Rorug06G0260900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000336
Physical Location & Seq
Forward (+)
40761715 .. 40762587
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0260900.1

Sequence Viewer

Length: 873 bp
ATGGCTATTGAAATGTTCCGGGAAATGATGAAACGAGGACTTAAGCCAAATAGCATTACTTTTGTTGAAGTATTAAATGCATGTAGCCATGGGGGTTTGGTGGAGTTGGGGTTTGAGATATTTCATTCCATGACTAACAGTCACGGCATTCAACCGCAAATAGAACAACACTATGGATGCATGGTTGATCTTCTAGCTCGTGCAGGACGGATTGAAGATGCGTATAGTTTCATTGAAAGGATGAAAATGGCACCAGATCATATCATGTTGGGGGCTTTGCTAAGTGCTTGTAAAATCCACGGAAACCTCGAATTAGGAGAAAGGGTAGCTGAAATGTTGGTAAACTGTGATGCTGCAGATTCAGGGACTTTCGTTTTGCTGTCAAATGTGTATGCTGCATCAGGGAAGTGGGAAGAGGCTGCACGAGTCAGAGCTTTGACCAAGGAAGCTGGAACTCCAAAGGAGCCTGGTTGTAGTTTAATTGAAGTGAACAATGAGATCCATGAGTTCCTTTTGGGAGACATTAGACACCCACAGAAAGAAAATATCTACAGAAAGTTAGAGGAGCTAAACCCTGTGTTAAAAAGGGAAGGATACTCGCCGGCGACAAAGGTAGTTTTGCATGATATTGGGGAAAGGCAAAAGGAATGGGCTCTAGCAATACATAGTGAGAGGCTTGCCAAATGCTACGGACTAATCTCTACCAAACTGTGTACCACTTTAAGGATTGTGAAAAATTTGAGGGTTTGCAATGACTGCCACTCAATGATCAAGTTGATAGCTAAGATTACTAAGAGAAAGATAATAATGAGGGATCGCCATAGGTTCCATCATTTCGAGAATGGAGCTTGTTCTTGTGGTGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

32.83

Weight (kDa)

