Rorug03G0198300

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000336
Physical Location & Seq
Forward (+)
17425654 .. 17428474
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0198300.1

Sequence Viewer

Length: 1443 bp
ATGGAGCGAAAGCAGAAGTCATTGGCAACTTCGAGTTCTCGAGCTCCAGGAGCTTGTGCTGACAGTGTTTTTAGATTCTTTAGTCTTCCAGAGGAAGTGTCCCATCACATTCTCTCCTTCCTTCCTGTGAAAGACCTCATTCGCTATGGCGGACTGTCCAAGAAATGCAAAGATTTGCAACTGTCGACTCCGTCATTGAACTTTGAGGGGTTTTTGCACCTGTCTAATAATAGGCATTTCAGGTTGTTGAGTTGCTTGGATAGGTTTTTGGTTCTTCGTGGGGATAATAAGATACGACGCTTCCGTGTTGATTGGAATCTTGCTGTAGGGAAAACTGCGAGCTTGTATAATGAGCTTTACCGAGTGATCACGTGGGTGCATGTTGCAGTCAAGTGTAATGTTGAAGAGCTTGATCTCAAGTTGGCAATTCCCGATGCAACGATGTTCGAGCTGCCTCTTTGCATCTTTGATTGTGGATCCTTGAGGTCTCTATTAGTGGAGTGCGATAAAGTTCTAGCAACGCCTTCCGTTGCGTGTTCTACTAATCTTCAATACATAAAGTTGAGAAAGGTTAAAATCGATGAGGGGTTTTGCAAATGGATCTCGTTTTCTTGCAAGTGCATCAAGGAATTACATTTCGAAGAGGTTGAAGTGGAAAATATTACCATTGAAAGCTTGTCTCTGGAGTCATTTAGTTTTGTGTGTCCCTCTTACTGTGACCTGCGTCAACTTCAAATCTCTGGGGAGAAACTTGAAGAGATAGTTATAGAGTGGAGATGTGATTTACCTAGCAGCACATCCTTTAGTGTTTCAGCTCCAAACCTTACATCTTTCAAATGGACTGGGAATTTGTTGAATCACCAGAGTCTAGGGAATTTAGTGTGTTTGGAAAAAGCAGAGATTTTTCTGAGTCCTCCAGCAGATGACTACAACTTTGACAACACATTTGAGGTTCTCCACAGCATATGCAAGGTTAAAGTTCTTGTTCTAAGCGAAGAGACTGCTAAGGCTCTATTTAGGGAAGGTCACATTCCTGCACAGTTCAATGATATTTCTTACTTGGGTATGGATATTAAGAGCTGGGATGATGATGTAGTTCCAGCAATGGTCTCTCTTATGAAAGGAATGCCGAATTTGAATACTTTGAACTTGAAGTCTAACCATTCCGTAAACATCCCAAAGCCTGAGGAATGCCGATTTGATAGGACGTACTGGAAATCCCAAAACTTGTCTTTGATTTTGGAGCTGAAGGAGGTAATAATAGAGCTTTCCGTTGGGAACATTGAATTGGAGTTAGCAAGGTATATCCTTGAGGATGCTAAGAACTTGCAGAAAATGGTGATAATTTATTCACCACAGCAATCAAATCTTATCAGGGGACTAAAGGAGAGCAAGATGAATTCCACCGCTATCATTGTCTTTCAGGAAAAACAAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

480

Amino Acids

54.76

Weight (kDa)

