Rh5BG320000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000336
Physical Location & Seq
Reverse (-)
42873425 .. 42873700
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG320000.1

Sequence Viewer

Length: 276 bp
ATGGCTAGGGTTGATAACACCTCGGCGGCTGGCTCTTCCTTGGTGTTCGAAGCTCAGGTAGGTGGAGATGGGAATAGGCGTCTAAACCGGTTTATCCCGGCCTCGACTCTAAAGGCCCGTGCTCGGAGGGCGCTTCAACCCAGACCAGTAGGAGAGGGCTCTTCCGGTAGCAAGTTGGTACCTGAGGGTGATGGTCATGAGGTGCGGGGTTCCGAGCACTCGGAGAGTGAAGTCGAGGCTAATGCTGATGGTCTGGAGGCCAACGAGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.49

Weight (kDa)

5.1

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 178
AciI CCGC 2 cut(s) 26, 205
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 2 cut(s) 124, 219
AoxI GGCC 3 cut(s) 99, 114, 258
AsiGI ACCGGT 1 cut(s) 87
Asp718I GGTACC 1 cut(s) 178
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 200
AsuII TTCGAA 1 cut(s) 48
AxyI CCTNAGG 1 cut(s) 183
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 124, 219
BccI CCATC 4 cut(s) 62, 185, 242, 263
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 134
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 180, 211
BmrFI CCNGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 21, 39
BsaWI WCCGGW 2 cut(s) 87, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 146
Bse21I CCTNAGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 21, 39
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 68, 174
BseNI ACTGG 1 cut(s) 146
BshFI GGCC 3 cut(s) 101, 116, 260
BshNI GGYRCC 1 cut(s) 178
BshTI ACCGGT 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 124, 219
BsiSI CCGG 3 cut(s) 88, 98, 165
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 3 cut(s) 101, 116, 260
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 3 cut(s) 124, 161, 219
BspACI CCGC 2 cut(s) 26, 205
BspANI GGCC 3 cut(s) 101, 116, 260
BspCNI CTCAG 2 cut(s) 67, 175
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 180, 211
BspQI GCTCTTC 2 cut(s) 40, 166
BspT104I TTCGAA 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 21, 39
BssNI GRCGYC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 40, 166
BstACI GRCGYC 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 54, 183
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 3 cut(s) 101, 116, 260
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 87
CviAII CATG 1 cut(s) 197
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 54, 183
Eam1104I CTCTTC 2 cut(s) 40, 166
EarI CTCTTC 2 cut(s) 40, 166
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FatI CATG 1 cut(s) 196
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 3 cut(s) 101, 116, 260
HapII CCGG 3 cut(s) 88, 98, 165
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 106
HpaII CCGG 3 cut(s) 88, 98, 165
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 126, 214, 223
Hpy188III TCNNGA 2 cut(s) 197, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 54, 183
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 131
KpnI GGTACC 1 cut(s) 182
LguI GCTCTTC 2 cut(s) 40, 166
LpnPI CCDG 9 cut(s) 15, 41, 101, 111, 154, 159, 178, 195, 239
MaeI CTAG 1 cut(s) 6
MboII GAAGA 2 cut(s) 27, 153
MhlI GDGCHC 3 cut(s) 124, 161, 219
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 9 cut(s) 31, 112, 120, 148, 178, 193, 229, 250, 259
MspI CCGG 3 cut(s) 88, 98, 165
MspR9I CCNGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 98
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 2 cut(s) 180, 211
NspV TTCGAA 1 cut(s) 48
PagI TCATGA 1 cut(s) 196
PciSI GCTCTTC 2 cut(s) 40, 166
PinAI ACCGGT 1 cut(s) 87
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 180, 211
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SapI GCTCTTC 2 cut(s) 40, 166
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 3 cut(s) 124, 161, 219
SetI ASST 6 cut(s) 23, 55, 60, 64, 184, 204
SfuI TTCGAA 1 cut(s) 48
SsiI CCGC 2 cut(s) 26, 205
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 3 cut(s) 48, 104, 234
TauI GCSGC 1 cut(s) 29
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.