7.99

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 100 - 162 2.8e-18 E motif
DYW_deaminase PF14432 198 - 290 1.2e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 493, 822
AcsI RAATTY 1 cut(s) 736
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 1 cut(s) 723
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 6 cut(s) 11, 68, 152, 215, 236, 485
AhdI GACNNNNNGTC 1 cut(s) 138
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 7 cut(s) 197, 329, 434, 449, 568, 782, 848
AluI AGCT 7 cut(s) 197, 329, 434, 449, 568, 782, 848
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 2 cut(s) 493, 822
ApeKI GCWGC 3 cut(s) 353, 395, 419
ApoI RAATTY 1 cut(s) 736
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 872
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 655
BauI CACGAG 2 cut(s) 198, 423
BbvI GCAGC 3 cut(s) 340, 382, 406
BccI CCATC 1 cut(s) 837
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 468
BciVI GTATCC 1 cut(s) 587
BclI TGATCA 1 cut(s) 768
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 2 cut(s) 194, 656
BfmI CTRYAG 2 cut(s) 354, 550
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 587
BisI GCNGC 3 cut(s) 354, 396, 420
BlsI GCNGC 3 cut(s) 355, 397, 421
Bme1390I CCNGG 2 cut(s) 20, 468
BmeRI GACNNNNNGTC 1 cut(s) 138
BmiI GGNNCC 3 cut(s) 252, 465, 827
BmrFI CCNGG 2 cut(s) 20, 468
BmsI GCATC 4 cut(s) 167, 208, 340, 407
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 88, 298, 441
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 309, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 723
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 1 cut(s) 872
Bse3DI GCAATG 1 cut(s) 757
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 3 cut(s) 88, 298, 441
BseGI GGATG 2 cut(s) 182, 246
BseLI CCNNNNNNNGG 1 cut(s) 723
BseMI GCAATG 1 cut(s) 757
BseNI ACTGG 1 cut(s) 872
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 3 cut(s) 340, 382, 406
BsgI GTGCAG 2 cut(s) 222, 405
BshNI GGYRCC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 19, 602
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 723
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 5 cut(s) 187, 256, 498, 768, 814
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 252, 465, 827
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 2 cut(s) 493, 822
BspT107I GGYRCC 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 757
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 1 cut(s) 872
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 3 cut(s) 88, 298, 441
BssMI GATC 5 cut(s) 187, 256, 498, 768, 814
BssSI CACGAG 2 cut(s) 198, 423
BssT1I CCWWGG 2 cut(s) 88, 441
Bst2BI CACGAG 2 cut(s) 198, 423
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 140, 347, 711
Bst6I CTCTTC 1 cut(s) 408
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 756
BstC8I GCNNGC 2 cut(s) 603, 678
BstDEI CTNAG 3 cut(s) 281, 783, 792
BstDSI CCRYGG 2 cut(s) 88, 298
BstF5I GGATG 2 cut(s) 182, 246
BstKTI GATC 5 cut(s) 190, 259, 501, 771, 817
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 5 cut(s) 187, 256, 498, 768, 814
BstMWI GCNNNNNNNGC 1 cut(s) 756
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 2 cut(s) 18, 466
BstSFI CTRYAG 2 cut(s) 354, 550
BstV1I GCAGC 3 cut(s) 340, 382, 406
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BsuI GTATCC 1 cut(s) 587
BtgI CCRYGG 2 cut(s) 88, 298
BtsCI GGATG 2 cut(s) 182, 246
Cac8I GCNNGC 2 cut(s) 603, 678
Cfr10I RCCGGY 1 cut(s) 601
Csp6I GTAC 1 cut(s) 714
CviAII CATG 7 cut(s) 81, 89, 130, 181, 265, 503, 623
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 3 cut(s) 281, 783, 792
DpnI GATC 5 cut(s) 189, 258, 500, 770, 816
DpnII GATC 5 cut(s) 187, 256, 498, 768, 814
DriI GACNNNNNGTC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 408
Eam1105I GACNNNNNGTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 88, 441
Eco24I GRGCYC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 2 cut(s) 88, 441
EcoT22I ATGCAT 2 cut(s) 82, 182
EcoT38I GRGCYC 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 88, 441
FaeI CATG 7 cut(s) 84, 92, 133, 184, 268, 506, 626
FaqI GGGAC 1 cut(s) 379
FatI CATG 7 cut(s) 80, 88, 129, 180, 264, 502, 622
FbaI TGATCA 1 cut(s) 768
Fnu4HI GCNGC 3 cut(s) 354, 396, 420
FokI GGATG 2 cut(s) 189, 253
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 3 cut(s) 354, 396, 420
FspBI CTAG 2 cut(s) 194, 656
GluI GCNGC 3 cut(s) 354, 396, 420
HapII CCGG 2 cut(s) 19, 602
Hin1II CATG 7 cut(s) 84, 92, 133, 184, 268, 506, 626
HinfI GANTC 2 cut(s) 359, 426
HpaII CCGG 2 cut(s) 19, 602
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 3 cut(s) 343, 490, 714
Hpy188I TCNGA 1 cut(s) 431
Hpy188III TCNNGA 1 cut(s) 838
Hpy8I GTNNAC 3 cut(s) 343, 490, 714
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 3 cut(s) 140, 347, 711
HpyCH4V TGCA 8 cut(s) 80, 180, 203, 356, 398, 422, 622, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 756
HpyF3I CTNAG 3 cut(s) 281, 783, 792
Hsp92II CATG 7 cut(s) 84, 92, 133, 184, 268, 506, 626
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 5 cut(s) 187, 256, 498, 768, 814
LmnI GCTCC 3 cut(s) 463, 565, 845
Lsp1109I GCAGC 3 cut(s) 340, 382, 406
LweI GCATC 4 cut(s) 167, 208, 340, 407
MaeI CTAG 2 cut(s) 194, 656
MaeIII GTNAC 1 cut(s) 140
MalI GATC 5 cut(s) 189, 258, 500, 770, 816
MboI GATC 5 cut(s) 187, 256, 498, 768, 814
MboII GAAGA 3 cut(s) 182, 227, 425
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 3 cut(s) 311, 480, 736
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 7 cut(s) 29, 317, 409, 556, 666, 735, 804
Mph1103I ATGCAT 2 cut(s) 82, 182
MreI CGCCGGCG 1 cut(s) 601
MroNI GCCGGC 1 cut(s) 601
MseI TTAA 5 cut(s) 42, 74, 479, 581, 722
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 2 cut(s) 19, 602
MspR9I CCNGG 2 cut(s) 20, 468
Mva1269I GAATGC 1 cut(s) 147
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 756
NaeI GCCGGC 1 cut(s) 603
NciI CCSGG 1 cut(s) 20
NcoI CCATGG 1 cut(s) 88
NdeII GATC 5 cut(s) 187, 256, 498, 768, 814
NgoMIV GCCGGC 1 cut(s) 601
NlaIII CATG 7 cut(s) 84, 92, 133, 184, 268, 506, 626
NlaIV GGNNCC 3 cut(s) 252, 465, 827
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 2 cut(s) 82, 182
NspI RCATGY 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 3 cut(s) 355, 397, 421
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 252, 465, 827
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
SaqAI TTAA 5 cut(s) 42, 74, 479, 581, 722
SatI GCNGC 3 cut(s) 354, 396, 420
Sau3AI GATC 5 cut(s) 187, 256, 498, 768, 814
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 20, 468
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 4 cut(s) 167, 208, 340, 407
SfcI CTRYAG 2 cut(s) 354, 550
SgrAI CRCCGGYG 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 3 cut(s) 311, 480, 736
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 194, 656
StyD4I CCNGG 2 cut(s) 18, 466
StyI CCWWGG 2 cut(s) 88, 441
TaaI ACNGT 3 cut(s) 140, 347, 711
TaqI TCGA 2 cut(s) 309, 837
TasI AATT 3 cut(s) 311, 480, 736
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 5 cut(s) 42, 74, 479, 581, 722
Tru9I TTAA 5 cut(s) 42, 74, 479, 581, 722
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 353, 395, 419
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 44, 113, 220, 257
TspGWI ACGGA 3 cut(s) 223, 315, 705
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 1 cut(s) 736
XceI RCATGY 1 cut(s) 84
XspI CTAG 2 cut(s) 194, 656
Zsp2I ATGCAT 2 cut(s) 82, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.