ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 566 |
| Acc65I | GGTACC | 1 cut(s) | 323 |
| AccB1I | GGYRCC | 1 cut(s) | 323 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 218, 713 |
| AclWI | GGATC | 3 cut(s) | 86, 403, 827 |
| AcoI | YGGCCR | 2 cut(s) | 460, 784 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AcyI | GRCGYC | 2 cut(s) | 67, 563 |
| AfaI | GTAC | 4 cut(s) | 223, 229, 325, 375 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 139, 167, 218, 333, 526, 681, 713, 782 |
| AflIII | ACRYGT | 1 cut(s) | 523 |
| AgsI | TTSAA | 8 cut(s) | 272, 349, 404, 440, 477, 723, 752, 1122 |
| AjnI | CCWGG | 5 cut(s) | 119, 166, 352, 654, 735 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 122, 154 |
| AluBI | AGCT | 3 cut(s) | 701, 853, 1045 |
| AluI | AGCT | 3 cut(s) | 701, 853, 1045 |
| Alw21I | GWGCWC | 1 cut(s) | 594 |
| AlwI | GGATC | 3 cut(s) | 86, 403, 827 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 133 |
| Ama87I | CYCGRG | 1 cut(s) | 764 |
| AoxI | GGCC | 4 cut(s) | 460, 517, 617, 784 |
| ApeKI | GCWGC | 6 cut(s) | 107, 152, 206, 539, 701, 853 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1094 |
| Asp718I | GGTACC | 1 cut(s) | 323 |
| AspS9I | GGNCC | 4 cut(s) | 617, 768, 824, 1078 |
| AsuHPI | GGTGA | 1 cut(s) | 619 |
| AvaI | CYCGRG | 1 cut(s) | 764 |
| AvaII | GGWCC | 3 cut(s) | 768, 824, 1078 |
| BaeGI | GKGCMC | 2 cut(s) | 120, 900 |
| BalI | TGGCCA | 1 cut(s) | 462 |
| BanI | GGYRCC | 1 cut(s) | 323 |
| BanII | GRGCYC | 1 cut(s) | 963 |
| BbsI | GAAGAC | 1 cut(s) | 337 |
| Bbv12I | GWGCWC | 1 cut(s) | 594 |
| BbvI | GCAGC | 6 cut(s) | 94, 139, 218, 526, 688, 840 |
| BccI | CCATC | 5 cut(s) | 715, 795, 996, 1013, 1097 |
| BceAI | ACGGC | 1 cut(s) | 431 |
| BciT130I | CCWGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| BclI | TGATCA | 1 cut(s) | 1114 |
| BfaI | CTAG | 1 cut(s) | 930 |
| BfmI | CTRYAG | 1 cut(s) | 843 |
| BisI | GCNGC | 6 cut(s) | 108, 153, 207, 540, 702, 854 |
| BlsI | GCNGC | 6 cut(s) | 109, 154, 208, 541, 703, 855 |
| Bme1390I | CCNGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| Bme18I | GGWCC | 3 cut(s) | 768, 824, 1078 |
| BmeT110I | CYCGRG | 1 cut(s) | 764 |
| BmgT120I | GGNCC | 4 cut(s) | 617, 768, 824, 1078 |
| BmiI | GGNNCC | 5 cut(s) | 325, 393, 531, 769, 770 |
| BmrFI | CCNGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| BmrI | ACTGGG | 1 cut(s) | 428 |
| BmsI | GCATC | 8 cut(s) | 19, 274, 284, 472, 570, 749, 793, 1004 |
| BmuI | ACTGGG | 1 cut(s) | 428 |
| BpiI | GAAGAC | 1 cut(s) | 337 |
| BpmI | CTGGAG | 1 cut(s) | 378 |
| BpuEI | CTTGAG | 1 cut(s) | 81 |
