Rh7CG488700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000336
Physical Location & Seq
Reverse (-)
65778587 .. 65778904
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG488700.1

Sequence Viewer

Length: 318 bp
ATGCTGGATAGTGGTGGTAGCAGTGGTGATGGCACAAGTGAGCAAGTTGGGGTTGTCGAGACAGCCAATAAGGCTGCGCAAGTTAGTGGTGAGGATCAGGGCAGTGGCTCCAAGGTTGTGCAGATCGCAGGAAACGGTCTGACATGGTTGGTGTGTCGCCCAAGAAGCCTAGGCTTAGTCTTGCTGTGGGCAGGACTAACCTTAAAGTTGTGTCTATGGGTCTGGCAATTGTGCAGACGCTACAAGATGCTCCGAAGAAATAGGGGAAGCCAAGAGTTTGACAAGTCCAAGGTAGTCAAGACGTCACCAATCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.39

Weight (kDa)

9.78

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 78
AclWI GGATC 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 74
AspA2I CCTAGG 1 cut(s) 169
AspLEI GCGC 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 38, 101, 297
AvrII CCTAGG 1 cut(s) 169
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 1 cut(s) 75
BlnI CCTAGG 1 cut(s) 169
BlsI GCNGC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 111, 169, 288
BseDI CCNNGG 3 cut(s) 111, 169, 288
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 2 cut(s) 140, 253
BsmAI GTCTC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 94, 123
BspLI GGNNCC 1 cut(s) 109
BspPI GGATC 1 cut(s) 102
BssECI CCNNGG 3 cut(s) 111, 169, 288
BssMI GATC 2 cut(s) 94, 123
BssNI GRCGYC 1 cut(s) 302
BssT1I CCWWGG 3 cut(s) 111, 169, 288
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 97, 126
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 94, 123
BstMWI GCNNNNNNNGC 2 cut(s) 71, 165
BstV1I GCAGC 1 cut(s) 61
BtsI GCAGTG 2 cut(s) 28, 109
BtsIMutI CAGTG 2 cut(s) 28, 109
CfoI GCGC 1 cut(s) 79
CseI GACGC 1 cut(s) 246
CviAII CATG 1 cut(s) 144
CviJI RGCY 6 cut(s) 65, 74, 108, 168, 174, 270
CviKI_1 RGCY 6 cut(s) 65, 74, 108, 168, 174, 270
DdeI CTNAG 1 cut(s) 175
DpnI GATC 2 cut(s) 96, 125
DpnII GATC 2 cut(s) 94, 123
Eco130I CCWWGG 3 cut(s) 111, 169, 288
EcoT14I CCWWGG 3 cut(s) 111, 169, 288
ErhI CCWWGG 3 cut(s) 111, 169, 288
FaeI CATG 1 cut(s) 147
FaiI YATR 2 cut(s) 145, 217
FatI CATG 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 170
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 75
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 1 cut(s) 147
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HphI GGTGA 3 cut(s) 38, 101, 297
Hpy188I TCNGA 2 cut(s) 141, 254
Hpy188III TCNNGA 2 cut(s) 58, 298
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 121, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 165
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 1 cut(s) 147
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 94, 123
LmnI GCTCC 2 cut(s) 113, 255
LpnPI CCDG 4 cut(s) 83, 114, 177, 208
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 96, 125
MboI GATC 2 cut(s) 94, 123
MboII GAAGA 1 cut(s) 267
MfeI CAATTG 1 cut(s) 227
MluCI AATT 1 cut(s) 227
MnlI CCTC 1 cut(s) 85
MseI TTAA 1 cut(s) 203
MunI CAATTG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 71, 165
NdeII GATC 2 cut(s) 94, 123
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 303
NsbI TGCGCA 1 cut(s) 78
PkrI GCNGC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 94, 123
SetI ASST 4 cut(s) 117, 203, 294, 305
SfaNI GCATC 1 cut(s) 237
Sse9I AATT 1 cut(s) 227
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 3 cut(s) 111, 169, 288
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 227
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 2 cut(s) 28, 109
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 303
TspRI CASTG 2 cut(s) 28, 109
XmaJI CCTAGG 1 cut(s) 169
XspI CTAG 1 cut(s) 170
ZraI GACGTC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.