG 3 cut(s) 20, 298, 412
BseJI GATNNNNATC 1 cut(s) 423
BseMII CTCAG 3 cut(s) 56, 107, 232
BseNI ACTGG 3 cut(s) 36, 365, 769
BseRI GAGGAG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 3 cut(s) 4, 69, 471
BseYI CCCAGC 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 336, 456, 508
BshNI GGYRCC 2 cut(s) 281, 363
BsiEI CGRYCG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 2 cut(s) 42, 240
BsmAI GTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 42, 240
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 3 cut(s) 336, 456, 508
Bsp1286I GDGCHC 1 cut(s) 795
Bsp143I GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
Bsp19I CCATGG 2 cut(s) 230, 594
BspACI CCGC 2 cut(s) 142, 457
BspANI GGCC 3 cut(s) 336, 456, 508
BspCNI CTCAG 3 cut(s) 55, 106, 231
BspLI GGNNCC 3 cut(s) 228, 283, 365
BspPI GGATC 4 cut(s) 63, 188, 329, 816
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 281, 363
BsrI ACTGG 3 cut(s) 36, 365, 769
BssECI CCNNGG 5 cut(s) 24, 230, 529, 594, 788
BssMI GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
BssNI GRCGYC 2 cut(s) 282, 542
BssT1I CCWWGG 3 cut(s) 24, 230, 594
Bst2UI CCWGG 3 cut(s) 341, 530, 789
Bst4CI ACNGT 4 cut(s) 154, 403, 513, 867
Bst6I CTCTTC 2 cut(s) 72, 599
BstACI GRCGYC 2 cut(s) 282, 542
BstAPI GCANNNNNTGC 1 cut(s) 839
BstC8I GCNNGC 2 cut(s) 546, 835
BstDEI CTNAG 4 cut(s) 42, 93, 218, 643
BstDSI CCRYGG 2 cut(s) 230, 594
BstF5I GGATG 3 cut(s) 20, 298, 412
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 2 cut(s) 12, 284
BstKTI GATC 8 cut(s) 58, 172, 196, 244, 324, 378, 427, 811
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 550, 839
BstNI CCWGG 3 cut(s) 341, 530, 789
BstNSI RCATGY 2 cut(s) 488, 719
BstSCI CCNGG 3 cut(s) 339, 528, 787
BstSLI GKGCMC 1 cut(s) 795
BstV1I GCAGC 3 cut(s) 4, 69, 471
BstX2I RGATCY 2 cut(s) 55, 424
BstYI RGATCY 2 cut(s) 55, 424
Bsu36I CCTNAGG 1 cut(s) 218
BsuRI GGCC 3 cut(s) 336, 456, 508
BtgI CCRYGG 2 cut(s) 230, 594
BtgZI GCGATG 1 cut(s) 551
BtsCI GGATG 3 cut(s) 20, 298, 412
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 408
Cac8I GCNNGC 2 cut(s) 546, 835
CfoI GCGC 2 cut(s) 12, 284
Cfr13I GGNCC 3 cut(s) 154, 227, 506
CseI GACGC 2 cut(s) 74, 550
Csp6I GTAC 3 cut(s) 100, 621, 819
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviQI GTAC 3 cut(s) 100, 621, 819
DdeI CTNAG 4 cut(s) 42, 93, 218, 643
DinI GGCGCC 1 cut(s) 283
DpnI GATC 8 cut(s) 57, 171, 195, 243, 323, 377, 426, 810
DpnII GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 72, 599
EarI CTCTTC 2 cut(s) 72, 599
Eco130I CCWWGG 3 cut(s) 24, 230, 594
Eco47I GGWCC 2 cut(s) 154, 227
Eco81I CCTNAGG 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 339, 528, 787
EcoT14I CCWWGG 3 cut(s) 24, 230, 594
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
ErhI CCWWGG 3 cut(s) 24, 230, 594
FaqI GGGAC 2 cut(s) 42, 240
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 5 cut(s) 18, 83, 457, 460, 861
FokI GGATG 3 cut(s) 7, 305, 419
Fsp4HI GCNGC 5 cut(s) 18, 83, 457, 460, 861
FspBI CTAG 2 cut(s) 428, 822
GlaI GCGC 2 cut(s) 11, 283
GluI GCNGC 5 cut(s) 18, 83, 457, 460, 861
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 3 cut(s) 336, 456, 508
HapII CCGG 1 cut(s) 205
HgaI GACGC 2 cut(s) 74, 550
HhaI GCGC 2 cut(s) 12, 284
Hin1I GRCGYC 2 cut(s) 282, 542
Hin6I GCGC 2 cut(s) 10, 282
HinP1I GCGC 2 cut(s) 10, 282
HincII GTYRAC 2 cut(s) 261, 480
HindII GTYRAC 2 cut(s) 261, 480
