No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 8 - 224 | 2.8e-09 | Endonuclease/Exonuclease/phosphatase family |
| RVT_1 | PF00078 | 477 - 737 | 4.1e-24 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| zf-RVT | PF13966 | 995 - 1088 | 4e-12 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1170 - 1261 | 3.2e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2535 |
| Acc36I | ACCTGC | 2 cut(s) | 255, 3153 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3426 |
| AccI | GTMKAC | 2 cut(s) | 243, 2932 |
| AciI | CCGC | 2 cut(s) | 1925, 2125 |
| AclWI | GGATC | 6 cut(s) | 375, 597, 1082, 1856, 3053, 3655 |
| AcoI | YGGCCR | 2 cut(s) | 417, 1709 |
| AcsI | RAATTY | 6 cut(s) | 806, 1074, 2298, 3117, 3315, 3675 |
| AcuI | CTGAAG | 4 cut(s) | 1164, 1770, 1973, 3448 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 388, 1018, 1029, 1843, 1844, 2673, 3426 |
| AflII | CTTAAG | 1 cut(s) | 3703 |
| AflIII | ACRYGT | 3 cut(s) | 703, 3019, 3440 |
| AgeI | ACCGGT | 1 cut(s) | 3053 |
| AjiI | CACGTC | 1 cut(s) | 719 |
| AjnI | CCWGG | 6 cut(s) | 99, 471, 611, 1288, 1576, 3537 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 569, 601, 3009, 3041 |
| Alw21I | GWGCWC | 1 cut(s) | 3097 |
| Alw26I | GTCTC | 6 cut(s) | 1099, 1311, 2045, 2560, 3346, 3605 |
| AlwI | GGATC | 6 cut(s) | 375, 597, 1082, 1856, 3053, 3655 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1951, 2027, 3452 |
| Ama87I | CYCGRG | 1 cut(s) | 1842 |
| ApoI | RAATTY | 6 cut(s) | 806, 1074, 2298, 3117, 3315, 3675 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3351, 3383 |
| AsiGI | ACCGGT | 1 cut(s) | 3053 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1501, 3021, 3489 |
| AspLEI | GCGC | 1 cut(s) | 732 |
| AspS9I | GGNCC | 7 cut(s) | 208, 464, 1292, 2206, 3132, 3397, 3821 |
| AsuC2I | CCSGG | 2 cut(s) | 9, 421 |
| AsuHPI | GGTGA | 8 cut(s) | 1780, 1826, 1973, 2447, 2882, 3068, 3206, 3823 |
| AsuII | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| AvaI | CYCGRG | 1 cut(s) | 1842 |
| AvaII | GGWCC | 2 cut(s) | 464, 1292 |
| AxyI | CCTNAGG | 1 cut(s) | 1965 |
| BaeGI | GKGCMC | 1 cut(s) | 3437 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 760, 793, 3517, 3550 |
| BanII | GRGCYC | 1 cut(s) | 3097 |
| BauI | CACGAG | 2 cut(s) | 444, 772 |
| BbsI | GAAGAC | 2 cut(s) | 3231, 3693 |
| Bbv12I | GWGCWC | 1 cut(s) | 3097 |
| BbvCI | CCTCAGC | 1 cut(s) | 2915 |
| BceAI | ACGGC | 1 cut(s) | 1696 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 35 |
| BciT130I | CCWGG | 6 cut(s) | 101, 473, 613, 1290, 1578, 3539 |
| BclI | TGATCA | 2 cut(s) | 2761, 3211 |
| BcnI | CCSGG | 2 cut(s) | 9, 421 |
| BcoDI | GTCTC | 6 cut(s) | 1099, 1311, 2045, 2560, 3346, 3605 |
| BfaI | CTAG | 5 cut(s) | 122, 383, 2927, 3012, 3522 |
| BfmI | CTRYAG | 4 cut(s) | 31, 788, 1492, 2028 |
