Rmu_sc0001674.1_g000003

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001674.1
OG0000336
Physical Location & Seq
Reverse (-)
10341 .. 15947
5607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001674.1_g000003.1.cds

Sequence Viewer

Length: 1152 bp
atgaaaaactgcacaaagattgagaagcttccaaaggacattttcactctgaaatcacttgaaacacttactttgtccggttgctcaaatcttcatgagtttcccatagaaatgaggaatatgggatctctgaaagttcttgaagcagatgaaattctgataaatcaattacttgccaccactagggatcagatcaagtcaatactaatatataaaagcatagacaacttttgggcttcttttcccagcagttttcttgatttaagtctagcaaactgcaatctttctgacaatgcttttcctatggagtttgcacataattacaatgaacctagaaccttgtcaatcggattctccaacttcgtccggtccaacccccggtccgatagcttcaaggtcagtcgctttcaccacattaagtatctgtgcaccgatgccaccaacgccaccctccgcttctcttcaggccttagcatgcctatggttgccaaggtcttgtcttgccagaagcccaagcccaacaactccaaacctcaaacggattcgggagaagatgatgaacgagctccgatgggcttggggatgattcttcgatggcggttgagcaaatacgacgtcagccgaactcctttgccggcagggctacaaactgaaactccctcagcacgccggaatctggagcatgccctgaatcatgtggaggtaataccgcacgatgggccgatattggtctttgggccactgagtaccccccaagtcgagttggagaggtttatgccggctgccaagcctaagacagactccaacactaatgatttggactatggcagcgagccaaaatttgctggctctggtaaggaggcaggtggagtcgacagttcgatagaccatgcaccaaatcatgtagtggcctcacctagttgtggaatgcggagcaagcatgtagaggaggatggaatttccccaaagaaactacgattgagcttggcagttggaagaaccaatctggatgctatgaccatgggtttgtgcaacgtgaaactggtcaagaagtcgtatccaaggcggttcaaggctcaaggaccgaaattccctttcatgttattcctactccggttcaagagcagtaggaactcacttggcatgagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

383

Amino Acids

42.6

Weight (kDa)

