Rmu_sc0000342.1_g000016

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000342.1
OG0000336
Physical Location & Seq
Forward (+)
88297 .. 89426
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000342.1_g000016.1.cds

Sequence Viewer

Length: 708 bp
atggaggaggtggatgagatggctgttcaactggcagcttcacttggcctggcagacgttcgcaggccagtggatcttcgtccggctgaacatggagaccgctttctgtttaccttgacggatccaacagaccgaaaccggatccttcgatgtggtccttggggctttgatagagctccggtcgttctagcaccgtatgatggggtgggggcgataaaggatgttccgctctctactttaaccttctggatcaaggtacgtgacctgccaccagactttcatactgatcgttgcttgagaaggattggtagcgctttggggcggtatgtgcagaaggacacaacagaatttgaagaaggaaggattcagatccgagttgaggttgaccttctgcagcctgtgcttttccgacggagtttcacggggttgacctctatggcagatgttaagagtgtggtggagactggtattgagccatcttcgggtggtttagggcaggagtttcctgggagtggtaattcaagtgaggcattgatggaggcagttcctagttgtggtatgcgtcgaaaacatgtggaggaagatggtatctctccaaagaagctgcgtttgagcttagtagtgggcaggacacatttggattctatgacaatgggattgagttatgtgaaagatgtgaaggaagtttacaagaagaggctgggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

235

Amino Acids

26.13

Weight (kDa)