| BfoI | RGCGCY | 1 cut(s) | 733 |
| BfrI | CTTAAG | 1 cut(s) | 3703 |
| BfuAI | ACCTGC | 2 cut(s) | 255, 3153 |
| BglII | AGATCT | 2 cut(s) | 306, 2647 |
| BmcAI | AGTACT | 2 cut(s) | 2618, 3469 |
| Bme1390I | CCNGG | 8 cut(s) | 9, 101, 421, 473, 613, 1290, 1578, 3539 |
| Bme18I | GGWCC | 2 cut(s) | 464, 1292 |
| BmeT110I | CYCGRG | 1 cut(s) | 1842 |
| BmgBI | CACGTC | 1 cut(s) | 719 |
| BmgT120I | GGNCC | 7 cut(s) | 208, 464, 1292, 2206, 3132, 3397, 3821 |
| BmiI | GGNNCC | 5 cut(s) | 1538, 1971, 2772, 3398, 3822 |
| BmrFI | CCNGG | 8 cut(s) | 9, 101, 421, 473, 613, 1290, 1578, 3539 |
| BmrI | ACTGGG | 1 cut(s) | 3817 |
| BmuI | ACTGGG | 1 cut(s) | 3817 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3712 |
| BpiI | GAAGAC | 2 cut(s) | 3231, 3693 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1849, 1881, 3150, 3182 |
| BpmI | CTGGAG | 3 cut(s) | 331, 973, 1956 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2915, 3096 |
| Bpu14I | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| BpuEI | CTTGAG | 3 cut(s) | 845, 1625, 1655 |
| BpuMI | CCSGG | 2 cut(s) | 9, 421 |
| Bsa29I | ATCGAT | 1 cut(s) | 2197 |
| BsaAI | YACGTR | 1 cut(s) | 3443 |
| BsaBI | GATNNNNATC | 2 cut(s) | 990, 3389 |
| BsaJI | CCNNGG | 6 cut(s) | 420, 471, 881, 1506, 3363, 3537 |
| BsaWI | WCCGGW | 3 cut(s) | 1294, 3053, 3563 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2724, 2754, 3288, 3318 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 388, 1018, 1029, 1843, 1844, 2673, 3426 |
| Bse118I | RCCGGY | 1 cut(s) | 3053 |
| Bse1I | ACTGG | 6 cut(s) | 304, 325, 956, 2699, 3573, 3812 |
| Bse21I | CCTNAGG | 1 cut(s) | 1965 |
| Bse3DI | GCAATG | 4 cut(s) | 19, 1512, 2134, 3037 |
| Bse8I | GATNNNNATC | 2 cut(s) | 990, 3389 |
| BseBI | CCWGG | 6 cut(s) | 101, 473, 613, 1290, 1578, 3539 |
| BseCI | ATCGAT | 1 cut(s) | 2197 |
| BseDI | CCNNGG | 6 cut(s) | 420, 471, 881, 1506, 3363, 3537 |
| BseGI | GGATG | 8 cut(s) | 551, 1159, 1277, 1303, 1848, 2793, 3339, 3690 |
| BseJI | GATNNNNATC | 2 cut(s) | 990, 3389 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 388, 1018, 1029, 1843, 1844, 2673, 3426 |
| BseMI | GCAATG | 4 cut(s) | 19, 1512, 2134, 3037 |
| BseMII | CTCAG | 7 cut(s) | 506, 1979, 2159, 2252, 2929, 3110, 3612 |
| BseNI | ACTGG | 6 cut(s) | 304, 325, 956, 2699, 3573, 3812 |
| BseRI | GAGGAG | 2 cut(s) | 1545, 2048 |
| BseSI | GKGCMC | 1 cut(s) | 3437 |
| BsgI | GTGCAG | 2 cut(s) | 1914, 2040 |
| BshTI | ACCGGT | 1 cut(s) | 3053 |
| BshVI | ATCGAT | 1 cut(s) | 2197 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3097 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1842 |
| BsiSI | CCGG | 5 cut(s) | 8, 420, 1295, 3054, 3564 |
| BslFI | GGGAC | 3 cut(s) | 2117, 3237, 3259 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 388, 1018, 1029, 1843, 1844, 2673, 3426 |
