RLG00000023615

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000336
Physical Location & Seq
Reverse (-)
26036550 .. 26039587
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023615

Sequence Viewer

Length: 348 bp
ATGAACTTTGGTGGATGCATGTTGAAAGGGTCCTTACCTGTAGCTGATGCTGCATATGAATTCTCTATTGCATTGCTTGTGCTACTTATGGACCAGTGTTTCACAAATGGGGAAGCAATGATATTACTGCATCCGTCTTTGCTTGCACAGAATTTGGTGCATGCTTTCACCACTGCTTCCTGGCTACTGGATTATGATGTGGTTGCCAGTAAACAAATTGGTCCTGATAGTAGCAGTGAGGCTACACCTGTGGTGGAGAGCCCTGTGGTGAGGGTGGAGTCCAGTGGTGGTGATGGCAGTAATGAATTGTCTTCTGGAGATGTGTTGTTCGATCAGAGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.08

Weight (kDa)

4.05

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 59, 151
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 59, 151
AspS9I GGNCC 3 cut(s) 30, 91, 221
AsuHPI GGTGA 3 cut(s) 160, 280, 302
AvaII GGWCC 3 cut(s) 30, 91, 221
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 181
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 3 cut(s) 30, 91, 221
BmgT120I GGNCC 3 cut(s) 30, 91, 221
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 3 cut(s) 5, 37, 139
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 336
Bse1I ACTGG 4 cut(s) 94, 192, 207, 282
Bse3DI GCAATG 2 cut(s) 71, 123
BseBI CCWGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 20, 130
BseMI GCAATG 2 cut(s) 71, 123
BseNI ACTGG 4 cut(s) 94, 192, 207, 282
BseXI GCAGC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 31
BsrDI GCAATG 2 cut(s) 71, 123
BsrI ACTGG 4 cut(s) 94, 192, 207, 282
BssMI GATC 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 144, 162
BstF5I GGATG 2 cut(s) 20, 130
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 2 cut(s) 22, 164
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 20, 130
BtsI GCAGTG 2 cut(s) 171, 241
BtsIMutI CAGTG 4 cut(s) 101, 171, 241, 289
Cac8I GCNNGC 2 cut(s) 144, 162
Cfr13I GGNCC 3 cut(s) 30, 91, 221
CviAII CATG 2 cut(s) 19, 161
CviJI RGCY 4 cut(s) 44, 184, 242, 261
CviKI_1 RGCY 4 cut(s) 44, 184, 242, 261
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 3 cut(s) 30, 91, 221
EcoO109I RGGNCCY 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 2 cut(s) 22, 164
FaiI YATR 8 cut(s) 20, 55, 57, 89, 162, 195, 341, 346
FatI CATG 2 cut(s) 18, 160
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 27, 117
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 336
Hin1II CATG 2 cut(s) 22, 164
HinfI GANTC 1 cut(s) 278
HphI GGTGA 3 cut(s) 160, 280, 302
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 2 cut(s) 224, 315
Hpy8I GTNNAC 1 cut(s) 212
HpyCH4V TGCA 6 cut(s) 18, 53, 71, 130, 146, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 22, 164
Kzo9I GATC 1 cut(s) 331
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 3 cut(s) 5, 37, 139
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 4 cut(s) 59, 151, 216, 305
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 2 cut(s) 232, 264
Mph1103I ATGCAT 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeI CATATG 1 cut(s) 55
NdeII GATC 1 cut(s) 331
NlaIII CATG 2 cut(s) 22, 164
NlaIV GGNNCC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 20
NspI RCATGY 2 cut(s) 22, 164
PaeI GCATGC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 3 cut(s) 30, 91, 221
PspPPI RGGWCCY 1 cut(s) 30
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 3 cut(s) 30, 91, 221
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 263
SetI ASST 3 cut(s) 40, 46, 250
SfaNI GCATC 3 cut(s) 5, 37, 139
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 3 cut(s) 30, 91, 221
SphI GCATGC 1 cut(s) 164
Sse9I AATT 4 cut(s) 59, 151, 216, 305
StyD4I CCNGG 1 cut(s) 179
TaqI TCGA 1 cut(s) 330
TasI AATT 4 cut(s) 59, 151, 216, 305
TscAI CASTG 4 cut(s) 101, 178, 241, 289
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 17, 72, 318
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 4 cut(s) 101, 178, 241, 289
VpaK11BI GGWCC 3 cut(s) 30, 91, 221
XapI RAATTY 2 cut(s) 59, 151
XceI RCATGY 2 cut(s) 22, 164
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.