| BsaAI | YACGTR | 1 cut(s) | 922 |
| BsaHI | GRCGYC | 2 cut(s) | 67, 563 |
| BsaJI | CCNNGG | 2 cut(s) | 71, 119 |
| BsaWI | WCCGGW | 1 cut(s) | 532 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 139, 167, 218, 333, 526, 681, 713, 782 |
| Bse118I | RCCGGY | 3 cut(s) | 287, 619, 782 |
| Bse1I | ACTGG | 3 cut(s) | 325, 434, 630 |
| Bse3DI | GCAATG | 2 cut(s) | 21, 881 |
| BseBI | CCWGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| BseDI | CCNNGG | 2 cut(s) | 71, 119 |
| BseGI | GGATG | 4 cut(s) | 42, 988, 1024, 1077 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 139, 167, 218, 333, 526, 681, 713, 782 |
| BseMI | GCAATG | 2 cut(s) | 21, 881 |
| BseMII | CTCAG | 5 cut(s) | 313, 879, 903, 915, 1077 |
| BseNI | ACTGG | 3 cut(s) | 325, 434, 630 |
| BseRI | GAGGAG | 2 cut(s) | 153, 863 |
| BseSI | GKGCMC | 2 cut(s) | 120, 900 |
| BseXI | GCAGC | 6 cut(s) | 94, 139, 218, 526, 688, 840 |
| BsgI | GTGCAG | 1 cut(s) | 525 |
| BshFI | GGCC | 4 cut(s) | 462, 519, 619, 786 |
| BshNI | GGYRCC | 1 cut(s) | 323 |
| BsiHKAI | GWGCWC | 1 cut(s) | 594 |
| BsiHKCI | CYCGRG | 1 cut(s) | 764 |
| BsiSI | CCGG | 4 cut(s) | 288, 533, 620, 783 |
| BslFI | GGGAC | 1 cut(s) | 754 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 139, 167, 218, 333, 526, 681, 713, 782 |
| BsmFI | GGGAC | 1 cut(s) | 754 |
| BsmI | GAATGC | 2 cut(s) | 109, 154 |
| BsnI | GGCC | 4 cut(s) | 462, 519, 619, 786 |
| BsoBI | CYCGRG | 1 cut(s) | 764 |
| Bsp1286I | GDGCHC | 4 cut(s) | 120, 594, 900, 963 |
| Bsp143I | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| BspANI | GGCC | 4 cut(s) | 462, 519, 619, 786 |
| BspCNI | CTCAG | 5 cut(s) | 312, 880, 904, 914, 1078 |
| BspLI | GGNNCC | 5 cut(s) | 325, 393, 531, 769, 770 |
| BspPI | GGATC | 3 cut(s) | 86, 403, 827 |
| BspT107I | GGYRCC | 1 cut(s) | 323 |
| BsrDI | GCAATG | 2 cut(s) | 21, 881 |
| BsrFI | RCCGGY | 3 cut(s) | 287, 619, 782 |
| BsrI | ACTGG | 3 cut(s) | 325, 434, 630 |
| BssAI | RCCGGY | 3 cut(s) | 287, 619, 782 |
| BssECI | CCNNGG | 2 cut(s) | 71, 119 |
| BssMI | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| BssNI | GRCGYC | 2 cut(s) | 67, 563 |
| Bst2UI | CCWGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| Bst4CI | ACNGT | 2 cut(s) | 667, 1095 |
| BstACI | GRCGYC | 2 cut(s) | 67, 563 |
| BstBAI | YACGTR | 1 cut(s) | 922 |
| BstC8I | GCNNGC | 3 cut(s) | 289, 621, 969 |
| BstDEI | CTNAG | 6 cut(s) | 299, 888, 901, 912, 952, 1086 |
| BstDSI | CCRYGG | 1 cut(s) | 71 |
| BstF5I | GGATG | 4 cut(s) | 42, 988, 1024, 1077 |
| BstKTI | GATC | 5 cut(s) | 13, 94, 411, 835, 1117 |