HinfI GANTC 4 cut(s) 208, 213, 262, 445
HpaII CCGG 1 cut(s) 205
Hpy166II GTNNAC 5 cut(s) 65, 150, 261, 399, 480
Hpy188III TCNNGA 5 cut(s) 118, 220, 319, 428, 673
Hpy8I GTNNAC 5 cut(s) 65, 150, 261, 399, 480
HpyAV CCTTC 2 cut(s) 207, 377
HpyCH4III ACNGT 4 cut(s) 154, 403, 513, 867
HpyCH4V TGCA 4 cut(s) 20, 715, 728, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 839
HpyF3I CTNAG 4 cut(s) 42, 93, 218, 643
Hsp92I GRCGYC 2 cut(s) 282, 542
HspAI GCGC 2 cut(s) 10, 282
KasI GGCGCC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 562, 830
Lsp1109I GCAGC 3 cut(s) 4, 69, 471
LweI GCATC 2 cut(s) 29, 44
MaeI CTAG 2 cut(s) 428, 822
MaeIII GTNAC 1 cut(s) 670
MalI GATC 8 cut(s) 57, 171, 195, 243, 323, 377, 426, 810
MboI GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
MboII GAAGA 5 cut(s) 50, 89, 179, 427, 616
MflI RGATCY 2 cut(s) 55, 424
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 2 cut(s) 521, 769
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 9 cut(s) 65, 216, 227, 309, 347, 387, 543, 622, 696
MseI TTAA 1 cut(s) 555
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 3 cut(s) 341, 530, 789
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 3 cut(s) 341, 530, 789
MwoI GCNNNNNNNGC 2 cut(s) 550, 839
NarI GGCGCC 1 cut(s) 282
NcoI CCATGG 2 cut(s) 230, 594
NdeII GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
NlaIV GGNNCC 3 cut(s) 228, 283, 365
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 2 cut(s) 488, 719
PciI ACATGT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 3 cut(s) 208, 213, 445
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 5 cut(s) 19, 84, 458, 461, 862
PleI GAGTC 1 cut(s) 256
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 339, 528, 787
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 3 cut(s) 339, 528, 787
PspN4I GGNNCC 3 cut(s) 228, 283, 365
PspPI GGNCC 3 cut(s) 154, 227, 506
PsuI RGATCY 2 cut(s) 55, 424
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 3 cut(s) 101, 622, 820
RsaNI GTAC 3 cut(s) 100, 621, 819
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 5 cut(s) 18, 83, 457, 460, 861
Sau3AI GATC 8 cut(s) 55, 169, 193, 241, 321, 375, 424, 808
Sau96I GGNCC 3 cut(s) 154, 227, 506
ScaI AGTACT 1 cut(s) 820
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 3 cut(s) 341, 530, 789
SduI GDGCHC 1 cut(s) 795
SetI ASST 3 cut(s) 84, 345, 398
SfaNI GCATC 2 cut(s) 29, 44
SfoI GGCGCC 1 cut(s) 283
SinI GGWCC 2 cut(s) 154, 227
SpeI ACTAGT 1 cut(s) 821
Sse9I AATT 2 cut(s) 521, 769
SsiI CCGC 2 cut(s) 142, 457
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 2 cut(s) 428, 822
StyD4I CCNGG 3 cut(s) 339, 528, 787
StyI CCWWGG 3 cut(s) 24, 230, 594
TaaI ACNGT 4 cut(s) 154, 403, 513, 867
TaqI TCGA 2 cut(s) 211, 370
TaqII GACCGA 1 cut(s) 749
TasI AATT 2 cut(s) 521, 769
TatI WGTACW 1 cut(s) 818
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 3 cut(s) 208, 213, 445
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 2 cut(s) 12, 408
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 4 cut(s) 17, 82, 459, 860
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 5 cut(s) 172, 180, 320, 423, 753
TspRI CASTG 2 cut(s) 12, 408
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 154, 227
XapI RAATTY 2 cut(s) 521, 769
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 2 cut(s) 488, 719
XspI CTAG 2 cut(s) 428, 822
ZrmI AGTACT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.