9.2

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 854
AatII GACGTC 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 854
AccI GTMKAC 1 cut(s) 873
AciI CCGC 5 cut(s) 454, 598, 710, 931, 1066
AclWI GGATC 2 cut(s) 133, 195
AcsI RAATTY 4 cut(s) 153, 839, 957, 1088
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 615
AfaI GTAC 1 cut(s) 748
AfiI CCNNNNNNNGG 5 cut(s) 183, 378, 676, 716, 923
AgsI TTSAA 5 cut(s) 62, 143, 394, 1072, 1120
AluBI AGCT 4 cut(s) 28, 390, 566, 984
AluI AGCT 4 cut(s) 28, 390, 566, 984
Alw21I GWGCWC 2 cut(s) 431, 568
Alw44I GTGCAC 1 cut(s) 427
AlwI GGATC 2 cut(s) 133, 195
AoxI GGCC 4 cut(s) 466, 719, 737, 909
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 2 cut(s) 782, 828
ApoI RAATTY 4 cut(s) 153, 839, 957, 1088
ArsI GACNNNNNNTTYG 4 cut(s) 600, 632, 1009, 1041
AspS9I GGNCC 5 cut(s) 369, 381, 719, 737, 1082
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 2 cut(s) 401, 906
AvaII GGWCC 3 cut(s) 369, 381, 1082
BaeGI GKGCMC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 568
Bbv12I GWGCWC 2 cut(s) 431, 568
BbvCI CCTCAGC 1 cut(s) 661
BbvI GCAGC 2 cut(s) 769, 840
BccI CCATC 4 cut(s) 565, 588, 710, 947
BciVI GTATCC 1 cut(s) 1068
BcnI CCSGG 1 cut(s) 379
BfaI CTAG 4 cut(s) 183, 269, 333, 918
BfuAI ACCTGC 1 cut(s) 854
BfuI GTATCC 1 cut(s) 1068
BglI GCCNNNNNGGC 1 cut(s) 640
BisI GCNGC 2 cut(s) 783, 829
BlsI GCNGC 2 cut(s) 784, 830
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 3 cut(s) 369, 381, 1082
BmgT120I GGNCC 5 cut(s) 369, 381, 719, 737, 1082
BmrFI CCNGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 424, 1000
BpmI CTGGAG 1 cut(s) 698
Bpu10I CCTNAGC 2 cut(s) 470, 661
BpuEI CTTGAG 1 cut(s) 1062
BpuMI CCSGG 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 615
BsaJI CCNNGG 4 cut(s) 377, 489, 1020, 1061
BsaWI WCCGGW 3 cut(s) 77, 366, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 378, 676, 716, 923
Bse118I RCCGGY 2 cut(s) 634, 778
Bse1I ACTGG 1 cut(s) 1047
BseDI CCNNGG 4 cut(s) 377, 489, 1020, 1061
BseGI GGATG 3 cut(s) 588, 958, 1015
BseLI CCNNNNNNNGG 5 cut(s) 183, 378, 676, 716, 923
BseMII CTCAG 2 cut(s) 675, 734
BseNI ACTGG 1 cut(s) 1047
BseRI GAGGAG 1 cut(s) 962
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 2 cut(s) 769, 840
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 4 cut(s) 468, 721, 739, 911
BsiHKAI GWGCWC 2 cut(s) 431, 568
BsiSI CCGG 7 cut(s) 78, 367, 379, 635, 670, 779, 1114
BslI CCNNNNNNNGG 5 cut(s) 183, 378, 676, 716, 923
BsmI GAATGC 1 cut(s) 933
BsnI GGCC 4 cut(s) 468, 721, 739, 911
Bsp1286I GDGCHC 2 cut(s) 431, 568
Bsp143I GATC 3 cut(s) 125, 187, 192
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 5 cut(s) 454, 598, 710, 931, 1066
BspANI GGCC 4 cut(s) 468, 721, 739, 911
BspCNI CTCAG 2 cut(s) 674, 735
BspHI TCATGA 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 854
BspPI GGATC 2 cut(s) 133, 195
BsrFI RCCGGY 2 cut(s) 634, 778
BsrI ACTGG 1 cut(s) 1047
BssAI RCCGGY 2 cut(s) 634, 778
BssECI CCNNGG 4 cut(s) 377, 489, 1020, 1061
BssMI GATC 3 cut(s) 125, 187, 192
BssNI GRCGYC 1 cut(s) 615
BssT1I CCWWGG 3 cut(s) 489, 1020, 1061
Bst4CI ACNGT 1 cut(s) 878
Bst6I CTCTTC 1 cut(s) 466
BstACI GRCGYC 1 cut(s) 615
BstC8I GCNNGC 8 cut(s) 476, 636, 667, 684, 780, 833, 847, 938
BstDEI CTNAG 4 cut(s) 470, 661, 743, 792
BstDSI CCRYGG 1 cut(s) 1020
BstF5I GGATG 3 cut(s) 588, 958, 1015
BstKTI GATC 3 cut(s) 128, 190, 195
BstMBI GATC 3 cut(s) 125, 187, 192
BstMWI GCNNNNNNNGC 4 cut(s) 443, 640, 718, 937
BstNSI RCATGY 3 cut(s) 478, 686, 944
BstSCI CCNGG 1 cut(s) 377
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 769, 840
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
BsuI GTATCC 1 cut(s) 1068
BsuRI GGCC 4 cut(s) 468, 721, 739, 911
BtgI CCRYGG 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 588, 958, 1015
BtsIMutI CAGTG 1 cut(s) 740
BveI ACCTGC 1 cut(s) 854
Cac8I GCNNGC 8 cut(s) 476, 636, 667, 684, 780, 833, 847, 938
CciI TCATGA 1 cut(s) 94
Cfr10I RCCGGY 2 cut(s) 634, 778
Cfr13I GGNCC 5 cut(s) 369, 381, 719, 737, 1082
CpoI CGGWCCG 1 cut(s) 381
Csp6I GTAC 1 cut(s) 747
CspI CGGWCCG 1 cut(s) 381
CviQI GTAC 1 cut(s) 747
DdeI CTNAG 4 cut(s) 470, 661, 743, 792
DpnI GATC 3 cut(s) 127, 189, 194
DpnII GATC 3 cut(s) 125, 187, 192
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 3 cut(s) 489, 1020, 1061
Eco147I AGGCCT 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 568
Eco47I GGWCC 3 cut(s) 369, 381, 1082
