Rh3BG267700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000336
Physical Location & Seq
Forward (+)
25990074 .. 25990367
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG267700.1

Sequence Viewer

Length: 294 bp
ATGAGATTGAGCATGGCAGTTGGAAGAACTAATCTGGATGCCATGACAATGGGTTTGTGCAATGTGAAACCGATCAAAGAAGTGTATAAGAAGAGGGGTAGGGCGAAAGGTGCAAAGAACAAGACCAAGGAGCTTAAGGTTGTTCAAGCGTCCCCTATGAAGAAGTCCCTATTAAAGCGGATTAAGACTCCAAGAAAAGAGGAGAAATTGGTGAATAGCTTGCCAGAATTCACCATAGTCGACGTTGTCAATGGTTCTAACCCGTCCAAGAGTAAGGAACCAATAATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.79

Weight (kDa)

10.4

Isoelectric Point (pI)

16.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 227
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 133, 219
AluI AGCT 2 cut(s) 133, 219
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AsuHPI GGTGA 2 cut(s) 223, 223
BfrI CTTAAG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 215
BslFI GGGAC 2 cut(s) 136, 151
BsmFI GGGAC 2 cut(s) 136, 151
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 86
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 221
CseI GACGC 1 cut(s) 138
CviAII CATG 2 cut(s) 13, 43
CviJI RGCY 2 cut(s) 133, 219
CviKI_1 RGCY 2 cut(s) 133, 219
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 16, 46
FaiI YATR 5 cut(s) 14, 44, 87, 158, 236
FaqI GGGAC 2 cut(s) 136, 151
FatI CATG 2 cut(s) 12, 42
FblI GTMKAC 1 cut(s) 240
FokI GGATG 1 cut(s) 50
HgaI GACGC 1 cut(s) 138
Hin1II CATG 2 cut(s) 16, 46
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 187
HphI GGTGA 2 cut(s) 223, 223
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 60, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 2 cut(s) 16, 46
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 2 cut(s) 20, 237
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 243
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 3 cut(s) 36, 103, 172
MluCI AATT 3 cut(s) 206, 227, 285
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 2 cut(s) 87, 193
MseI TTAA 4 cut(s) 135, 173, 183, 292
MslI CAYNNNNRTG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 72
NlaIII CATG 2 cut(s) 16, 46
NlaIV GGNNCC 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 245
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 47
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 4 cut(s) 135, 173, 183, 292
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 181
SetI ASST 5 cut(s) 112, 135, 141, 221, 246
SfaNI GCATC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 206, 227, 285
SsiI CCGC 1 cut(s) 178
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 240
TasI AATT 3 cut(s) 206, 227, 285
Tru1I TTAA 4 cut(s) 135, 173, 183, 292
Tru9I TTAA 4 cut(s) 135, 173, 183, 292
TspDTI ATGAA 1 cut(s) 173
Tth111I GACNNNGTC 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 134
XapI RAATTY 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.