Rh7DG265900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000336
Physical Location & Seq
Forward (+)
28292272 .. 28292472
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG265900.1

Sequence Viewer

Length: 201 bp
ATGCACTCCCTCGAGTACCTGGCGGGGATCATTTGCTCAGTGATGTTGCGGAGGTTAGTCACCGCTTTGGAGTGGGATGAGATCGAGTTTCCGGAGGCTACTGGTGGACCTATAGCTCGAGGTGTTCGACGAATCGCTGCGGCGGAGGAGGACTTGGAGCGGAACCGCCGTCATCGTCGACGGAGAAATCATCGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.76

Weight (kDa)

10.4

Isoelectric Point (pI)

97.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 178
AccIII TCCGGA 1 cut(s) 91
AciI CCGC 7 cut(s) 23, 49, 63, 140, 143, 160, 166
AclWI GGATC 1 cut(s) 35
AfaI GTAC 1 cut(s) 17
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AlwI GGATC 1 cut(s) 35
Ama87I CYCGRG 2 cut(s) 11, 117
Aor13HI TCCGGA 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 11, 117
AvaII GGWCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 2 cut(s) 138, 141
BlsI GCNGC 2 cut(s) 139, 142
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 2 cut(s) 11, 117
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 91
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 124
BsiHKCI CYCGRG 2 cut(s) 11, 117
BsiSI CCGG 1 cut(s) 92
BsoBI CYCGRG 2 cut(s) 11, 117
Bsp13I TCCGGA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 27, 81
BspACI CCGC 7 cut(s) 23, 49, 63, 140, 143, 160, 166
BspCNI CTCAG 1 cut(s) 50
BspEI TCCGGA 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 106
BssMI GATC 2 cut(s) 27, 81
Bst2UI CCWGG 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 2 cut(s) 30, 84
BstMBI GATC 2 cut(s) 27, 81
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 16
CviJI RGCY 2 cut(s) 98, 116
CviKI_1 RGCY 2 cut(s) 98, 116
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 37
DpnI GATC 2 cut(s) 29, 83
DpnII GATC 2 cut(s) 27, 81
EciI GGCGGA 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 107
Eco88I CYCGRG 2 cut(s) 11, 117
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 1 cut(s) 113
FauI CCCGC 1 cut(s) 16
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 138, 141
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 138, 141
GluI GCNGC 2 cut(s) 138, 141
HapII CCGG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 1 cut(s) 132
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 107, 179
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 107, 179
Hpy99I CGWCG 3 cut(s) 132, 180, 183
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 27, 81
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 5, 32, 87, 105
Lsp1109I GCAGC 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 29, 83
MbiI CCGCTC 1 cut(s) 160
MboI GATC 2 cut(s) 27, 81
MnlI CCTC 6 cut(s) 20, 45, 88, 113, 139, 142
MroI TCCGGA 1 cut(s) 91
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
NdeII GATC 2 cut(s) 27, 81
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 58
PaeR7I CTCGAG 2 cut(s) 11, 117
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 139, 142
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 107
PspXI VCTCGAGB 2 cut(s) 11, 117
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SalI GTCGAC 1 cut(s) 177
SatI GCNGC 2 cut(s) 138, 141
Sau3AI GATC 2 cut(s) 27, 81
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 20
SetI ASST 5 cut(s) 21, 56, 112, 118, 124
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 2 cut(s) 11, 117
SgrDI CGTCGACG 1 cut(s) 177
SinI GGWCC 1 cut(s) 107
SlaI CTCGAG 2 cut(s) 11, 117
SmlI CTYRAG 2 cut(s) 11, 117
SmoI CTYRAG 2 cut(s) 11, 117
SsiI CCGC 7 cut(s) 23, 49, 63, 140, 143, 160, 166
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 6 cut(s) 12, 84, 118, 127, 178, 193
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 132
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 107
XhoI CTCGAG 2 cut(s) 11, 117
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.