| BstMBI | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 203, 536, 589, 668, 1029 |
| BstNI | CCWGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| BstNSI | RCATGY | 1 cut(s) | 527 |
| BstSCI | CCNGG | 5 cut(s) | 119, 166, 352, 654, 735 |
| BstSFI | CTRYAG | 1 cut(s) | 843 |
| BstSLI | GKGCMC | 2 cut(s) | 120, 900 |
| BstV1I | GCAGC | 6 cut(s) | 94, 139, 218, 526, 688, 840 |
| BstV2I | GAAGAC | 1 cut(s) | 337 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1012 |
| BsuRI | GGCC | 4 cut(s) | 462, 519, 619, 786 |
| BtgI | CCRYGG | 1 cut(s) | 71 |
| BtsCI | GGATG | 4 cut(s) | 42, 988, 1024, 1077 |
| BtsIMutI | CAGTG | 1 cut(s) | 637 |
| Cac8I | GCNNGC | 3 cut(s) | 289, 621, 969 |
| CaiI | CAGNNNCTG | 1 cut(s) | 133 |
| Cfr10I | RCCGGY | 3 cut(s) | 287, 619, 782 |
| Cfr13I | GGNCC | 4 cut(s) | 617, 768, 824, 1078 |
| CseI | GACGC | 1 cut(s) | 75 |
| Csp6I | GTAC | 4 cut(s) | 222, 228, 324, 374 |
| CviAII | CATG | 6 cut(s) | 241, 419, 458, 503, 524, 1060 |
| CviQI | GTAC | 4 cut(s) | 222, 228, 324, 374 |
| DdeI | CTNAG | 6 cut(s) | 299, 888, 901, 912, 952, 1086 |
| DpnI | GATC | 5 cut(s) | 12, 93, 410, 834, 1116 |
| DpnII | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| EaeI | YGGCCR | 2 cut(s) | 460, 784 |
| Eco24I | GRGCYC | 1 cut(s) | 963 |
| Eco47I | GGWCC | 3 cut(s) | 768, 824, 1078 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| Eco88I | CYCGRG | 1 cut(s) | 764 |
| EcoO109I | RGGNCCY | 1 cut(s) | 768 |
| EcoRII | CCWGG | 5 cut(s) | 119, 166, 352, 654, 735 |
| EcoT38I | GRGCYC | 1 cut(s) | 963 |
| FaeI | CATG | 6 cut(s) | 244, 422, 461, 506, 527, 1063 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 469, 501, 1114, 1146 |
| FaqI | GGGAC | 1 cut(s) | 754 |
| FatI | CATG | 6 cut(s) | 240, 418, 457, 502, 523, 1059 |
| FbaI | TGATCA | 1 cut(s) | 1114 |
| Fnu4HI | GCNGC | 6 cut(s) | 108, 153, 207, 540, 702, 854 |
| FokI | GGATG | 4 cut(s) | 29, 975, 1031, 1084 |
| FriOI | GRGCYC | 1 cut(s) | 963 |
| Fsp4HI | GCNGC | 6 cut(s) | 108, 153, 207, 540, 702, 854 |
| FspBI | CTAG | 1 cut(s) | 930 |
| GluI | GCNGC | 6 cut(s) | 108, 153, 207, 540, 702, 854 |
| GsuI | CTGGAG | 1 cut(s) | 378 |
| HaeIII | GGCC | 4 cut(s) | 462, 519, 619, 786 |
| HapII | CCGG | 4 cut(s) | 288, 533, 620, 783 |
| HgaI | GACGC | 1 cut(s) | 75 |
| Hin1I | GRCGYC | 2 cut(s) | 67, 563 |
| Hin1II | CATG | 6 cut(s) | 244, 422, 461, 506, 527, 1063 |
| HinfI | GANTC | 3 cut(s) | 635, 640, 916 |
| HpaII | CCGG | 4 cut(s) | 288, 533, 620, 783 |
| HphI | GGTGA | 1 cut(s) | 619 |
| Hpy166II | GTNNAC | 2 cut(s) | 59, 65 |
| Hpy188I | TCNGA | 7 cut(s) | 129, 302, 413, 514, 904, 1042, 1100 |