6.4

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 59 7.5e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
AccI GTMKAC 1 cut(s) 185
AciI CCGC 2 cut(s) 150, 1407
AclWI GGATC 3 cut(s) 471, 484, 608
AcsI RAATTY 4 cut(s) 847, 874, 1132, 1399
AcuI CTGAAG 1 cut(s) 1268
AcvI CACGTG 1 cut(s) 372
AfaI GTAC 1 cut(s) 1211
AjnI CCWGG 1 cut(s) 46
AjuI GAANNNNNNNTTGG 2 cut(s) 1271, 1303
AleI CACNNNNGTG 1 cut(s) 374
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 4 cut(s) 492, 684, 992, 1114
AlwI GGATC 3 cut(s) 471, 484, 608
Ama87I CYCGRG 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 451, 792
ApoI RAATTY 4 cut(s) 847, 874, 1132, 1399
ArsI GACNNNNNNTTYG 6 cut(s) 832, 864, 917, 929, 949, 961
AsuHPI GGTGA 3 cut(s) 851, 1344, 1351
AsuII TTCGAA 1 cut(s) 639
AvaI CYCGRG 1 cut(s) 39
AxyI CCTNAGG 1 cut(s) 1185
BamHI GGATCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 46
BbrPI CACGTG 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 438, 804
BccI CCATC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 4 cut(s) 492, 684, 992, 1114
BfaI CTAG 3 cut(s) 515, 789, 869
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 729
BisI GCNGC 2 cut(s) 452, 793
BlsI GCNGC 2 cut(s) 453, 794
Bme1390I CCNGG 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 4 cut(s) 424, 471, 630, 1306
BmuI ACTGGG 1 cut(s) 852
BoxI GACNNNNGTC 1 cut(s) 723
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 3 cut(s) 30, 704, 900
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu14I TTCGAA 1 cut(s) 639
BpuEI CTTGAG 3 cut(s) 401, 502, 1331
Bsa29I ATCGAT 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 315
BsaI GGTCTC 2 cut(s) 492, 1114
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse1I ACTGG 2 cut(s) 847, 1217
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 1 cut(s) 1110
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 579
BseGI GGATG 4 cut(s) 797, 1090, 1173, 1321
BseJI GATNNNNATC 1 cut(s) 315
BseMI GCAATG 1 cut(s) 1110
BseMII CTCAG 2 cut(s) 899, 1176
BseNI ACTGG 2 cut(s) 847, 1217
BseXI GCAGC 2 cut(s) 438, 804
BseYI CCCAGC 1 cut(s) 1080
BsgI GTGCAG 1 cut(s) 1020
BshVI ATCGAT 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 39
BslFI GGGAC 3 cut(s) 85, 690, 1392
BsmAI GTCTC 4 cut(s) 492, 684, 992, 1114
BsmFI GGGAC 3 cut(s) 85, 690, 1392
BsmI GAATGC 2 cut(s) 1131, 1196
Bso31I GGTCTC 2 cut(s) 492, 1114
BsoBI CYCGRG 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 4 cut(s) 366, 412, 476, 600
BspACI CCGC 2 cut(s) 150, 1407
BspCNI CTCAG 2 cut(s) 900, 1177
BspDI ATCGAT 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 3 cut(s) 471, 484, 608
BspQI GCTCTTC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 639
BspTNI GGTCTC 2 cut(s) 492, 1114
BsrDI GCAATG 1 cut(s) 1110
BsrI ACTGG 2 cut(s) 847, 1217
BssMI GATC 4 cut(s) 366, 412, 476, 600
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 5 cut(s) 65, 156, 183, 716, 1041
Bst6I CTCTTC 4 cut(s) 399, 636, 750, 990
BstBAI YACGTR 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 5 cut(s) 908, 989, 1005, 1185, 1320
BstF5I GGATG 4 cut(s) 797, 1090, 1173, 1321
BstKTI GATC 4 cut(s) 369, 415, 479, 603
BstMAI GTCTC 4 cut(s) 492, 684, 992, 1114
BstMBI GATC 4 cut(s) 366, 412, 476, 600
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 383
BstPAI GACNNNNGTC 1 cut(s) 723
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 438, 804
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 476, 600
BstYI RGATCY 2 cut(s) 476, 600
Bsu15I ATCGAT 1 cut(s) 579
Bsu36I CCTNAGG 1 cut(s) 1185
BsuTUI ATCGAT 1 cut(s) 579
BtsCI GGATG 4 cut(s) 797, 1090, 1173, 1321
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 579
CseI GACGC 2 cut(s) 306, 713
Csp6I GTAC 1 cut(s) 1210
CviAII CATG 1 cut(s) 380
CviQI GTAC 1 cut(s) 1210
DdeI CTNAG 5 cut(s) 908, 989, 1005, 1185, 1320
DpnI GATC 4 cut(s) 368, 414, 478, 602
DpnII GATC 4 cut(s) 366, 412, 476, 600
Eam1104I CTCTTC 4 cut(s) 399, 636, 750, 990
EarI CTCTTC 4 cut(s) 399, 636, 750, 990
EciI GGCGGA 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 2 cut(s) 492, 1114
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 1268
Eco72I CACGTG 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 1185
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 1399
