Rorug05G0231600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000336
Physical Location & Seq
Forward (+)
24139991 .. 24142135
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0231600.1

Sequence Viewer

Length: 1098 bp
ATGACCATGGAAGCTTGCAGTGTTTCTCCTACGATTTTCTTCACCATCTTCTCCATTATCGTTTCTGTGTTCATCGCTTTCTCAAATGCCCAGACGGTTCCGGCTATTTACATATTTGGAGACTCCCTATTGGATGTTGGTAACAACAATTACCTTACCATCTCTGTGGCCAAGGCAAATTTTCCTCACAACGGTATCGATTTTCCGACCAAGAAAGCAACCGGGAGGTTTTGCAATGGCAAGAATGCTGCAGATTTTCTGGCTGAGAAAGTAGGATTGCCAACTTCCCCACCATATCTGTCGCTTGTATCAAAATCTAATAAGCAAAAGGGGTCCTTCGAAGCTGGAGTAAGCTTCGCCTCTGGAGGGGCTGGAATCTTCAACGGCACCGATGATGAATATCGTCAGTCACTACCTTTGACAAAACAAATAGGCTACTATTCACAAGTGTGTGAAGAACTTCGGCAACAATTAGGAGCTCAAGCTGCCCAAGACCATCTATCGAAATCTCTACATGTCGTTCTTATTGGAAGCAATGACGTTTTCGGCTACTTAGATTCATCCAGCACCCAAAAGCAATACACACCGGACCAGTATGTGGATTTGATGCTGTCTACTCTTAAACAACACTTACAGAGAATACACAGTCTTGGTGCACGCAAATTTGTAATTCTCGGGACTGGACCCGTTGGATGTTGTCCAGCACGAAGGGATGATAAAACAGGAGAGTGCAATGAAGTAGGAAACTCCATCTCTGCAAAGTATAGTGATGGCCTCAAGTCAATGATGCAGCAATTGAAACCGGCACTGGGCATAAACTACTCCTTCTTCGAGACTTATGGCATCTTCCGTAACATCGACCAGAATCCATCAACTTACGGATTTAATGAGACTAAAGCTGCATGCTGTGGCCTCGGGTATCTTAACGCAGAGGCTCCATGTATACCAGTTTCATCCTACTGCTCCAATAGAAGGGACCATATGTTCTGGGATTTTTACCATCCTACAGAGGCAACTCACAAAATCTTGGTGGAACATCTTTTTGAGGGTTCCACATACACAGTCCCAATGAATGTGAAGAATTTAGTTTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

40.06

Weight (kDa)

