Rh2BG260600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000336
Physical Location & Seq
Forward (+)
27786288 .. 27786761
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG260600.1

Sequence Viewer

Length: 474 bp
ATGCATCCGGTCCCTCAGCTGCTTCAGGCGATTCAAGTTGTTGCACCGCATGCGCGTTGCAGATTGGAGCGGGTTTTGGCTTGGGTTCAAAATGTACCTATGGCTGGCCTTTCATTGGTCTTCAAAGCTCATGTCCCCGCTCCTGTGCCTCCAACACTGTCCAAGGTGGTGTTCGATGGTCTTCCAGTGACTACATTGAGGACTCACAGGTCTATGACTATCATGGAGCTCGATTCACCTGTTGCTTTAGCAGTGGTTGTTTGTGGTGTGAGGAGGAAGAGAGAGGGGGACAATAACTTGTCGCCCAAGAAATCAAGAATAAGCCTAGCAGTGGGGAAGACGAATATGAATGCTGAGTCTATGGGTTTGGTGTTGGTGACTACTACTCAACAGGTTCCCGAGAAGAGGGGATGTCCTAGAGGAGCAAAGAACAAGAAGCCTATTGAGGTCAAGCCAAGAAGAACTCCCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.17

Weight (kDa)

10.97

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 208
AccBSI CCGCTC 2 cut(s) 70, 140
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 47, 70, 138
AcuI CTGAAG 1 cut(s) 8
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 4 cut(s) 104, 115, 331, 405
AgsI TTSAA 3 cut(s) 35, 89, 124
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 19, 128, 229
AluI AGCT 3 cut(s) 19, 128, 229
Alw21I GWGCWC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 228, 388
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 3 cut(s) 112, 173, 344
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 170
BfaI CTAG 2 cut(s) 326, 417
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 12, 396
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 3 cut(s) 112, 173, 344
Bpu10I CCTNAGC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 115, 331, 405
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 4, 416
BseLI CCNNNNNNNGG 4 cut(s) 104, 115, 331, 405
BseMII CTCAG 2 cut(s) 29, 345
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 2 cut(s) 286, 435
BseXI GCAGC 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 119, 302
BslI CCNNNNNNNGG 4 cut(s) 104, 115, 331, 405
BsmFI GGGAC 2 cut(s) 119, 302
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 231
BspACI CCGC 3 cut(s) 47, 70, 138
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 28, 346
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 12, 396
BsrBI CCGCTC 2 cut(s) 70, 140
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 272, 398
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 51, 106
BstDEI CTNAG 2 cut(s) 15, 354
BstF5I GGATG 2 cut(s) 4, 416
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 53
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 6
BstV2I GAAGAC 3 cut(s) 112, 173, 344
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 4, 416
BtsI GCAGTG 2 cut(s) 258, 336
BtsIMutI CAGTG 4 cut(s) 155, 192, 258, 336
Cac8I GCNNGC 2 cut(s) 51, 106
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 95
CviAII CATG 3 cut(s) 50, 131, 223
CviJI RGCY 9 cut(s) 19, 80, 104, 108, 128, 229, 324, 439, 454
CviKI_1 RGCY 9 cut(s) 19, 80, 104, 108, 128, 229, 324, 439, 454
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 2 cut(s) 15, 354
DrdI GACNNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 272, 398
EarI CTCTTC 2 cut(s) 272, 398
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 53, 134, 226
FaiI YATR 8 cut(s) 51, 101, 132, 215, 224, 347, 362, 472
FaqI GGGAC 2 cut(s) 119, 302
FatI CATG 3 cut(s) 49, 130, 222
FauI CCCGC 2 cut(s) 63, 145
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 2 cut(s) 326, 417
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 8
HhaI GCGC 1 cut(s) 55
Hin1II CATG 3 cut(s) 53, 134, 226
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 4 cut(s) 31, 202, 233, 356
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 228, 388
Hpy188III TCNNGA 2 cut(s) 315, 398
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 4, 44, 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 15, 354
Hsp92II CATG 3 cut(s) 53, 134, 226
HspAI GCGC 1 cut(s) 53
LmnI GCTCC 4 cut(s) 67, 145, 226, 422
LpnPI CCDG 8 cut(s) 11, 21, 90, 156, 193, 198, 252, 377
Lsp1109I GCAGC 1 cut(s) 6
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 326, 417
MaeIII GTNAC 2 cut(s) 187, 376
MbiI CCGCTC 2 cut(s) 70, 140
MboII GAAGA 6 cut(s) 112, 173, 289, 349, 415, 471
MhlI GDGCHC 1 cut(s) 231
MlyI GAGTC 2 cut(s) 196, 365
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 9 cut(s) 24, 159, 192, 264, 267, 277, 399, 413, 439
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 355
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 3 cut(s) 53, 134, 226
NlaIV GGNNCC 2 cut(s) 12, 396
NmuCI GTSAC 2 cut(s) 187, 376
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 53
PaeI GCATGC 1 cut(s) 53
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 31, 233
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 2 cut(s) 196, 364
PpsI GAGTC 2 cut(s) 196, 364
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 12, 396
PspPI GGNCC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 1 cut(s) 20
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 2 cut(s) 196, 365
SduI GDGCHC 1 cut(s) 231
SetI ASST 9 cut(s) 21, 100, 130, 168, 212, 231, 241, 396, 450
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 10
SphI GCATGC 1 cut(s) 53
SsiI CCGC 3 cut(s) 47, 70, 138
SspMI CTAG 2 cut(s) 326, 417
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 174, 231
TfiI GAWTC 2 cut(s) 31, 233
TscAI CASTG 4 cut(s) 162, 192, 258, 336
TseFI GTSAC 2 cut(s) 187, 376
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 2 cut(s) 187, 376
TspDTI ATGAA 2 cut(s) 102, 362
TspRI CASTG 4 cut(s) 162, 192, 258, 336
VpaK11BI GGWCC 1 cut(s) 10
XceI RCATGY 1 cut(s) 53
XspI CTAG 2 cut(s) 326, 417
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.