| BsmAI | GTCTC | 6 cut(s) | 1099, 1311, 2045, 2560, 3346, 3605 |
| BsmFI | GGGAC | 3 cut(s) | 2117, 3237, 3259 |
| BsmI | GAATGC | 3 cut(s) | 752, 909, 2919 |
| BsoBI | CYCGRG | 1 cut(s) | 1842 |
| Bsp119I | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| Bsp1286I | GDGCHC | 2 cut(s) | 3097, 3437 |
| Bsp1407I | TGTACA | 3 cut(s) | 706, 3631, 3844 |
| Bsp19I | CCATGG | 1 cut(s) | 881 |
| BspACI | CCGC | 2 cut(s) | 1925, 2125 |
| BspCNI | CTCAG | 7 cut(s) | 505, 1978, 2158, 2251, 2928, 3109, 3611 |
| BspDI | ATCGAT | 1 cut(s) | 2197 |
| BspHI | TCATGA | 3 cut(s) | 229, 760, 1093 |
| BspLI | GGNNCC | 5 cut(s) | 1538, 1971, 2772, 3398, 3822 |
| BspMAI | CTGCAG | 2 cut(s) | 35, 792 |
| BspMI | ACCTGC | 2 cut(s) | 255, 3153 |
| BspPI | GGATC | 6 cut(s) | 375, 597, 1082, 1856, 3053, 3655 |
| BspT104I | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| BspTI | CTTAAG | 1 cut(s) | 3703 |
| BsrDI | GCAATG | 4 cut(s) | 19, 1512, 2134, 3037 |
| BsrFI | RCCGGY | 1 cut(s) | 3053 |
| BsrGI | TGTACA | 3 cut(s) | 706, 3631, 3844 |
| BsrI | ACTGG | 6 cut(s) | 304, 325, 956, 2699, 3573, 3812 |
| BssAI | RCCGGY | 1 cut(s) | 3053 |
| BssECI | CCNNGG | 6 cut(s) | 420, 471, 881, 1506, 3363, 3537 |
| BssSI | CACGAG | 2 cut(s) | 444, 772 |
| BssT1I | CCWWGG | 2 cut(s) | 881, 1506 |
| Bst2BI | CACGAG | 2 cut(s) | 444, 772 |
| Bst2UI | CCWGG | 6 cut(s) | 101, 473, 613, 1290, 1578, 3539 |
| Bst4CI | ACNGT | 7 cut(s) | 408, 930, 2029, 2350, 2859, 2989, 3075 |
| Bst6I | CTCTTC | 4 cut(s) | 1028, 1563, 1886, 3480 |
| BstAFI | CTTAAG | 1 cut(s) | 3703 |
| BstAUI | TGTACA | 3 cut(s) | 706, 3631, 3844 |
| BstBAI | YACGTR | 1 cut(s) | 3443 |
| BstBI | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| BstC8I | GCNNGC | 5 cut(s) | 728, 798, 2314, 2643, 3136 |
| BstDEI | CTNAG | 8 cut(s) | 492, 1965, 2145, 2238, 2303, 2915, 3096, 3598 |
| BstDSI | CCRYGG | 1 cut(s) | 881 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1027 |
| BstF5I | GGATG | 8 cut(s) | 551, 1159, 1277, 1303, 1848, 2793, 3339, 3690 |
| BstH2I | RGCGCY | 1 cut(s) | 733 |
| BstHHI | GCGC | 1 cut(s) | 732 |
| BstMAI | GTCTC | 6 cut(s) | 1099, 1311, 2045, 2560, 3346, 3605 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 488, 916, 1616, 2313, 2549, 2959, 3385, 3586, 3779 |
| BstNI | CCWGG | 6 cut(s) | 101, 473, 613, 1290, 1578, 3539 |
| BstNSI | RCATGY | 5 cut(s) | 707, 800, 1306, 3023, 3750 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3712 |
| BstSCI | CCNGG | 8 cut(s) | 7, 99, 419, 471, 611, 1288, 1576, 3537 |
| BstSFI | CTRYAG | 4 cut(s) | 31, 788, 1492, 2028 |
| BstSLI | GKGCMC | 1 cut(s) | 3437 |
| BstV2I | GAAGAC | 2 cut(s) | 3231, 3693 |
| BstX2I | RGATCY | 3 cut(s) | 306, 367, 2647 |
| BstYI | RGATCY | 3 cut(s) | 306, 367, 2647 |
