Rmu_sc0015038.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015038.1
OG0000336
Physical Location & Seq
Forward (+)
5174 .. 6522
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015038.1_g000002.1.cds

Sequence Viewer

Length: 1074 bp
atggccgtgcgcttggctgcatccttgggactggcaaatgcggcctgccggtggacctgcggccttcgtgtgattctccgaggtggtccgtggagttttgacagagctccggtggttttggcaccatatgatggagttggagcaatcaaagatgtaccgcatactaaactagctttctggatcaagatgcgtgggttaccgccagattttcacatagaccactgtcttagaaggatcggcaatgcaataggttggtatgttcaaaaggacaccacagagtttgatgcaagaagaatccagattcgggttgaattggacttgctgcagcctatcatctttcgtcgtagcttcaccgtagatgatggtattgtggtggatttggagttcttcttcaagaatttgtatggcagatgcagggattgtggacttttcactcatgttggtttgccatgttctggaactcctctgccaacagagctgcaaactgatactcctttagttgggttagagaggtttatgccgactgctaagcctaaggtgaggaaagaaatacgtcagaggccttccgttgttagtggagaggatagctccggggtgcagacatactcaaatgcgacggacctggatgttagtagtgagccaaagtctgatggctcgagtaaggggatagttagtgtagacaattcgacagaacatgcaccaagtcatgcaatggattctcatagttgtggcaagcgtcgtaagtgtgtagatgaggatgggattcctccaaagaagatgagattcaacttgccagttggaagaactaacgtagatgctatgaccatgggtttgtgcaatgtgaaactggtcaaaaaggtttacaagaagagaggcaggccgaaaggtacaaaaaacaaggccaaggagctcaaggttgttcaagcttcttctatgaagaagtccccatcaaagaagagtaagtctccaagaaaagaggaaaagttggtgaatggtttgcctgcatttactttagttgaggttgtcaatggtcttaaccaatctaaggggaaggaacctatagttgttcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

357

Amino Acids

39.49

Weight (kDa)