| Hpy188III | TCNNGA | 6 cut(s) | 14, 98, 395, 477, 567, 1143 |
| Hpy8I | GTNNAC | 2 cut(s) | 59, 65 |
| Hpy99I | CGWCG | 1 cut(s) | 417 |
| HpyAV | CCTTC | 5 cut(s) | 305, 509, 1057, 1069, 1140 |
| HpyCH4III | ACNGT | 2 cut(s) | 667, 1095 |
| HpyCH4IV | ACGT | 3 cut(s) | 61, 563, 921 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 542, 603, 650, 662, 856, 967, 995, 1051 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 203, 536, 589, 668, 1029 |
| HpyF3I | CTNAG | 6 cut(s) | 299, 888, 901, 912, 952, 1086 |
| HpySE526I | ACGT | 3 cut(s) | 61, 563, 921 |
| Hsp92I | GRCGYC | 2 cut(s) | 67, 563 |
| Hsp92II | CATG | 6 cut(s) | 244, 422, 461, 506, 527, 1063 |
| KflI | GGGWCCC | 1 cut(s) | 768 |
| KpnI | GGTACC | 1 cut(s) | 327 |
| KroI | GCCGGC | 2 cut(s) | 287, 619 |
| KroNI | GCCGGC | 2 cut(s) | 289, 621 |
| Ksp22I | TGATCA | 1 cut(s) | 1114 |
| Kzo9I | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| LmnI | GCTCC | 7 cut(s) | 115, 180, 370, 397, 535, 709, 850 |
| Lsp1109I | GCAGC | 6 cut(s) | 94, 139, 218, 526, 688, 840 |
| LweI | GCATC | 8 cut(s) | 19, 274, 284, 472, 570, 749, 793, 1004 |
| MaeI | CTAG | 1 cut(s) | 930 |
| MaeII | ACGT | 3 cut(s) | 61, 563, 921 |
| MaeIII | GTNAC | 3 cut(s) | 559, 917, 932 |
| MalI | GATC | 5 cut(s) | 12, 93, 410, 834, 1116 |
| MboI | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| MboII | GAAGA | 2 cut(s) | 337, 441 |
| MhlI | GDGCHC | 4 cut(s) | 120, 594, 900, 963 |
| MlsI | TGGCCA | 1 cut(s) | 462 |
| MluCI | AATT | 2 cut(s) | 423, 723 |
| MluNI | TGGCCA | 1 cut(s) | 462 |
| MlyI | GAGTC | 1 cut(s) | 925 |
| MmeI | TCCRAC | 1 cut(s) | 436 |
| Mox20I | TGGCCA | 1 cut(s) | 462 |
| MroNI | GCCGGC | 2 cut(s) | 287, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1094 |
| MscI | TGGCCA | 1 cut(s) | 462 |
| MseI | TTAA | 2 cut(s) | 498, 552 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| Msp20I | TGGCCA | 1 cut(s) | 462 |
| MspA1I | CMGCKG | 1 cut(s) | 701 |
| MspI | CCGG | 4 cut(s) | 288, 533, 620, 783 |
| MspR9I | CCNGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| Mva1269I | GAATGC | 2 cut(s) | 109, 154 |
| MvaI | CCWGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 203, 536, 589, 668, 1029 |
| NaeI | GCCGGC | 2 cut(s) | 289, 621 |
| NdeII | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| NgoMIV | GCCGGC | 2 cut(s) | 287, 619 |
| NlaIII | CATG | 6 cut(s) | 244, 422, 461, 506, 527, 1063 |
| NlaIV | GGNNCC | 5 cut(s) | 325, 393, 531, 769, 770 |
| NmuCI | GTSAC | 2 cut(s) | 559, 917 |
| NspI | RCATGY | 1 cut(s) | 527 |
| PciI | ACATGT | 1 cut(s) | 523 |
| PctI | GAATGC | 2 cut(s) | 109, 154 |