| Bsu15I | ATCGAT | 1 cut(s) | 2197 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1965 |
| BsuTUI | ATCGAT | 1 cut(s) | 2197 |
| BtgI | CCRYGG | 1 cut(s) | 881 |
| BtrI | CACGTC | 1 cut(s) | 719 |
| BtsCI | GGATG | 8 cut(s) | 551, 1159, 1277, 1303, 1848, 2793, 3339, 3690 |
| BtsI | GCAGTG | 2 cut(s) | 797, 2343 |
| BtsIMutI | CAGTG | 5 cut(s) | 797, 2343, 2771, 2864, 3507 |
| BveI | ACCTGC | 2 cut(s) | 255, 3153 |
| Cac8I | GCNNGC | 5 cut(s) | 728, 798, 2314, 2643, 3136 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1951, 2027, 3452 |
| CciI | TCATGA | 3 cut(s) | 229, 760, 1093 |
| CfoI | GCGC | 1 cut(s) | 732 |
| Cfr10I | RCCGGY | 1 cut(s) | 3053 |
| Cfr13I | GGNCC | 7 cut(s) | 208, 464, 1292, 2206, 3132, 3397, 3821 |
| ClaI | ATCGAT | 1 cut(s) | 2197 |
| CseI | GACGC | 1 cut(s) | 80 |
| CsiI | ACCWGGT | 1 cut(s) | 99 |
| CspAI | ACCGGT | 1 cut(s) | 3053 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 442, 477 |
| DdeI | CTNAG | 8 cut(s) | 492, 1965, 2145, 2238, 2303, 2915, 3096, 3598 |
| DraI | TTTAAA | 1 cut(s) | 2518 |
| EaeI | YGGCCR | 2 cut(s) | 417, 1709 |
| Eam1104I | CTCTTC | 4 cut(s) | 1028, 1563, 1886, 3480 |
| EarI | CTCTTC | 4 cut(s) | 1028, 1563, 1886, 3480 |
| Ecl136II | GAGCTC | 1 cut(s) | 3095 |
| Eco130I | CCWWGG | 2 cut(s) | 881, 1506 |
| Eco147I | AGGCCT | 1 cut(s) | 1022 |
| Eco24I | GRGCYC | 1 cut(s) | 3097 |
| Eco47I | GGWCC | 2 cut(s) | 464, 1292 |
| Eco53kI | GAGCTC | 1 cut(s) | 3095 |
| Eco57I | CTGAAG | 4 cut(s) | 1164, 1770, 1973, 3448 |
| Eco81I | CCTNAGG | 1 cut(s) | 1965 |
| Eco88I | CYCGRG | 1 cut(s) | 1842 |
| EcoICRI | GAGCTC | 1 cut(s) | 3095 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1027 |
| EcoO109I | RGGNCCY | 4 cut(s) | 208, 3132, 3397, 3821 |
| EcoRII | CCWGG | 6 cut(s) | 99, 471, 611, 1288, 1576, 3537 |
| EcoT14I | CCWWGG | 2 cut(s) | 881, 1506 |
| EcoT22I | ATGCAT | 1 cut(s) | 1635 |
| EcoT38I | GRGCYC | 1 cut(s) | 3097 |
| ErhI | CCWWGG | 2 cut(s) | 881, 1506 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1094, 1126, 1675, 1707 |
| FaqI | GGGAC | 3 cut(s) | 2117, 3237, 3259 |
| FauNDI | CATATG | 1 cut(s) | 1418 |
| FbaI | TGATCA | 2 cut(s) | 2761, 3211 |
| FblI | GTMKAC | 2 cut(s) | 243, 2932 |
| FokI | GGATG | 8 cut(s) | 558, 1166, 1264, 1310, 1835, 2780, 3346, 3677 |
| FriOI | GRGCYC | 1 cut(s) | 3097 |
| FspBI | CTAG | 5 cut(s) | 122, 383, 2927, 3012, 3522 |
| GlaI | GCGC | 1 cut(s) | 731 |
| GsuI | CTGGAG | 3 cut(s) | 331, 973, 1956 |
| HaeII | RGCGCY | 1 cut(s) | 733 |
| HapII | CCGG | 5 cut(s) | 8, 420, 1295, 3054, 3564 |
| HgaI | GACGC | 1 cut(s) | 80 |
| HhaI | GCGC | 1 cut(s) | 732 |
| Hin6I | GCGC | 1 cut(s) | 730 |
| HinP1I | GCGC | 1 cut(s) | 730 |
| HincII | GTYRAC | 4 cut(s) | 779, 926, 2095, 2933 |
| HindII | GTYRAC | 4 cut(s) | 779, 926, 2095, 2933 |