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 566
EcoT14I CCWWGG 3 cut(s) 489, 1020, 1061
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 3 cut(s) 489, 1020, 1061
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 2 cut(s) 783, 829
FokI GGATG 3 cut(s) 595, 965, 1022
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 2 cut(s) 783, 829
FspBI CTAG 4 cut(s) 183, 269, 333, 918
GluI GCNGC 2 cut(s) 783, 829
GsaI CCCAGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 4 cut(s) 468, 721, 739, 911
HapII CCGG 7 cut(s) 78, 367, 379, 635, 670, 779, 1114
Hin1I GRCGYC 1 cut(s) 615
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 7 cut(s) 351, 542, 586, 673, 691, 800, 870
HpaII CCGG 7 cut(s) 78, 367, 379, 635, 670, 779, 1114
HphI GGTGA 2 cut(s) 401, 906
Hpy166II GTNNAC 2 cut(s) 429, 874
Hpy188I TCNGA 8 cut(s) 51, 132, 159, 192, 289, 350, 385, 570
Hpy188III TCNNGA 8 cut(s) 95, 140, 257, 546, 677, 1007, 1048, 1120
Hpy8I GTNNAC 2 cut(s) 429, 874
Hpy99I CGWCG 1 cut(s) 617
HpyCH4III ACNGT 1 cut(s) 878
HpyCH4IV ACGT 2 cut(s) 615, 1035
HpyCH4V TGCA 6 cut(s) 12, 279, 314, 429, 893, 1032
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 640, 718, 937
HpyF3I CTNAG 4 cut(s) 470, 661, 743, 792
HpySE526I ACGT 2 cut(s) 615, 1035
Hsp92I GRCGYC 1 cut(s) 615
KroI GCCGGC 2 cut(s) 634, 778
KroNI GCCGGC 2 cut(s) 636, 780
Kzo9I GATC 3 cut(s) 125, 187, 192
LmnI GCTCC 3 cut(s) 571, 679, 933
Lsp1109I GCAGC 2 cut(s) 769, 840
LweI GCATC 2 cut(s) 424, 1000
MaeI CTAG 4 cut(s) 183, 269, 333, 918
MaeII ACGT 2 cut(s) 615, 1035
MalI GATC 3 cut(s) 127, 189, 194
MboI GATC 3 cut(s) 125, 187, 192
MboII GAAGA 5 cut(s) 83, 453, 563, 581, 1008
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 2 cut(s) 431, 568
MluCI AATT 6 cut(s) 153, 167, 319, 839, 957, 1088
MlyI GAGTC 2 cut(s) 794, 879
MmeI TCCRAC 5 cut(s) 381, 396, 744, 828, 973
MroNI GCCGGC 2 cut(s) 634, 778
MseI TTAA 2 cut(s) 263, 417
MslI CAYNNNNRTG 2 cut(s) 110, 479
MspI CCGG 7 cut(s) 78, 367, 379, 635, 670, 779, 1114
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 933
MwoI GCNNNNNNNGC 4 cut(s) 443, 640, 718, 937
NaeI GCCGGC 2 cut(s) 636, 780
NciI CCSGG 1 cut(s) 379
NcoI CCATGG 1 cut(s) 1020
NdeII GATC 3 cut(s) 125, 187, 192
NgoMIV GCCGGC 2 cut(s) 634, 778
NspI RCATGY 3 cut(s) 478, 686, 944
PaeI GCATGC 2 cut(s) 478, 686
PagI TCATGA 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 854
PceI AGGCCT 1 cut(s) 468
PctI GAATGC 1 cut(s) 933
PdiI GCCGGC 2 cut(s) 636, 780
PfeI GAWTC 5 cut(s) 351, 542, 586, 673, 691
PkrI GCNGC 2 cut(s) 784, 830
PleI GAGTC 2 cut(s) 794, 878
PpsI GAGTC 2 cut(s) 794, 878
Psp124BI GAGCTC 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 245
PspPI GGNCC 5 cut(s) 369, 381, 719, 737, 1082
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 748
RsaNI GTAC 1 cut(s) 747
RseI CAYNNNNRTG 2 cut(s) 110, 479
Rsr2I CGGWCCG 1 cut(s) 381
RsrII CGGWCCG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 568
SalI GTCGAC 1 cut(s) 872
SaqAI TTAA 2 cut(s) 263, 417
SatI GCNGC 2 cut(s) 783, 829
Sau3AI GATC 3 cut(s) 125, 187, 192
Sau96I GGNCC 5 cut(s) 369, 381, 719, 737, 1082
SchI GAGTC 2 cut(s) 794, 879
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 2 cut(s) 431, 568
SfaNI GCATC 2 cut(s) 424, 1000
SinI GGWCC 3 cut(s) 369, 381, 1082
SmiMI CAYNNNNRTG 2 cut(s) 110, 479
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
SphI GCATGC 2 cut(s) 478, 686
Sse9I AATT 6 cut(s) 153, 167, 319, 839, 957, 1088
SseBI AGGCCT 1 cut(s) 468
SsiI CCGC 5 cut(s) 454, 598, 710, 931, 1066
SspMI CTAG 4 cut(s) 183, 269, 333, 918
SstI GAGCTC 1 cut(s) 568
StuI AGGCCT 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 3 cut(s) 489, 1020, 1061
TaaI ACNGT 1 cut(s) 878
TaiI ACGT 2 cut(s) 618, 1038
TaqI TCGA 4 cut(s) 592, 759, 873, 881
TaqII GACCGA 1 cut(s) 1099
TasI AATT 6 cut(s) 153, 167, 319, 839, 957, 1088
TfiI GAWTC 5 cut(s) 351, 542, 586, 673, 691
Tru1I TTAA 2 cut(s) 263, 417
Tru9I TTAA 2 cut(s) 263, 417
TscAI CASTG 1 cut(s) 747
TseI GCWGC 2 cut(s) 782, 828
TspDTI ATGAA 6 cut(s) 17, 83, 165, 342, 573, 1087
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 747
VneI GTGCAC 1 cut(s) 427
VpaK11BI GGWCC 3 cut(s) 369, 381, 1082
XapI RAATTY 4 cut(s) 153, 839, 957, 1088
XceI RCATGY 3 cut(s) 478, 686, 944
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 4 cut(s) 183, 269, 333, 918
ZraI GACGTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.