Rmu_sc0003823.1_g000005

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003823.1
OG0000336
Physical Location & Seq
Forward (+)
35431 .. 36675
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003823.1_g000005.1.cds

Sequence Viewer

Length: 1005 bp
atgtatctggtggggaagttgctgacggctagggcttttaataaaagatcgttcatgggcatgttccgttgtgcatggagattgaatggacagtacaccgctcaagaacatggagaccgttttctgttcaccttgatggatccaactgaccgcagccgcatcattcgcattggtccttggggttttgatagagctctggttgtcctagcactgtatgacggggtgggagcgatcaaggatgtcccgctctctaccttagccttctggatcaagcctgtgattttccgatgtagcttcacggtggatgatgggattgacgtagatctggatttcttctttgaaaacctctatggaagatgtcaagattgtggtttgattactcatgtgggtttaccatgtgctgggccacccttaccggcggagccgagtccacaagttggactcgagagatttctgccagtagccaaaccaaatgggaggaaggaaatcaagcgtaagattgttaccggcggtggtgaaggaagttttggagtccgcaaggcacttgtgcctgagctggtggagactggcagtgaaccaacttcgggaggtccagggcaggagctgattggcagtggtagttctgtggagaaggagatgttggaggcagctccgagttgtggtatgcgtcgaaaatgtgtggatgaagaggatagctctccaaagaagctgcgactgagtctagctgtaggtaggacaaacttggatgctatgacaatgggattgtgtcatgtgaaacccatgaaggaagtatacaagaagaggctgggaaggccaaagggggcaaagaataaggcaaaggagcttaaagtggtgcatgtttcccttatgaagaagtcaccagtagagaagatcaaggctcctaggaatgaggataaattggtgaatagtttaccgaagttcaccgtggtggaagcagttcatggttccaacctatcaaagggtaaggagccaatagttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

334

Amino Acids

36.7

Weight (kDa)