| HindIII | AAGCTT | 4 cut(s) | 821, 1736, 2276, 2411 |
| HpaI | GTTAAC | 1 cut(s) | 2095 |
| HpaII | CCGG | 5 cut(s) | 8, 420, 1295, 3054, 3564 |
| HphI | GGTGA | 8 cut(s) | 1780, 1826, 1973, 2447, 2882, 3068, 3206, 3823 |
| Hpy99I | CGWCG | 1 cut(s) | 720 |
| HpyCH4III | ACNGT | 7 cut(s) | 408, 930, 2029, 2350, 2859, 2989, 3075 |
| HpyCH4IV | ACGT | 3 cut(s) | 718, 3442, 3709 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 488, 916, 1616, 2313, 2549, 2959, 3385, 3586, 3779 |
| HpyF3I | CTNAG | 8 cut(s) | 492, 1965, 2145, 2238, 2303, 2915, 3096, 3598 |
| HpySE526I | ACGT | 3 cut(s) | 718, 3442, 3709 |
| HspAI | GCGC | 1 cut(s) | 730 |
| Ksp22I | TGATCA | 2 cut(s) | 2761, 3211 |
| KspAI | GTTAAC | 1 cut(s) | 2095 |
| LmnI | GCTCC | 9 cut(s) | 487, 1378, 1542, 1937, 1975, 2188, 3286, 3742, 3853 |
| MabI | ACCWGGT | 1 cut(s) | 99 |
| MaeI | CTAG | 5 cut(s) | 122, 383, 2927, 3012, 3522 |
| MaeII | ACGT | 3 cut(s) | 718, 3442, 3709 |
| MaeIII | GTNAC | 7 cut(s) | 1198, 1780, 2372, 2435, 2572, 3714, 3800 |
| MflI | RGATCY | 3 cut(s) | 306, 367, 2647 |
| MhlI | GDGCHC | 2 cut(s) | 3097, 3437 |
| MmeI | TCCRAC | 3 cut(s) | 1428, 1876, 3462 |
| Mph1103I | ATGCAT | 1 cut(s) | 1635 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1501, 3021, 3489 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 2 cut(s) | 3452, 3653 |
| MspCI | CTTAAG | 1 cut(s) | 3703 |
| MspI | CCGG | 5 cut(s) | 8, 420, 1295, 3054, 3564 |
| MspR9I | CCNGG | 8 cut(s) | 9, 101, 421, 473, 613, 1290, 1578, 3539 |
| Mva1269I | GAATGC | 3 cut(s) | 752, 909, 2919 |
| MvaI | CCWGG | 6 cut(s) | 101, 473, 613, 1290, 1578, 3539 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 488, 916, 1616, 2313, 2549, 2959, 3385, 3586, 3779 |
| NciI | CCSGG | 2 cut(s) | 9, 421 |
| NcoI | CCATGG | 1 cut(s) | 881 |
| NdeI | CATATG | 1 cut(s) | 1418 |
| NlaIV | GGNNCC | 5 cut(s) | 1538, 1971, 2772, 3398, 3822 |
| NmeAIII | GCCGAG | 2 cut(s) | 980, 3388 |
| NmuCI | GTSAC | 3 cut(s) | 1780, 2435, 3714 |
| NsiI | ATGCAT | 1 cut(s) | 1635 |
| NspI | RCATGY | 5 cut(s) | 707, 800, 1306, 3023, 3750 |
| NspV | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| PaeI | GCATGC | 1 cut(s) | 800 |
| PagI | TCATGA | 3 cut(s) | 229, 760, 1093 |
| PceI | AGGCCT | 1 cut(s) | 1022 |
| PciI | ACATGT | 2 cut(s) | 703, 3019 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1849 |
| PctI | GAATGC | 3 cut(s) | 752, 909, 2919 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1501, 3021, 3489 |
| PfeI | GAWTC | 9 cut(s) | 4, 200, 712, 1157, 1400, 1497, 2863, 3788, 3814 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3426 |
| PfoI | TCCNGGA | 1 cut(s) | 1288 |
| PinAI | ACCGGT | 1 cut(s) | 3053 |
| Ppu21I | YACGTR | 1 cut(s) | 3443 |
| PscI | ACATGT | 2 cut(s) | 703, 3019 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3712 |