6.74

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 36 - 347 1.7e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 598
AccI GTMKAC 2 cut(s) 614, 943
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 3 cut(s) 178, 662, 1081
AfiI CCNNNNNNNGG 5 cut(s) 191, 366, 598, 809, 972
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 2 cut(s) 382, 799
AleI CACNNNNGTG 1 cut(s) 448
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
AluBI AGCT 6 cut(s) 14, 344, 354, 479, 485, 899
AluI AGCT 6 cut(s) 14, 344, 354, 479, 485, 899
Alw21I GWGCWC 2 cut(s) 481, 658
Alw26I GTCTC 3 cut(s) 114, 827, 884
Alw44I GTGCAC 1 cut(s) 654
Ama87I CYCGRG 2 cut(s) 674, 914
AoxI GGCC 3 cut(s) 168, 772, 910
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 4 cut(s) 248, 485, 790, 899
ApoI RAATTY 3 cut(s) 178, 662, 1081
Asp700I GAANNNNTTC 1 cut(s) 459
AspS9I GGNCC 4 cut(s) 333, 589, 683, 976
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 34
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 2 cut(s) 674, 914
AvaII GGWCC 4 cut(s) 333, 589, 683, 976
BaeGI GKGCMC 1 cut(s) 658
BaeI ACNNNNGTAYC 2 cut(s) 178, 211
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 2 cut(s) 481, 658
BbvI GCAGC 4 cut(s) 235, 472, 802, 886
BccI CCATC 7 cut(s) 53, 167, 504, 758, 764, 877, 1008
BceAI ACGGC 1 cut(s) 400
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 114, 827, 884
BfmI CTRYAG 2 cut(s) 249, 1005
BisI GCNGC 4 cut(s) 249, 486, 791, 900
BlsI GCNGC 4 cut(s) 250, 487, 792, 901
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 4 cut(s) 333, 589, 683, 976
BmeT110I CYCGRG 2 cut(s) 674, 914
BmgT120I GGNCC 4 cut(s) 333, 589, 683, 976
BmiI GGNNCC 7 cut(s) 99, 334, 388, 685, 936, 977, 1051
BmrFI CCNGG 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 818
BmsI GCATC 3 cut(s) 597, 777, 852
BmuI ACTGGG 1 cut(s) 818
BpmI CTGGAG 2 cut(s) 366, 384
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 465, 761
BpuMI CCSGG 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 3 cut(s) 6, 171, 913
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 366, 598, 809, 972
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 4 cut(s) 592, 685, 813, 947
Bse3DI GCAATG 3 cut(s) 241, 541, 739
Bse8I GATNNNNATC 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 6, 171, 913
BseGI GGATG 6 cut(s) 139, 560, 698, 718, 953, 1000
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 5 cut(s) 191, 366, 598, 809, 972
BseMI GCAATG 3 cut(s) 241, 541, 739
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 4 cut(s) 592, 685, 813, 947
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 4 cut(s) 235, 472, 802, 886
BshFI GGCC 3 cut(s) 170, 774, 912
BshNI GGYRCC 1 cut(s) 386
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 481, 658
BsiHKCI CYCGRG 2 cut(s) 674, 914
BsiSI CCGG 4 cut(s) 101, 222, 587, 803
BslFI GGGAC 3 cut(s) 691, 989, 1049
BslI CCNNNNNNNGG 5 cut(s) 191, 366, 598, 809, 972
BsmAI GTCTC 3 cut(s) 114, 827, 884
BsmFI GGGAC 3 cut(s) 691, 989, 1049
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 3 cut(s) 170, 774, 912
BsoBI CYCGRG 2 cut(s) 674, 914
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 481, 658
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 3 cut(s) 170, 774, 912
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 198
BspLI GGNNCC 7 cut(s) 99, 334, 388, 685, 936, 977, 1051
BspMAI CTGCAG 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 3 cut(s) 241, 541, 739
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 4 cut(s) 592, 685, 813, 947
BssAI RCCGGY 1 cut(s) 802
BssECI CCNNGG 3 cut(s) 6, 171, 913
BssNAI GTATAC 1 cut(s) 944
BssT1I CCWWGG 2 cut(s) 6, 171
Bst1107I GTATAC 1 cut(s) 944
Bst4CI ACNGT 4 cut(s) 97, 194, 647, 1063
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 16, 658, 904
BstDEI CTNAG 2 cut(s) 264, 553
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 6 cut(s) 139, 560, 698, 718, 953, 1000
BstMAI GTCTC 3 cut(s) 114, 827, 884
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNSI RCATGY 2 cut(s) 518, 906
BstSCI CCNGG 1 cut(s) 221
BstSFI CTRYAG 2 cut(s) 249, 1005
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 4 cut(s) 235, 472, 802, 886
BstXI CCANNNNNNTGG 1 cut(s) 166
BstZ17I GTATAC 1 cut(s) 944
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 3 cut(s) 170, 774, 912
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 6 cut(s) 139, 560, 698, 718, 953, 1000
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 806
Cac8I GCNNGC 3 cut(s) 16, 658, 904
Cfr10I RCCGGY 1 cut(s) 802
Cfr13I GGNCC 4 cut(s) 333, 589, 683, 976
ClaI ATCGAT 1 cut(s) 198
CviAII CATG 4 cut(s) 7, 515, 903, 939
DdeI CTNAG 2 cut(s) 264, 553
