Rorug02G0320900

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
39283177 .. 39286257
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0320900.1

Sequence Viewer

Length: 885 bp
ATGAATTTGCAGAACTTTTTTGGTGGATTCCATGGAGGAGCTATAGCTTCTCTTGCTGAGGTTGTGTTGGTAGCTACTGCAAGAACAGTTGTGGTTGAGGATAAGGAGCTTTTTCTAGGGGAACTAAGCATCTCTTACCTCTCTTCTGCTCCAAAGAATCTATCTGTCAAGGTGACACGGAATAATCTTTTCTGCCTATCAGTTCTCTTGGGAATTGTTTACTTCAAGGGATTGAAATGGGACTTCTCATCAGAGCTGGTCATAGCTACCTCATGGGAGATGCAAGAGTTCAAGAAGGGTGACATGAAAACTGTATGCGTTACTTTACTTCTTTTTGCCATAATACTGTTCAAAGTTGGAGGCCGCTCTCTGCAACACAGCTCATCTAATTTAGTTTCAGATGGCAATGATAATATTGAAGCAGTCACCCAAACTTCTCTTCTTGTTTTTGGAGGAATAGATTCTTCAGAGGACTACAGTCTACTCTATGGCTTGTTTCCATGTTCTTATACCATTTTGGGGAAACTCTTCTTGATTGTGGGATATGTTCTTCTGTATATAATTGGAGAATATTATGTCGTTGCTGGAGGTGAGCTGATTTTTGAGGTTAATGGCTCTGTAGGAGCCAATTTGTTTCACTTCCTCAGTGCCATTCCAGATGCCATTATACTTCTAGGTTCTGGTGTGAGTACAGAAATTTGGACTACTTATGCTGCAAGGATTATGGTCATATCTATCATCCCAGTTGTTGTTTCTCAAATACCTCAAGTTCTCCACTTAAGTTCAGGTGGCCAAGGCCTTGCAATTTTAATTGCTCTCATTGTCTCCGTGATACTTACTATAGCTTATATCTTCTATGAGGTAACTGATTCATTAATCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

31.79

Weight (kDa)

4.85

Isoelectric Point (pI)