EcoRII CCWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 1 cut(s) 383
FaqI GGGAC 3 cut(s) 85, 690, 1392
FatI CATG 1 cut(s) 379
FauNDI CATATG 1 cut(s) 965
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 452, 793
FokI GGATG 4 cut(s) 784, 1097, 1160, 1328
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 452, 793
FspBI CTAG 3 cut(s) 515, 789, 869
GluI GCNGC 2 cut(s) 452, 793
GsaI CCCAGC 1 cut(s) 1084
GsuI CTGGAG 3 cut(s) 30, 704, 900
HgaI GACGC 2 cut(s) 306, 713
Hin1II CATG 1 cut(s) 383
HincII GTYRAC 2 cut(s) 186, 728
HindII GTYRAC 2 cut(s) 186, 728
HindIII AAGCTT 1 cut(s) 673
HinfI GANTC 7 cut(s) 75, 187, 316, 686, 856, 865, 910
HphI GGTGA 3 cut(s) 851, 1344, 1351
Hpy166II GTNNAC 3 cut(s) 186, 728, 1171
Hpy188I TCNGA 1 cut(s) 909
Hpy188III TCNNGA 5 cut(s) 39, 89, 431, 683, 1424
Hpy8I GTNNAC 3 cut(s) 186, 728, 1171
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 5 cut(s) 127, 131, 534, 1016, 1243
HpyCH4III ACNGT 5 cut(s) 65, 156, 183, 716, 1041
HpyCH4IV ACGT 2 cut(s) 371, 1208
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 5 cut(s) 908, 989, 1005, 1185, 1320
HpySE526I ACGT 2 cut(s) 371, 1208
Hsp92II CATG 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 4 cut(s) 366, 412, 476, 600
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 5 cut(s) 4, 49, 50, 820, 1243
Lsp1109I GCAGC 2 cut(s) 438, 804
LweI GCATC 4 cut(s) 424, 471, 630, 1306
MaeI CTAG 3 cut(s) 515, 789, 869
MaeII ACGT 2 cut(s) 371, 1208
MaeIII GTNAC 2 cut(s) 716, 1025
MalI GATC 4 cut(s) 368, 414, 478, 602
MboI GATC 4 cut(s) 366, 412, 476, 600
MboII GAAGA 7 cut(s) 77, 266, 416, 539, 653, 767, 1007
MflI RGATCY 2 cut(s) 476, 600
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 8 cut(s) 426, 629, 847, 874, 1132, 1286, 1344, 1399
MlyI GAGTC 4 cut(s) 181, 695, 874, 919
MseI TTAA 3 cut(s) 573, 975, 1074
MslI CAYNNNNRTG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 2 cut(s) 1131, 1196
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeI CATATG 1 cut(s) 965
NdeII GATC 4 cut(s) 366, 412, 476, 600
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 716, 1025
NspI RCATGY 1 cut(s) 383
NspV TTCGAA 1 cut(s) 639
OliI CACNNNNGTG 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PctI GAATGC 2 cut(s) 1131, 1196
PfeI GAWTC 3 cut(s) 75, 316, 856
PflFI GACNNNGTC 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 2 cut(s) 453, 794
PleI GAGTC 4 cut(s) 181, 694, 873, 918
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 4 cut(s) 181, 694, 873, 918
Ppu21I YACGTR 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 46
PspCI CACGTG 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 1080
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 478
PsuI RGATCY 2 cut(s) 476, 600
PsyI GACNNNGTC 1 cut(s) 190
RsaI GTAC 1 cut(s) 1211
RsaNI GTAC 1 cut(s) 1210
RseI CAYNNNNRTG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 573, 975, 1074
SatI GCNGC 2 cut(s) 452, 793
Sau3AI GATC 4 cut(s) 366, 412, 476, 600
SchI GAGTC 4 cut(s) 181, 695, 874, 919
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 4 cut(s) 424, 471, 630, 1306
SfcI CTRYAG 1 cut(s) 324
Sfr274I CTCGAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 639
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 4 cut(s) 39, 416, 481, 1310
SmoI CTYRAG 4 cut(s) 39, 416, 481, 1310
Sse9I AATT 8 cut(s) 426, 629, 847, 874, 1132, 1286, 1344, 1399
SsiI CCGC 2 cut(s) 150, 1407
SspI AATATT 1 cut(s) 661
SspMI CTAG 3 cut(s) 515, 789, 869
SstI GAGCTC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 5 cut(s) 65, 156, 183, 716, 1041
TaiI ACGT 2 cut(s) 374, 1211
TaqI TCGA 6 cut(s) 32, 40, 185, 447, 579, 639
TasI AATT 8 cut(s) 426, 629, 847, 874, 1132, 1286, 1344, 1399
TfiI GAWTC 3 cut(s) 75, 316, 856
Tru1I TTAA 3 cut(s) 573, 975, 1074
Tru9I TTAA 3 cut(s) 573, 975, 1074
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 716, 1025
TseI GCWGC 2 cut(s) 451, 792
Tsp45I GTSAC 2 cut(s) 716, 1025
TspDTI ATGAA 2 cut(s) 1133, 1412
TspGWI ACGGA 5 cut(s) 180, 293, 517, 1156, 1261
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 1 cut(s) 190
XapI RAATTY 4 cut(s) 847, 874, 1132, 1399
XceI RCATGY 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 3 cut(s) 515, 789, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.