9.47

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 401, 437
AccBSI CCGCTC 2 cut(s) 101, 247
AccI GTMKAC 1 cut(s) 792
AciI CCGC 7 cut(s) 99, 151, 157, 245, 419, 510, 535
AclWI GGATC 3 cut(s) 134, 147, 275
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 5 cut(s) 401, 437, 584, 659, 979
AgsI TTSAA 2 cut(s) 85, 341
AjnI CCWGG 1 cut(s) 592
AjuI GAANNNNNNNTTGG 4 cut(s) 510, 542, 623, 655
AleI CACNNNNGTG 1 cut(s) 947
AluBI AGCT 9 cut(s) 194, 294, 556, 604, 650, 696, 709, 725, 844
AluI AGCT 9 cut(s) 194, 294, 556, 604, 650, 696, 709, 725, 844
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 108, 557
AlwI GGATC 3 cut(s) 134, 147, 275
AlwNI CAGNNNCTG 1 cut(s) 604
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 2 cut(s) 404, 812
ApeKI GCWGC 3 cut(s) 153, 647, 709
Asp700I GAANNNNTTC 1 cut(s) 957
AspA2I CCTAGG 1 cut(s) 902
AspS9I GGNCC 3 cut(s) 173, 404, 590
AsuHPI GGTGA 5 cut(s) 121, 527, 870, 934, 934
AvaI CYCGRG 1 cut(s) 443
AvaII GGWCC 2 cut(s) 173, 590
AvrII CCTAGG 1 cut(s) 902
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 196
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 3 cut(s) 165, 659, 696
BccI CCATC 2 cut(s) 130, 302
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 108, 557
BfaI CTAG 4 cut(s) 30, 206, 722, 903
BfmI CTRYAG 1 cut(s) 726
BglII AGATCT 1 cut(s) 322
BisI GCNGC 4 cut(s) 154, 157, 648, 710
BlnI CCTAGG 1 cut(s) 902
BlsI GCNGC 4 cut(s) 155, 158, 649, 711
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 2 cut(s) 173, 590
BmeT110I CYCGRG 1 cut(s) 443
BmgT120I GGNCC 3 cut(s) 173, 404, 590
BmiI GGNNCC 5 cut(s) 141, 423, 900, 967, 990
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 2 cut(s) 168, 736
BplI GAGNNNNNCTC 2 cut(s) 680, 712
Bpu10I CCTNAGC 2 cut(s) 256, 552
BpuEI CTTGAG 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 4 cut(s) 176, 593, 902, 945
Bsc4I CCNNNNNNNGG 5 cut(s) 401, 437, 584, 659, 979
Bse118I RCCGGY 2 cut(s) 415, 506
Bse1I ACTGG 3 cut(s) 458, 571, 881
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 4 cut(s) 176, 593, 902, 945
BseGI GGATG 4 cut(s) 244, 310, 688, 751
BseLI CCNNNNNNNGG 5 cut(s) 401, 437, 584, 659, 979
BseMII CTCAG 2 cut(s) 543, 707
BseNI ACTGG 3 cut(s) 458, 571, 881
BseXI GCAGC 3 cut(s) 165, 659, 696
BseYI CCCAGC 2 cut(s) 401, 805
BshFI GGCC 2 cut(s) 406, 814
BsiHKAI GWGCWC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 416, 507
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 5 cut(s) 401, 437, 584, 659, 979
BsmAI GTCTC 2 cut(s) 108, 557
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 406, 814
Bso31I GGTCTC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 6 cut(s) 47, 139, 231, 267, 322, 891
BspACI CCGC 7 cut(s) 99, 151, 157, 245, 419, 510, 535
BspANI GGCC 2 cut(s) 406, 814
BspCNI CTCAG 2 cut(s) 544, 708
BspLI GGNNCC 5 cut(s) 141, 423, 900, 967, 990
BspPI GGATC 3 cut(s) 134, 147, 275
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 2 cut(s) 101, 247
BsrFI RCCGGY 2 cut(s) 415, 506
BsrI ACTGG 3 cut(s) 458, 571, 881
BssAI RCCGGY 2 cut(s) 415, 506
BssECI CCNNGG 4 cut(s) 176, 593, 902, 945
BssMI GATC 6 cut(s) 47, 139, 231, 267, 322, 891
BssNAI GTATAC 1 cut(s) 793
BssT1I CCWWGG 2 cut(s) 176, 902
Bst1107I GTATAC 1 cut(s) 793
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 5 cut(s) 93, 119, 213, 301, 946
Bst6I CTCTTC 2 cut(s) 681, 794
BstDEI CTNAG 3 cut(s) 256, 552, 716
BstDSI CCRYGG 1 cut(s) 945
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 4 cut(s) 244, 310, 688, 751
BstKTI GATC 6 cut(s) 50, 142, 234, 270, 325, 894
BstMAI GTCTC 2 cut(s) 108, 557
BstMBI GATC 6 cut(s) 47, 139, 231, 267, 322, 891
BstMWI GCNNNNNNNGC 2 cut(s) 165, 811
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 2 cut(s) 64, 860
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 3 cut(s) 165, 659, 696
BstX2I RGATCY 2 cut(s) 139, 322
BstYI RGATCY 2 cut(s) 139, 322
BstZ17I GTATAC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 406, 814
BtgI CCRYGG 1 cut(s) 945
BtsCI GGATG 4 cut(s) 244, 310, 688, 751
BtsI GCAGTG 2 cut(s) 577, 619
BtsIMutI CAGTG 3 cut(s) 209, 577, 619
CaiI CAGNNNCTG 1 cut(s) 604
Cfr10I RCCGGY 2 cut(s) 415, 506
Cfr13I GGNCC 3 cut(s) 173, 404, 590
CseI GACGC 1 cut(s) 656
Csp6I GTAC 1 cut(s) 94
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 3 cut(s) 256, 552, 716
DpnI GATC 6 cut(s) 49, 141, 233, 269, 324, 893
DpnII GATC 6 cut(s) 47, 139, 231, 267, 322, 891
Eam1104I CTCTTC 2 cut(s) 681, 794
EarI CTCTTC 2 cut(s) 681, 794
EciI GGCGGA 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 176, 902
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 173, 590
