Rmu_sc0011497.1_g000015

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011497.1
OG0000336
Physical Location & Seq
Forward (+)
58743 .. 59456
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011497.1_g000015.1.cds

Sequence Viewer

Length: 714 bp
atgaccgtgcgcctggctgcatccttgggactggcaaatgcgggccggctggtggacctgtggccttcgtgtggtgaaggattatgtcgatctcagacgtaccttgttgggaaacttctgatagccacagcttccaacaagagatcctttatagggatgttccagcgagcatggcggttgaatggccactacactgtgcaggagcatgatgaccgttttctctttaccttgtcggacctaactgatcgtaaccagattctccgaggtggtccgtggagttttgacagagctccggtggttttggcaccatatgatggagttggagcaatcaaagatgtaccgcatactaaactagctttctggatcaagatgcgtgggttaccgccagattttcacatagaccactgtcttagaaggatcggcagtgcaataggttggtatgctcaaaaggacaccacagagtttgatgcaagaagaatccagattcgggttgaattggacttgcagcagcctatcatctttcgtcgtagcttcaccgtagatgatggtattgtggtggatttggagttcttcttcaagaatttgtatggcagatgcagggattgtggacttgtcactcatgttggtttgccatgttctagaactcctctgccaacagagctgcaaactgatactcctttagcacgtcataatcttgggcttgccttgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

237

Amino Acids

26.81

Weight (kDa)