EaeI YGGCCR 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 2 cut(s) 6, 171
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 4 cut(s) 333, 589, 683, 976
Eco53kI GAGCTC 1 cut(s) 479
Eco88I CYCGRG 2 cut(s) 674, 914
EcoICRI GAGCTC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 6, 171
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 6, 171
FaeI CATG 4 cut(s) 10, 518, 906, 942
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 3 cut(s) 691, 989, 1049
FatI CATG 4 cut(s) 6, 514, 902, 938
FauNDI CATATG 1 cut(s) 981
FblI GTMKAC 2 cut(s) 614, 943
Fnu4HI GCNGC 4 cut(s) 249, 486, 791, 900
FokI GGATG 6 cut(s) 146, 547, 705, 725, 940, 987
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 249, 486, 791, 900
GluI GCNGC 4 cut(s) 249, 486, 791, 900
GsuI CTGGAG 2 cut(s) 366, 384
HaeIII GGCC 3 cut(s) 170, 774, 912
HapII CCGG 4 cut(s) 101, 222, 587, 803
Hin1II CATG 4 cut(s) 10, 518, 906, 942
HindIII AAGCTT 2 cut(s) 12, 352
HinfI GANTC 4 cut(s) 122, 375, 557, 865
HpaII CCGG 4 cut(s) 101, 222, 587, 803
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 615, 656, 944
Hpy188I TCNGA 2 cut(s) 207, 1097
Hpy188III TCNNGA 3 cut(s) 363, 676, 832
Hpy8I GTNNAC 3 cut(s) 615, 656, 944
HpyAV CCTTC 4 cut(s) 346, 702, 835, 966
HpyCH4III ACNGT 4 cut(s) 97, 194, 647, 1063
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 8 cut(s) 18, 234, 251, 656, 732, 758, 790, 902
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 2 cut(s) 264, 553
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 4 cut(s) 10, 518, 906, 942
LmnI GCTCC 3 cut(s) 476, 940, 968
Lsp1109I GCAGC 4 cut(s) 235, 472, 802, 886
LweI GCATC 3 cut(s) 597, 777, 852
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 3 cut(s) 140, 408, 851
MboII GAAGA 7 cut(s) 31, 40, 370, 467, 820, 838, 1090
MfeI CAATTG 1 cut(s) 794
MhlI GDGCHC 2 cut(s) 481, 658
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 7 cut(s) 148, 178, 470, 662, 669, 794, 1081
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 230, 670
MnlI CCTC 9 cut(s) 195, 219, 359, 370, 785, 923, 925, 1003, 1039
Mox20I TGGCCA 1 cut(s) 170
MroXI GAANNNNTTC 1 cut(s) 459
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 621, 885, 924
MslI CAYNNNNRTG 2 cut(s) 164, 448
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 4 cut(s) 101, 222, 587, 803
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 1 cut(s) 794
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 485
NciI CCSGG 1 cut(s) 223
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 981
NlaIII CATG 4 cut(s) 10, 518, 906, 942
NlaIV GGNNCC 7 cut(s) 99, 334, 388, 685, 936, 977, 1051
NmuCI GTSAC 1 cut(s) 408
NspI RCATGY 2 cut(s) 518, 906
NspV TTCGAA 1 cut(s) 339
OliI CACNNNNGTG 1 cut(s) 448
PaeI GCATGC 1 cut(s) 906
PciI ACATGT 1 cut(s) 514
PctI GAATGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 3 cut(s) 375, 557, 865
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 4 cut(s) 250, 487, 792, 901
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 333
PscI ACATGT 1 cut(s) 514
Psp124BI GAGCTC 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 333
PspN4I GGNNCC 7 cut(s) 99, 334, 388, 685, 936, 977, 1051
PspPI GGNCC 4 cut(s) 333, 589, 683, 976
PspPPI RGGWCCY 1 cut(s) 333
PstI CTGCAG 1 cut(s) 253
RseI CAYNNNNRTG 2 cut(s) 164, 448
SacI GAGCTC 1 cut(s) 481
SaqAI TTAA 3 cut(s) 621, 885, 924
SatI GCNGC 4 cut(s) 249, 486, 791, 900
Sau96I GGNCC 4 cut(s) 333, 589, 683, 976
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 2 cut(s) 481, 658
SfaNI GCATC 3 cut(s) 597, 777, 852
SfcI CTRYAG 2 cut(s) 249, 1005
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 4 cut(s) 333, 589, 683, 976
SmiMI CAYNNNNRTG 2 cut(s) 164, 448
SmlI CTYRAG 2 cut(s) 480, 776
SmoI CTYRAG 2 cut(s) 480, 776
SphI GCATGC 1 cut(s) 906
Sse9I AATT 7 cut(s) 148, 178, 470, 662, 669, 794, 1081
SstI GAGCTC 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 6, 171
TaaI ACNGT 4 cut(s) 97, 194, 647, 1063
TaiI ACGT 1 cut(s) 543
TaqI TCGA 5 cut(s) 198, 339, 503, 831, 858
TasI AATT 7 cut(s) 148, 178, 470, 662, 669, 794, 1081
TfiI GAWTC 3 cut(s) 375, 557, 865
Tru1I TTAA 3 cut(s) 621, 885, 924
Tru9I TTAA 3 cut(s) 621, 885, 924
TscAI CASTG 2 cut(s) 25, 813
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 4 cut(s) 248, 485, 790, 899
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 6 cut(s) 61, 411, 549, 750, 942, 1085
TspGWI ACGGA 2 cut(s) 839, 894
TspRI CASTG 2 cut(s) 25, 813
Van91I CCANNNNNTGG 1 cut(s) 598
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 4 cut(s) 333, 589, 683, 976
XapI RAATTY 3 cut(s) 178, 662, 1081
XceI RCATGY 2 cut(s) 518, 906
XmiI GTMKAC 2 cut(s) 614, 943
XmnI GAANNNNTTC 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.