Eco53kI GAGCTC 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 2 cut(s) 176, 902
EcoT38I GRGCYC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 176, 902
FaqI GGGAC 1 cut(s) 227
FauI CCCGC 1 cut(s) 252
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 4 cut(s) 154, 157, 648, 710
FokI GGATG 4 cut(s) 251, 317, 695, 758
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 4 cut(s) 154, 157, 648, 710
FspBI CTAG 4 cut(s) 30, 206, 722, 903
GluI GCNGC 4 cut(s) 154, 157, 648, 710
GsaI CCCAGC 2 cut(s) 405, 809
HaeIII GGCC 2 cut(s) 406, 814
HapII CCGG 2 cut(s) 416, 507
HgaI GACGC 1 cut(s) 656
HinfI GANTC 4 cut(s) 427, 441, 531, 718
HpaII CCGG 2 cut(s) 416, 507
HphI GGTGA 5 cut(s) 121, 527, 870, 934, 934
Hpy166II GTNNAC 8 cut(s) 96, 129, 392, 431, 575, 793, 932, 942
Hpy188I TCNGA 2 cut(s) 287, 654
Hpy188III TCNNGA 6 cut(s) 104, 265, 326, 362, 445, 585
Hpy8I GTNNAC 8 cut(s) 96, 129, 392, 431, 575, 793, 932, 942
Hpy99I CGWCG 1 cut(s) 672
HpyAV CCTTC 6 cut(s) 271, 475, 512, 625, 778, 804
HpyCH4III ACNGT 5 cut(s) 93, 119, 213, 301, 946
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 74, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 811
HpyF3I CTNAG 3 cut(s) 256, 552, 716
HpySE526I ACGT 1 cut(s) 318
Kzo9I GATC 6 cut(s) 47, 139, 231, 267, 322, 891
LmnI GCTCC 7 cut(s) 227, 421, 601, 655, 841, 904, 988
Lsp1109I GCAGC 3 cut(s) 165, 659, 696
LweI GCATC 2 cut(s) 168, 736
MaeI CTAG 4 cut(s) 30, 206, 722, 903
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 502, 876
MalI GATC 6 cut(s) 49, 141, 233, 269, 324, 893
MbiI CCGCTC 2 cut(s) 101, 247
MboI GATC 6 cut(s) 47, 139, 231, 267, 322, 891
MboII GAAGA 6 cut(s) 325, 366, 698, 811, 883, 901
MflI RGATCY 2 cut(s) 139, 322
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 1 cut(s) 917
MlyI GAGTC 4 cut(s) 435, 436, 540, 727
MmeI TCCRAC 4 cut(s) 167, 418, 621, 993
MnlI CCTC 7 cut(s) 356, 471, 581, 637, 682, 795, 904
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 2 cut(s) 39, 846
MslI CAYNNNNRTG 3 cut(s) 59, 134, 947
MspI CCGG 2 cut(s) 416, 507
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 2 cut(s) 165, 811
NdeII GATC 6 cut(s) 47, 139, 231, 267, 322, 891
NlaIV GGNNCC 5 cut(s) 141, 423, 900, 967, 990
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 876
NspI RCATGY 2 cut(s) 64, 860
OliI CACNNNNGTG 1 cut(s) 947
PaeR7I CTCGAG 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 957
PflFI GACNNNGTC 1 cut(s) 717
PflMI CCANNNNNTGG 2 cut(s) 401, 437
PkrI GCNGC 4 cut(s) 155, 158, 649, 711
PleI GAGTC 4 cut(s) 435, 435, 539, 726
PpsI GAGTC 4 cut(s) 435, 435, 539, 726
Psp124BI GAGCTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 592
PspFI CCCAGC 2 cut(s) 401, 805
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 5 cut(s) 141, 423, 900, 967, 990
PspPI GGNCC 3 cut(s) 173, 404, 590
PstNI CAGNNNCTG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 139, 322
PsyI GACNNNGTC 1 cut(s) 717
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 3 cut(s) 59, 134, 947
SacI GAGCTC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 39, 846
SatI GCNGC 4 cut(s) 154, 157, 648, 710
Sau3AI GATC 6 cut(s) 47, 139, 231, 267, 322, 891
Sau96I GGNCC 3 cut(s) 173, 404, 590
SchI GAGTC 4 cut(s) 435, 436, 540, 727
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 1 cut(s) 196
SfaNI GCATC 2 cut(s) 168, 736
SfcI CTRYAG 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 2 cut(s) 173, 590
SlaI CTCGAG 1 cut(s) 443
SmiMI CAYNNNNRTG 3 cut(s) 59, 134, 947
SmlI CTYRAG 2 cut(s) 102, 443
SmoI CTYRAG 2 cut(s) 102, 443
Sse9I AATT 1 cut(s) 917
SsiI CCGC 7 cut(s) 99, 151, 157, 245, 419, 510, 535
SspMI CTAG 4 cut(s) 30, 206, 722, 903
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 2 cut(s) 176, 902
TaaI ACNGT 5 cut(s) 93, 119, 213, 301, 946
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 444, 670
TasI AATT 1 cut(s) 917
TatI WGTACW 1 cut(s) 93
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 39, 846
Tru9I TTAA 2 cut(s) 39, 846
TscAI CASTG 3 cut(s) 216, 577, 619
TseFI GTSAC 1 cut(s) 876
TseI GCWGC 3 cut(s) 153, 647, 709
Tsp45I GTSAC 1 cut(s) 876
TspDTI ATGAA 5 cut(s) 43, 699, 797, 884, 950
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 216, 577, 619
Tth111I GACNNNGTC 1 cut(s) 717
Van91I CCANNNNNTGG 2 cut(s) 401, 437
VpaK11BI GGWCC 2 cut(s) 173, 590
XagI CCTNNNNNAGG 1 cut(s) 977
XceI RCATGY 2 cut(s) 64, 860
XhoI CTCGAG 1 cut(s) 443
XmaJI CCTAGG 1 cut(s) 902
XmiI GTMKAC 1 cut(s) 792
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 4 cut(s) 30, 206, 722, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.