| PsiI | TTATAA | 1 cut(s) | 2535 |
| Psp124BI | GAGCTC | 1 cut(s) | 3097 |
| Psp6I | CCWGG | 6 cut(s) | 99, 471, 611, 1288, 1576, 3537 |
| PspGI | CCWGG | 6 cut(s) | 99, 471, 611, 1288, 1576, 3537 |
| PspN4I | GGNNCC | 5 cut(s) | 1538, 1971, 2772, 3398, 3822 |
| PspPI | GGNCC | 7 cut(s) | 208, 464, 1292, 2206, 3132, 3397, 3821 |
| PstI | CTGCAG | 2 cut(s) | 35, 792 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1951, 2027, 3452 |
| PsuI | RGATCY | 3 cut(s) | 306, 367, 2647 |
| PvuII | CAGCTG | 2 cut(s) | 3452, 3653 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SacI | GAGCTC | 1 cut(s) | 3097 |
| SalI | GTCGAC | 1 cut(s) | 2931 |
| Sau96I | GGNCC | 7 cut(s) | 208, 464, 1292, 2206, 3132, 3397, 3821 |
| ScaI | AGTACT | 2 cut(s) | 2618, 3469 |
| ScrFI | CCNGG | 8 cut(s) | 9, 101, 421, 473, 613, 1290, 1578, 3539 |
| SduI | GDGCHC | 2 cut(s) | 3097, 3437 |
| SexAI | ACCWGGT | 1 cut(s) | 99 |
| SfcI | CTRYAG | 4 cut(s) | 31, 788, 1492, 2028 |
| SfuI | TTCGAA | 3 cut(s) | 499, 1238, 2749 |
| SgrAI | CRCCGGYG | 1 cut(s) | 3053 |
| SinI | GGWCC | 2 cut(s) | 464, 1292 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 4 cut(s) | 824, 1640, 1670, 3703 |
| SmoI | CTYRAG | 4 cut(s) | 824, 1640, 1670, 3703 |
| SphI | GCATGC | 1 cut(s) | 800 |
| SseBI | AGGCCT | 1 cut(s) | 1022 |
| SsiI | CCGC | 2 cut(s) | 1925, 2125 |
| SspI | AATATT | 6 cut(s) | 178, 1328, 2056, 2524, 2746, 2957 |
| SspMI | CTAG | 5 cut(s) | 122, 383, 2927, 3012, 3522 |
| SstI | GAGCTC | 1 cut(s) | 3097 |
| StuI | AGGCCT | 1 cut(s) | 1022 |
| StyD4I | CCNGG | 8 cut(s) | 7, 99, 419, 471, 611, 1288, 1576, 3537 |
| StyI | CCWWGG | 2 cut(s) | 881, 1506 |
| TaaI | ACNGT | 7 cut(s) | 408, 930, 2029, 2350, 2859, 2989, 3075 |
| TaiI | ACGT | 3 cut(s) | 721, 3445, 3712 |
| TatI | WGTACW | 5 cut(s) | 706, 2616, 3467, 3631, 3844 |
| TauI | GCSGC | 1 cut(s) | 2127 |
| TfiI | GAWTC | 9 cut(s) | 4, 200, 712, 1157, 1400, 1497, 2863, 3788, 3814 |
| TscAI | CASTG | 5 cut(s) | 797, 2343, 2771, 2864, 3514 |
| TseFI | GTSAC | 3 cut(s) | 1780, 2435, 3714 |
| Tsp45I | GTSAC | 3 cut(s) | 1780, 2435, 3714 |
| TspGWI | ACGGA | 1 cut(s) | 666 |
| TspRI | CASTG | 5 cut(s) | 797, 2343, 2771, 2864, 3514 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3426 |
| Vha464I | CTTAAG | 1 cut(s) | 3703 |
| VpaK11BI | GGWCC | 2 cut(s) | 464, 1292 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1027 |
| XapI | RAATTY | 6 cut(s) | 806, 1074, 2298, 3117, 3315, 3675 |
| XceI | RCATGY | 5 cut(s) | 707, 800, 1306, 3023, 3750 |
| XmiI | GTMKAC | 2 cut(s) | 243, 2932 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1501, 3021, 3489 |
| XspI | CTAG | 5 cut(s) | 122, 383, 2927, 3012, 3522 |
| ZrmI | AGTACT | 2 cut(s) | 2618, 3469 |
| Zsp2I | ATGCAT | 1 cut(s) | 1635 |