24.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 366
AccI GTMKAC 1 cut(s) 481
AciI CCGC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 2 cut(s) 4, 696
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 691
AfiI CCNNNNNNNGG 1 cut(s) 519
AflII CTTAAG 1 cut(s) 778
AgsI TTSAA 5 cut(s) 226, 235, 292, 352, 419
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 9 cut(s) 41, 47, 74, 109, 256, 266, 381, 595, 845
AluI AGCT 9 cut(s) 41, 47, 74, 109, 256, 266, 381, 595, 845
Alw26I GTCTC 1 cut(s) 829
AoxI GGCC 3 cut(s) 361, 790, 796
ApeKI GCWGC 1 cut(s) 713
ApoI RAATTY 2 cut(s) 4, 696
AseI ATTAAT 1 cut(s) 875
Asp700I GAANNNNTTC 2 cut(s) 460, 527
AsuHPI GGTGA 4 cut(s) 184, 311, 418, 602
BalI TGGCCA 1 cut(s) 792
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 700
BccI CCATC 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 829
BfaI CTAG 2 cut(s) 116, 674
BfmI CTRYAG 4 cut(s) 42, 475, 618, 840
BfrI CTTAAG 1 cut(s) 778
BisI GCNGC 2 cut(s) 364, 714
BlsI GCNGC 2 cut(s) 365, 715
BmiI GGNNCC 1 cut(s) 625
BmrI ACTGGG 1 cut(s) 737
BmsI GCATC 3 cut(s) 138, 270, 649
BmuI ACTGGG 1 cut(s) 737
BoxI GACNNNNGTC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 750
BsaJI CCNNGG 2 cut(s) 31, 793
Bsc4I CCNNNNNNNGG 1 cut(s) 519
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 31, 793
BseGI GGATG 1 cut(s) 738
BseLI CCNNNNNNNGG 1 cut(s) 519
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 2 cut(s) 48, 658
BseNI ACTGG 1 cut(s) 743
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 700
BshFI GGCC 3 cut(s) 363, 792, 798
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 829
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 363, 792, 798
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 1 cut(s) 364
BspANI GGCC 3 cut(s) 363, 792, 798
BspCNI CTCAG 2 cut(s) 49, 657
BspLI GGNNCC 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 31, 793
BssT1I CCWWGG 2 cut(s) 31, 793
Bst4CI ACNGT 4 cut(s) 88, 313, 348, 479
Bst6I CTCTTC 3 cut(s) 148, 444, 533
BstAFI CTTAAG 1 cut(s) 778
BstDEI CTNAG 3 cut(s) 57, 125, 644
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 738
BstMAI GTCTC 1 cut(s) 829
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstPAI GACNNNNGTC 1 cut(s) 477
BstSFI CTRYAG 4 cut(s) 42, 475, 618, 840
BstV1I GCAGC 1 cut(s) 700
BsuRI GGCC 3 cut(s) 363, 792, 798
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 738
BtsIMutI CAGTG 1 cut(s) 652
Csp6I GTAC 1 cut(s) 690
CviAII CATG 4 cut(s) 32, 273, 304, 501
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 3 cut(s) 57, 125, 644
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 3 cut(s) 148, 444, 533
EarI CTCTTC 3 cut(s) 148, 444, 533
Eco130I CCWWGG 2 cut(s) 31, 793
Eco147I AGGCCT 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 31, 793
ErhI CCWWGG 2 cut(s) 31, 793
FaeI CATG 4 cut(s) 35, 276, 307, 504
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 31, 272, 303, 500
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 364, 714
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 2 cut(s) 364, 714
FspBI CTAG 2 cut(s) 116, 674
GluI GCNGC 2 cut(s) 364, 714
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 3 cut(s) 363, 792, 798
Hin1II CATG 4 cut(s) 35, 276, 307, 504
HinfI GANTC 4 cut(s) 27, 157, 461, 869
HphI GGTGA 4 cut(s) 184, 311, 418, 602
Hpy166II GTNNAC 2 cut(s) 220, 482
Hpy188I TCNGA 3 cut(s) 253, 400, 469
Hpy188III TCNNGA 3 cut(s) 292, 532, 656
Hpy8I GTNNAC 2 cut(s) 220, 482
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 4 cut(s) 88, 313, 348, 479
HpyCH4V TGCA 6 cut(s) 10, 80, 283, 373, 716, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 57, 125, 644
Hsp92II CATG 4 cut(s) 35, 276, 307, 504
LmnI GCTCC 4 cut(s) 38, 106, 154, 623
LpnPI CCDG 6 cut(s) 242, 570, 666, 669, 756, 771
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 3 cut(s) 138, 270, 649
MaeI CTAG 2 cut(s) 116, 674
MaeIII GTNAC 5 cut(s) 172, 299, 319, 424, 862
MbiI CCGCTC 1 cut(s) 366
MboII GAAGA 6 cut(s) 135, 431, 456, 520, 542, 844
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 8 cut(s) 4, 213, 388, 561, 628, 696, 804, 810
MluNI TGGCCA 1 cut(s) 792
MmeI TCCRAC 1 cut(s) 337
Mox20I TGGCCA 1 cut(s) 792
MroXI GAANNNNTTC 2 cut(s) 460, 527
MscI TGGCCA 1 cut(s) 792
MseI TTAA 4 cut(s) 609, 779, 809, 875
Msp20I TGGCCA 1 cut(s) 792
MspCI CTTAAG 1 cut(s) 778
MwoI GCNNNNNNNGC 1 cut(s) 53
NcoI CCATGG 1 cut(s) 31
NlaIII CATG 4 cut(s) 35, 276, 307, 504
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 3 cut(s) 172, 299, 424
PceI AGGCCT 1 cut(s) 798
PdmI GAANNNNTTC 2 cut(s) 460, 527
PfeI GAWTC 4 cut(s) 27, 157, 461, 869
PkrI GCNGC 2 cut(s) 365, 715
PshAI GACNNNNGTC 1 cut(s) 477
PshBI ATTAAT 1 cut(s) 875
PspN4I GGNNCC 1 cut(s) 625
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
SaqAI TTAA 4 cut(s) 609, 779, 809, 875
SatI GCNGC 2 cut(s) 364, 714
SfaNI GCATC 3 cut(s) 138, 270, 649
SfcI CTRYAG 4 cut(s) 42, 475, 618, 840
SmlI CTYRAG 2 cut(s) 765, 778
SmoI CTYRAG 2 cut(s) 765, 778
Sse9I AATT 8 cut(s) 4, 213, 388, 561, 628, 696, 804, 810
SseBI AGGCCT 1 cut(s) 798
SsiI CCGC 1 cut(s) 364
SspI AATATT 2 cut(s) 415, 572
SspMI CTAG 2 cut(s) 116, 674
StuI AGGCCT 1 cut(s) 798
StyI CCWWGG 2 cut(s) 31, 793
TaaI ACNGT 4 cut(s) 88, 313, 348, 479
TasI AATT 8 cut(s) 4, 213, 388, 561, 628, 696, 804, 810
TatI WGTACW 1 cut(s) 689
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 4 cut(s) 27, 157, 461, 869
Tru1I TTAA 4 cut(s) 609, 779, 809, 875
Tru9I TTAA 4 cut(s) 609, 779, 809, 875
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 3 cut(s) 172, 299, 424
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 3 cut(s) 172, 299, 424
TspDTI ATGAA 3 cut(s) 17, 320, 861
TspGWI ACGGA 2 cut(s) 193, 817
TspRI CASTG 1 cut(s) 652
Vha464I CTTAAG 1 cut(s) 778
VspI ATTAAT 1 cut(s) 875
XapI RAATTY 2 cut(s) 4, 696
XmiI GTMKAC 1 cut(s) 481
XmnI GAANNNNTTC 2 cut(s) 460, 527
XspI CTAG 2 cut(s) 116, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.