6.45

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccBSI CCGCTC 1 cut(s) 229
AciI CCGC 3 cut(s) 100, 227, 322
AclWI GGATC 7 cut(s) 81, 116, 129, 136, 149, 257, 364
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 1 cut(s) 258
AfeI AGCGCT 1 cut(s) 313
AfiI CCNNNNNNNGG 5 cut(s) 200, 379, 482, 512, 554
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 3 cut(s) 29, 353, 522
AjnI CCWGG 2 cut(s) 48, 505
AluBI AGCT 4 cut(s) 38, 176, 604, 615
AluI AGCT 4 cut(s) 38, 176, 604, 615
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 90, 455
AlwI GGATC 7 cut(s) 81, 116, 129, 136, 149, 257, 364
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 2 cut(s) 46, 65
ApeKI GCWGC 3 cut(s) 35, 394, 604
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
BamHI GGATCC 2 cut(s) 121, 141
BanII GRGCYC 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 671, 703
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 47, 406, 591
BccI CCATC 5 cut(s) 13, 194, 484, 529, 578
BciT130I CCWGG 2 cut(s) 50, 507
BcoDI GTCTC 2 cut(s) 90, 455
BfaI CTAG 2 cut(s) 188, 549
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 273
BisI GCNGC 3 cut(s) 36, 395, 605
BlsI GCNGC 3 cut(s) 37, 396, 606
Bme1390I CCNGG 2 cut(s) 50, 507
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 123, 143
BmrFI CCNGG 2 cut(s) 50, 507
BpuEI CTTGAG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 158, 506
BsaWI WCCGGW 2 cut(s) 138, 178
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 379, 482, 512, 554
Bse1I ACTGG 3 cut(s) 36, 68, 469
Bse8I GATNNNNATC 1 cut(s) 368
BseBI CCWGG 2 cut(s) 50, 507
BseDI CCNNGG 2 cut(s) 158, 506
BseGI GGATG 2 cut(s) 19, 226
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 5 cut(s) 200, 379, 482, 512, 554
BseNI ACTGG 3 cut(s) 36, 68, 469
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 47, 406, 591
BseYI CCCAGC 1 cut(s) 700
BsgI GTGCAG 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 48, 67
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 3 cut(s) 83, 139, 179
BslI CCNNNNNNNGG 5 cut(s) 200, 379, 482, 512, 554
BsmAI GTCTC 2 cut(s) 90, 455
BsnI GGCC 2 cut(s) 48, 67
Bso31I GGTCTC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 6 cut(s) 73, 121, 141, 249, 286, 369
BspACI CCGC 3 cut(s) 100, 227, 322
BspANI GGCC 2 cut(s) 48, 67
BspLI GGNNCC 2 cut(s) 123, 143
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 7 cut(s) 81, 116, 129, 136, 149, 257, 364
BspTNI GGTCTC 1 cut(s) 90
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 3 cut(s) 36, 68, 469
BssECI CCNNGG 2 cut(s) 158, 506
BssMI GATC 6 cut(s) 73, 121, 141, 249, 286, 369
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 50, 507
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 400
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 616
BstF5I GGATG 2 cut(s) 19, 226
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 6 cut(s) 76, 124, 144, 252, 289, 372
BstMAI GTCTC 2 cut(s) 90, 455
BstMBI GATC 6 cut(s) 73, 121, 141, 249, 286, 369
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 328, 400
BstNI CCWGG 2 cut(s) 50, 507
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 2 cut(s) 48, 505
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 47, 406, 591
BstX2I RGATCY 4 cut(s) 73, 121, 141, 369
BstYI RGATCY 4 cut(s) 73, 121, 141, 369
BsuRI GGCC 2 cut(s) 48, 67
BtsCI GGATG 2 cut(s) 19, 226
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 257
CviAII CATG 2 cut(s) 92, 572
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 616
DpnI GATC 6 cut(s) 75, 123, 143, 251, 288, 371
DpnII GATC 6 cut(s) 73, 121, 141, 249, 286, 369
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 155
Eco47III AGCGCT 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 48, 505
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 95, 575
FaiI YATR 9 cut(s) 93, 198, 282, 327, 437, 560, 573, 647, 666
FatI CATG 2 cut(s) 91, 571
Fnu4HI GCNGC 3 cut(s) 36, 395, 605
FokI GGATG 2 cut(s) 26, 233
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 36, 395, 605
FspBI CTAG 2 cut(s) 188, 549
GlaI GCGC 1 cut(s) 313
GluI GCNGC 3 cut(s) 36, 395, 605
GsaI CCCAGC 1 cut(s) 704
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 2 cut(s) 48, 67
HapII CCGG 3 cut(s) 83, 139, 179
HgaI GACGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 95, 575
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HincII GTYRAC 2 cut(s) 385, 429
HindII GTYRAC 2 cut(s) 385, 429
HinfI GANTC 2 cut(s) 364, 641
HpaII CCGG 3 cut(s) 83, 139, 179
Hpy166II GTNNAC 4 cut(s) 111, 385, 429, 688
Hpy188I TCNGA 3 cut(s) 369, 374, 410
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 4 cut(s) 111, 385, 429, 688
Hpy99I CGWCG 2 cut(s) 414, 567
HpyAV CCTTC 8 cut(s) 155, 253, 294, 328, 350, 354, 398, 673
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 2 cut(s) 57, 259
HpyCH4V TGCA 2 cut(s) 331, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 400
HpyF3I CTNAG 1 cut(s) 616
HpySE526I ACGT 2 cut(s) 57, 259
Hsp92II CATG 2 cut(s) 95, 575
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 6 cut(s) 73, 121, 141, 249, 286, 369
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 3 cut(s) 47, 406, 591
MaeI CTAG 2 cut(s) 188, 549
MaeII ACGT 2 cut(s) 57, 259
MaeIII GTNAC 1 cut(s) 260
MalI GATC 6 cut(s) 75, 123, 143, 251, 288, 371
MbiI CCGCTC 1 cut(s) 229
MboI GATC 6 cut(s) 73, 121, 141, 249, 286, 369
MboII GAAGA 5 cut(s) 68, 365, 471, 593, 706
MflI RGATCY 4 cut(s) 73, 121, 141, 369
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 347, 517
MmeI TCCRAC 2 cut(s) 149, 433
MnlI CCTC 6 cut(s) 373, 442, 520, 532, 571, 690
MseI TTAA 2 cut(s) 239, 447
MspI CCGG 3 cut(s) 83, 139, 179
MspR9I CCNGG 2 cut(s) 50, 507
MvaI CCWGG 2 cut(s) 50, 507
MwoI GCNNNNNNNGC 2 cut(s) 328, 400
NdeII GATC 6 cut(s) 73, 121, 141, 249, 286, 369
NlaIII CATG 2 cut(s) 95, 575
NlaIV GGNNCC 2 cut(s) 123, 143
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 575
PciI ACATGT 1 cut(s) 571
PfeI GAWTC 2 cut(s) 364, 641
PkrI GCNGC 3 cut(s) 37, 396, 606
Ppu21I YACGTR 1 cut(s) 260
PscI ACATGT 1 cut(s) 571
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 48, 505
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 2 cut(s) 48, 505
PspN4I GGNNCC 2 cut(s) 123, 143
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 396
PsuI RGATCY 4 cut(s) 73, 121, 141, 369
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 239, 447
SatI GCNGC 3 cut(s) 36, 395, 605
Sau3AI GATC 6 cut(s) 73, 121, 141, 249, 286, 369
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 50, 507
SduI GDGCHC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 2 cut(s) 347, 517
SsiI CCGC 3 cut(s) 100, 227, 322
SspMI CTAG 2 cut(s) 188, 549
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 48, 505
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 2 cut(s) 60, 262
TaqI TCGA 2 cut(s) 148, 565
TaqII GACCGA 1 cut(s) 147
TasI AATT 2 cut(s) 347, 517
TfiI GAWTC 2 cut(s) 364, 641
Tru1I TTAA 2 cut(s) 239, 447
Tru9I TTAA 2 cut(s) 239, 447
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 35, 394, 604
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 2 cut(s) 134, 427
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 575
XspI CTAG 2 cut(s) 188, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.