9.73

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 121
AccB7I CCANNNNNTGG 2 cut(s) 131, 455
AccI GTMKAC 1 cut(s) 678
AciI CCGC 4 cut(s) 41, 60, 158, 200
AclWI GGATC 2 cut(s) 188, 242
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 2 cut(s) 156, 889
AfiI CCNNNNNNNGG 6 cut(s) 51, 131, 304, 455, 500, 1045
AgsI TTSAA 5 cut(s) 263, 311, 394, 787, 923
AjnI CCWGG 1 cut(s) 621
AloI GAACNNNNNNTCC 2 cut(s) 368, 400
AluBI AGCT 7 cut(s) 107, 173, 348, 478, 588, 910, 926
AluI AGCT 7 cut(s) 107, 173, 348, 478, 588, 910, 926
Alw21I GWGCWC 2 cut(s) 109, 912
Alw26I GTCTC 1 cut(s) 969
AlwI GGATC 2 cut(s) 188, 242
Ama87I CYCGRG 1 cut(s) 655
AoxI GGCC 6 cut(s) 3, 42, 61, 560, 878, 900
ApeKI GCWGC 4 cut(s) 17, 322, 325, 478
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 814, 846
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 3 cut(s) 54, 86, 619
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 3 cut(s) 343, 550, 1000
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 3 cut(s) 54, 86, 619
AxyI CCTNAGG 1 cut(s) 534
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 109, 912
Bbv12I GWGCWC 2 cut(s) 109, 912
BbvI GCAGC 4 cut(s) 4, 309, 337, 465
BccI CCATC 5 cut(s) 125, 356, 644, 752, 955
BciT130I CCWGG 1 cut(s) 623
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 969
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 2 cut(s) 323, 1059
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 6 cut(s) 18, 42, 61, 323, 326, 479
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 6 cut(s) 19, 43, 62, 324, 327, 480
Bme1390I CCNGG 2 cut(s) 592, 623
Bme18I GGWCC 3 cut(s) 54, 86, 619
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 3 cut(s) 54, 86, 619
BmiI GGNNCC 2 cut(s) 123, 1056
BmrFI CCNGG 2 cut(s) 592, 623
BmsI GCATC 5 cut(s) 29, 177, 274, 401, 805
BoxI GACNNNNGTC 1 cut(s) 222
BplI GAGNNNNNCTC 4 cut(s) 572, 604, 949, 981
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 592
BsaJI CCNNGG 6 cut(s) 24, 79, 89, 591, 825, 903
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 6 cut(s) 51, 131, 304, 455, 500, 1045
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 36, 794, 852
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 3 cut(s) 247, 717, 844
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 6 cut(s) 24, 79, 89, 591, 825, 903
BseGI GGATG 3 cut(s) 20, 631, 763
BseLI CCNNNNNNNGG 6 cut(s) 51, 131, 304, 455, 500, 1045
BseMI GCAATG 3 cut(s) 247, 717, 844
BseNI ACTGG 3 cut(s) 36, 794, 852
BseRI GAGGAG 1 cut(s) 453
BseXI GCAGC 4 cut(s) 4, 309, 337, 465
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 6 cut(s) 5, 44, 63, 562, 880, 902
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 109, 912
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 3 cut(s) 49, 110, 591
BslFI GGGAC 2 cut(s) 42, 928
BslI CCNNNNNNNGG 6 cut(s) 51, 131, 304, 455, 500, 1045
BsmAI GTCTC 1 cut(s) 969
BsmFI GGGAC 2 cut(s) 42, 928
BsnI GGCC 6 cut(s) 5, 44, 63, 562, 880, 902
BsoBI CYCGRG 1 cut(s) 655
Bsp1286I GDGCHC 2 cut(s) 109, 912
Bsp143I GATC 2 cut(s) 180, 234
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 4 cut(s) 41, 60, 158, 200
BspANI GGCC 6 cut(s) 5, 44, 63, 562, 880, 902
BspLI GGNNCC 2 cut(s) 123, 1056
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 188, 242
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 247, 717, 844
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 3 cut(s) 36, 794, 852
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 6 cut(s) 24, 79, 89, 591, 825, 903
BssMI GATC 2 cut(s) 180, 234
BssT1I CCWWGG 3 cut(s) 24, 825, 903
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 224, 355
Bst6I CTCTTC 2 cut(s) 863, 950
BstC8I GCNNGC 4 cut(s) 46, 734, 878, 1002
BstDEI CTNAG 4 cut(s) 227, 528, 534, 1044
BstDSI CCRYGG 2 cut(s) 89, 825
BstEII GGTNACC 1 cut(s) 195
BstF5I GGATG 3 cut(s) 20, 631, 763
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 2 cut(s) 183, 237
BstMAI GTCTC 1 cut(s) 969
BstMBI GATC 2 cut(s) 180, 234
BstMWI GCNNNNNNNGC 2 cut(s) 41, 475
BstNI CCWGG 1 cut(s) 623
BstNSI RCATGY 1 cut(s) 698
BstPAI GACNNNNGTC 1 cut(s) 222
BstPI GGTNACC 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 590, 621
BstSFI CTRYAG 2 cut(s) 323, 1059
BstV1I GCAGC 4 cut(s) 4, 309, 337, 465
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 6 cut(s) 5, 44, 63, 562, 880, 902
BtgI CCRYGG 2 cut(s) 89, 825
BtsCI GGATG 3 cut(s) 20, 631, 763
BtsIMutI CAGTG 1 cut(s) 220
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 4 cut(s) 46, 734, 878, 1002
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 54, 86, 619
CseI GACGC 1 cut(s) 725
Csp6I GTAC 2 cut(s) 155, 888
CspCI CAANNNNNGTGG 4 cut(s) 172, 207, 262, 297
CviAII CATG 5 cut(s) 437, 450, 695, 707, 826
CviQI GTAC 2 cut(s) 155, 888
DdeI CTNAG 4 cut(s) 227, 528, 534, 1044