8.98

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 4 cut(s) 41, 175, 341, 383
AclWI GGATC 3 cut(s) 138, 371, 425
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 580
AfaI GTAC 2 cut(s) 101, 339
AfiI CCNNNNNNNGG 5 cut(s) 52, 71, 153, 314, 487
AgsI TTSAA 4 cut(s) 181, 494, 577, 709
AjiI CACGTC 1 cut(s) 686
AjnI CCWGG 1 cut(s) 12
AloI GAACNNNNNNTCC 2 cut(s) 551, 583
AluBI AGCT 5 cut(s) 131, 290, 356, 531, 661
AluI AGCT 5 cut(s) 131, 290, 356, 531, 661
Alw21I GWGCWC 1 cut(s) 292
AlwI GGATC 3 cut(s) 138, 371, 425
AoxI GGCC 3 cut(s) 43, 62, 184
ApeKI GCWGC 4 cut(s) 17, 505, 508, 661
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 4 cut(s) 43, 55, 235, 269
AsuHPI GGTGA 2 cut(s) 86, 526
AvaII GGWCC 3 cut(s) 55, 235, 269
BalI TGGCCA 1 cut(s) 186
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 4, 517, 520, 648
BccI CCATC 2 cut(s) 308, 539
BciT130I CCWGG 1 cut(s) 14
BfaI CTAG 3 cut(s) 353, 639, 712
BisI GCNGC 4 cut(s) 18, 506, 509, 662
BlsI GCNGC 4 cut(s) 19, 507, 510, 663
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 3 cut(s) 55, 235, 269
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 4 cut(s) 43, 55, 235, 269
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 4 cut(s) 29, 360, 457, 584
BoxI GACNNNNGTC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 24, 262, 272
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 658, 688
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 71, 153, 314, 487
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 3 cut(s) 24, 262, 272
BseGI GGATG 2 cut(s) 20, 162
BseLI CCNNNNNNNGG 5 cut(s) 52, 71, 153, 314, 487
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 4 cut(s) 4, 517, 520, 648
BsgI GTGCAG 1 cut(s) 218
BshFI GGCC 3 cut(s) 45, 64, 186
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 46, 293
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 5 cut(s) 52, 71, 153, 314, 487
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 3 cut(s) 45, 64, 186
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 5 cut(s) 89, 143, 244, 363, 417
BspACI CCGC 4 cut(s) 41, 175, 341, 383
BspANI GGCC 3 cut(s) 45, 64, 186
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 3 cut(s) 138, 371, 425
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 3 cut(s) 24, 262, 272
BssMI GATC 5 cut(s) 89, 143, 244, 363, 417
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 5 cut(s) 7, 196, 215, 407, 538
BstC8I GCNNGC 4 cut(s) 43, 47, 168, 702
BstDEI CTNAG 2 cut(s) 93, 410
BstDSI CCRYGG 1 cut(s) 272
BstEII GGTNACC 1 cut(s) 378
BstF5I GGATG 2 cut(s) 20, 162
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 92, 146, 247, 366, 420
BstMBI GATC 5 cut(s) 89, 143, 244, 363, 417
BstMWI GCNNNNNNNGC 2 cut(s) 172, 658
BstNI CCWGG 1 cut(s) 14
BstPAI GACNNNNGTC 1 cut(s) 405
BstPI GGTNACC 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 4 cut(s) 4, 517, 520, 648
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 3 cut(s) 45, 64, 186
BtgI CCRYGG 1 cut(s) 272
BtrI CACGTC 1 cut(s) 686
BtsCI GGATG 2 cut(s) 20, 162
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 3 cut(s) 192, 403, 430
Cac8I GCNNGC 4 cut(s) 43, 47, 168, 702
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 4 cut(s) 43, 55, 235, 269
Csp6I GTAC 2 cut(s) 100, 338
CspCI CAANNNNNGTGG 4 cut(s) 355, 390, 445, 480
CviAII CATG 4 cut(s) 171, 206, 620, 633
CviQI GTAC 2 cut(s) 100, 338
DdeI CTNAG 2 cut(s) 93, 410
DpnI GATC 5 cut(s) 91, 145, 246, 365, 419
DpnII GATC 5 cut(s) 89, 143, 244, 363, 417
EaeI YGGCCR 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 3 cut(s) 55, 235, 269
Eco53kI GAGCTC 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 4 cut(s) 174, 209, 623, 636
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 170, 205, 619, 632
FauI CCCGC 1 cut(s) 34
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 18, 506, 509, 662
FokI GGATG 2 cut(s) 7, 169
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 4 cut(s) 18, 506, 509, 662
FspBI CTAG 3 cut(s) 353, 639, 712
GlaI GCGC 1 cut(s) 11
GluI GCNGC 4 cut(s) 18, 506, 509, 662
HaeIII GGCC 3 cut(s) 45, 64, 186
HapII CCGG 2 cut(s) 46, 293
HhaI GCGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 174, 209, 623, 636
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 3 cut(s) 256, 477, 484
HpaII CCGG 2 cut(s) 46, 293
HphI GGTGA 2 cut(s) 86, 526
Hpy166II GTNNAC 2 cut(s) 55, 608
Hpy188I TCNGA 4 cut(s) 96, 120, 235, 263
Hpy188III TCNNGA 5 cut(s) 361, 367, 481, 577, 639
Hpy8I GTNNAC 2 cut(s) 55, 608
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 3 cut(s) 71, 75, 408
HpyCH4III ACNGT 5 cut(s) 7, 196, 215, 407, 538
HpyCH4IV ACGT 2 cut(s) 98, 685
HpyCH4V TGCA 7 cut(s) 20, 199, 428, 470, 505, 597, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 658
HpyF3I CTNAG 2 cut(s) 93, 410
HpySE526I ACGT 2 cut(s) 98, 685
Hsp92II CATG 4 cut(s) 174, 209, 623, 636
HspAI GCGC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 45
KroNI GCCGGC 1 cut(s) 47
Kzo9I GATC 5 cut(s) 89, 143, 244, 363, 417
LmnI GCTCC 3 cut(s) 202, 295, 323
Lsp1109I GCAGC 4 cut(s) 4, 517, 520, 648
LweI GCATC 4 cut(s) 29, 360, 457, 584
MaeI CTAG 3 cut(s) 353, 639, 712
MaeII ACGT 2 cut(s) 98, 685
MaeIII GTNAC 3 cut(s) 248, 378, 613
MalI GATC 5 cut(s) 91, 145, 246, 365, 419
MboI GATC 5 cut(s) 89, 143, 244, 363, 417
MboII GAAGA 3 cut(s) 486, 562, 565
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 2 cut(s) 494, 580
MluNI TGGCCA 1 cut(s) 186
MmeI TCCRAC 3 cut(s) 159, 213, 301
MnlI CCTC 2 cut(s) 257, 657
Mox20I TGGCCA 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 45
MscI TGGCCA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 2 cut(s) 46, 293
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 172, 658
NaeI GCCGGC 1 cut(s) 47
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 89, 143, 244, 363, 417
NgoMIV GCCGGC 1 cut(s) 45
NlaIII CATG 4 cut(s) 174, 209, 623, 636
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 613
PdiI GCCGGC 1 cut(s) 47
PfeI GAWTC 3 cut(s) 256, 477, 484
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 4 cut(s) 19, 507, 510, 663
PshAI GACNNNNGTC 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 4 cut(s) 43, 55, 235, 269
PsuI RGATCY 1 cut(s) 143
RsaI GTAC 2 cut(s) 101, 339
RsaNI GTAC 2 cut(s) 100, 338
SacI GAGCTC 1 cut(s) 292
SatI GCNGC 4 cut(s) 18, 506, 509, 662
Sau3AI GATC 5 cut(s) 89, 143, 244, 363, 417
Sau96I GGNCC 4 cut(s) 43, 55, 235, 269
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 4 cut(s) 29, 360, 457, 584
SinI GGWCC 3 cut(s) 55, 235, 269
Sse9I AATT 2 cut(s) 494, 580
SsiI CCGC 4 cut(s) 41, 175, 341, 383
SspMI CTAG 3 cut(s) 353, 639, 712
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 5 cut(s) 7, 196, 215, 407, 538
TaiI ACGT 2 cut(s) 101, 688
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 494, 580
TfiI GAWTC 3 cut(s) 256, 477, 484
TscAI CASTG 3 cut(s) 199, 410, 430
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 4 cut(s) 17, 505, 508, 661
Tsp45I GTSAC 1 cut(s) 613
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 199, 410, 430
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 3 cut(s) 55, 235, 269
XapI RAATTY 1 cut(s) 580
XbaI TCTAGA 1 cut(s) 638
XspI CTAG 3 cut(s) 353, 639, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.