| PdiI | GCCGGC | 2 cut(s) | 289, 621 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1094 |
| PfeI | GAWTC | 2 cut(s) | 635, 640 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 218, 713 |
| PfoI | TCCNGGA | 1 cut(s) | 166 |
| PkrI | GCNGC | 6 cut(s) | 109, 154, 208, 541, 703, 855 |
| PleI | GAGTC | 1 cut(s) | 924 |
| PpsI | GAGTC | 1 cut(s) | 924 |
| Ppu21I | YACGTR | 1 cut(s) | 922 |
| PpuMI | RGGWCCY | 1 cut(s) | 768 |
| PscI | ACATGT | 1 cut(s) | 523 |
| Psp5II | RGGWCCY | 1 cut(s) | 768 |
| Psp6I | CCWGG | 5 cut(s) | 119, 166, 352, 654, 735 |
| PspGI | CCWGG | 5 cut(s) | 119, 166, 352, 654, 735 |
| PspN4I | GGNNCC | 5 cut(s) | 325, 393, 531, 769, 770 |
| PspPI | GGNCC | 4 cut(s) | 617, 768, 824, 1078 |
| PspPPI | RGGWCCY | 1 cut(s) | 768 |
| PstNI | CAGNNNCTG | 1 cut(s) | 133 |
| PvuII | CAGCTG | 1 cut(s) | 701 |
| RsaI | GTAC | 4 cut(s) | 223, 229, 325, 375 |
| RsaNI | GTAC | 4 cut(s) | 222, 228, 324, 374 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SaqAI | TTAA | 2 cut(s) | 498, 552 |
| SatI | GCNGC | 6 cut(s) | 108, 153, 207, 540, 702, 854 |
| Sau3AI | GATC | 5 cut(s) | 10, 91, 408, 832, 1114 |
| Sau96I | GGNCC | 4 cut(s) | 617, 768, 824, 1078 |
| SchI | GAGTC | 1 cut(s) | 925 |
| ScrFI | CCNGG | 5 cut(s) | 121, 168, 354, 656, 737 |
| SduI | GDGCHC | 4 cut(s) | 120, 594, 900, 963 |
| SfaNI | GCATC | 8 cut(s) | 19, 274, 284, 472, 570, 749, 793, 1004 |
| SfcI | CTRYAG | 1 cut(s) | 843 |
| SinI | GGWCC | 3 cut(s) | 768, 824, 1078 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 1 cut(s) | 96 |
| SmoI | CTYRAG | 1 cut(s) | 96 |
| Sse9I | AATT | 2 cut(s) | 423, 723 |
| SspMI | CTAG | 1 cut(s) | 930 |
| StyD4I | CCNGG | 5 cut(s) | 119, 166, 352, 654, 735 |
| TaaI | ACNGT | 2 cut(s) | 667, 1095 |
| TaiI | ACGT | 3 cut(s) | 64, 566, 924 |
| TaqI | TCGA | 6 cut(s) | 556, 594, 638, 677, 710, 957 |
| TasI | AATT | 2 cut(s) | 423, 723 |
| TatI | WGTACW | 1 cut(s) | 227 |
| TfiI | GAWTC | 2 cut(s) | 635, 640 |
| Tru1I | TTAA | 2 cut(s) | 498, 552 |
| Tru9I | TTAA | 2 cut(s) | 498, 552 |
| TscAI | CASTG | 1 cut(s) | 637 |
| TseFI | GTSAC | 2 cut(s) | 559, 917 |
| TseI | GCWGC | 6 cut(s) | 107, 152, 206, 539, 701, 853 |
| Tsp45I | GTSAC | 2 cut(s) | 559, 917 |
| TspDTI | ATGAA | 4 cut(s) | 435, 446, 1076, 1088 |
| TspGWI | ACGGA | 2 cut(s) | 88, 201 |
| TspRI | CASTG | 1 cut(s) | 637 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 218, 713 |
| VpaK11BI | GGWCC | 3 cut(s) | 768, 824, 1078 |
| XceI | RCATGY | 1 cut(s) | 527 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1094 |
| XspI | CTAG | 1 cut(s) | 930 |
| ZraI | GACGTC | 1 cut(s) | 564 |