DpnI GATC 2 cut(s) 182, 236
DpnII GATC 2 cut(s) 180, 234
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 863, 950
EarI CTCTTC 2 cut(s) 863, 950
Ecl136II GAGCTC 2 cut(s) 107, 910
Eco130I CCWWGG 3 cut(s) 24, 825, 903
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 109, 912
Eco47I GGWCC 3 cut(s) 54, 86, 619
Eco53kI GAGCTC 2 cut(s) 107, 910
Eco81I CCTNAGG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 655
Eco91I GGTNACC 1 cut(s) 195
EcoICRI GAGCTC 2 cut(s) 107, 910
EcoO65I GGTNACC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 3 cut(s) 24, 825, 903
EcoT38I GRGCYC 2 cut(s) 109, 912
ErhI CCWWGG 3 cut(s) 24, 825, 903
FaeI CATG 5 cut(s) 440, 453, 698, 710, 829
FaqI GGGAC 2 cut(s) 42, 928
FatI CATG 5 cut(s) 436, 449, 694, 706, 825
FauNDI CATATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 678
Fnu4HI GCNGC 6 cut(s) 18, 42, 61, 323, 326, 479
FokI GGATG 3 cut(s) 7, 638, 770
FriOI GRGCYC 2 cut(s) 109, 912
Fsp4HI GCNGC 6 cut(s) 18, 42, 61, 323, 326, 479
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 11
GluI GCNGC 6 cut(s) 18, 42, 61, 323, 326, 479
HaeIII GGCC 6 cut(s) 5, 44, 63, 562, 880, 902
HapII CCGG 3 cut(s) 49, 110, 591
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 12
Hin1II CATG 5 cut(s) 440, 453, 698, 710, 829
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 6 cut(s) 73, 294, 301, 716, 763, 783
HpaII CCGG 3 cut(s) 49, 110, 591
HphI GGTGA 3 cut(s) 343, 550, 1000
Hpy166II GTNNAC 4 cut(s) 54, 425, 679, 862
Hpy188I TCNGA 3 cut(s) 80, 558, 649
Hpy188III TCNNGA 5 cut(s) 178, 184, 298, 394, 456
Hpy8I GTNNAC 4 cut(s) 54, 425, 679, 862
Hpy99I CGWCG 3 cut(s) 345, 619, 741
HpyAV CCTTC 4 cut(s) 74, 225, 573, 1045
HpyCH4III ACNGT 2 cut(s) 224, 355
HpyCH4IV ACGT 2 cut(s) 553, 810
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 475
HpyF3I CTNAG 4 cut(s) 227, 528, 534, 1044
HpySE526I ACGT 2 cut(s) 553, 810
Hsp92II CATG 5 cut(s) 440, 453, 698, 710, 829
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 2 cut(s) 180, 234
LmnI GCTCC 4 cut(s) 112, 140, 593, 907
Lsp1109I GCAGC 4 cut(s) 4, 309, 337, 465
LweI GCATC 5 cut(s) 29, 177, 274, 401, 805
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 553, 810
MaeIII GTNAC 1 cut(s) 195
MalI GATC 2 cut(s) 182, 236
MboI GATC 2 cut(s) 180, 234
MboII GAAGA 9 cut(s) 303, 379, 382, 787, 813, 880, 921, 949, 967
MhlI GDGCHC 2 cut(s) 109, 912
MluCI AATT 3 cut(s) 311, 397, 682
MmeI TCCRAC 2 cut(s) 118, 778
MseI TTAA 1 cut(s) 1035
MslI CAYNNNNRTG 1 cut(s) 726
MspI CCGG 3 cut(s) 49, 110, 591
MspR9I CCNGG 2 cut(s) 592, 623
MvaI CCWGG 1 cut(s) 623
MwoI GCNNNNNNNGC 2 cut(s) 41, 475
NciI CCSGG 1 cut(s) 592
NcoI CCATGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 127
NdeII GATC 2 cut(s) 180, 234
NlaIII CATG 5 cut(s) 440, 453, 698, 710, 829
NlaIV GGNNCC 2 cut(s) 123, 1056
NspI RCATGY 1 cut(s) 698
PaeR7I CTCGAG 1 cut(s) 655
PceI AGGCCT 1 cut(s) 562
PfeI GAWTC 6 cut(s) 73, 294, 301, 716, 763, 783
PflMI CCANNNNNTGG 2 cut(s) 131, 455
PkrI GCNGC 6 cut(s) 19, 43, 62, 324, 327, 480
PshAI GACNNNNGTC 1 cut(s) 222
Psp124BI GAGCTC 2 cut(s) 109, 912
Psp6I CCWGG 1 cut(s) 621
PspEI GGTNACC 1 cut(s) 195
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 2 cut(s) 123, 1056
PspPI GGNCC 3 cut(s) 54, 86, 619
PspXI VCTCGAGB 1 cut(s) 655
PstI CTGCAG 1 cut(s) 327
RsaI GTAC 2 cut(s) 156, 889
RsaNI GTAC 2 cut(s) 155, 888
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 2 cut(s) 109, 912
SaqAI TTAA 1 cut(s) 1035
SatI GCNGC 6 cut(s) 18, 42, 61, 323, 326, 479
Sau3AI GATC 2 cut(s) 180, 234
Sau96I GGNCC 3 cut(s) 54, 86, 619
ScrFI CCNGG 2 cut(s) 592, 623
SduI GDGCHC 2 cut(s) 109, 912
SfaNI GCATC 5 cut(s) 29, 177, 274, 401, 805
SfcI CTRYAG 2 cut(s) 323, 1059
Sfr274I CTCGAG 1 cut(s) 655
SinI GGWCC 3 cut(s) 54, 86, 619
SlaI CTCGAG 1 cut(s) 655
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 655, 911
SmoI CTYRAG 2 cut(s) 655, 911
Sse9I AATT 3 cut(s) 311, 397, 682
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 4 cut(s) 41, 60, 158, 200
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 2 cut(s) 109, 912
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 2 cut(s) 590, 621
StyI CCWWGG 3 cut(s) 24, 825, 903
TaaI ACNGT 2 cut(s) 224, 355
TaiI ACGT 2 cut(s) 556, 813
TaqI TCGA 2 cut(s) 656, 686
TasI AATT 3 cut(s) 311, 397, 682
TauI GCSGC 2 cut(s) 44, 63
TfiI GAWTC 6 cut(s) 73, 294, 301, 716, 763, 783
Tru1I TTAA 1 cut(s) 1035
Tru9I TTAA 1 cut(s) 1035
TscAI CASTG 1 cut(s) 227
TseI GCWGC 4 cut(s) 17, 322, 325, 478
TspDTI ATGAA 1 cut(s) 950
TspGWI ACGGA 3 cut(s) 78, 556, 632
TspRI CASTG 1 cut(s) 227
Van91I CCANNNNNTGG 2 cut(s) 131, 455
VpaK11BI GGWCC 3 cut(s) 54, 86, 619
XapI RAATTY 1 cut(s) 397
XceI RCATGY 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 678
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.