Rh6AG376700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000336
Physical Location & Seq
Reverse (-)
57553990 .. 57554244
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG376700.1

Sequence Viewer

Length: 255 bp
ATGAGGCAGGAAGTAAGGCCGGTGGGAGTGGACCAATGGCGATGGAGGTTAAGGATGGAAATGAGCCAGTTGAGAAAGATGGAGACTACAACTGGTCTAATCATGGTGGATGAGGCTGGTGGACAAGTGGAGAAGGCAGTGGCGGCCCCAACAGTTATGCAGAGTTGTGAGGTACGTAGGAACATAACAGAGGAGGATGGGGTGTCACCGAAGAAGCTGAGGCTTAGCCTTGCTGTTGGTATGACCAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.53

Weight (kDa)

9.09

Isoelectric Point (pI)

71.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AfaI GTAC 1 cut(s) 174
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 2 cut(s) 17, 144
AspS9I GGNCC 2 cut(s) 31, 145
AsuHPI GGTGA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 218
BccI CCATC 4 cut(s) 36, 49, 73, 191
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 31, 145
BmiI GGNNCC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 67, 97
BseGI GGATG 3 cut(s) 60, 115, 202
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 67, 97
BseRI GAGGAG 1 cut(s) 206
BshFI GGCC 2 cut(s) 19, 146
BsiSI CCGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 19, 146
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 19, 146
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 67, 97
BssAI RCCGGY 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 218, 224
BstF5I GGATG 3 cut(s) 60, 115, 202
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSNI TACGTA 1 cut(s) 176
BsuRI GGCC 2 cut(s) 19, 146
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 3 cut(s) 60, 115, 202
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 31, 145
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 103
CviJI RGCY 7 cut(s) 19, 66, 116, 146, 217, 223, 228
CviKI_1 RGCY 7 cut(s) 19, 66, 116, 146, 217, 223, 228
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 218, 224
Eco105I TACGTA 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 31
FaeI CATG 1 cut(s) 106
FaiI YATR 4 cut(s) 104, 158, 185, 242
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 3 cut(s) 67, 122, 209
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 19, 146
HapII CCGG 1 cut(s) 20
Hin1II CATG 1 cut(s) 106
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 31, 122
Hpy8I GTNNAC 2 cut(s) 31, 122
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 218, 224
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 106
LpnPI CCDG 4 cut(s) 33, 78, 80, 102
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 204
MboII GAAGA 1 cut(s) 223
MnlI CCTC 6 cut(s) 39, 106, 163, 184, 187, 213
MseI TTAA 2 cut(s) 50, 253
MspI CCGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 204
PkrI GCNGC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 31, 145
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 50, 253
SatI GCNGC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 31, 145
SetI ASST 4 cut(s) 50, 174, 178, 219
SgeI CNNG 8 cut(s) 20, 32, 79, 105, 115, 129, 137, 242
SinI GGWCC 1 cut(s) 31
SnaBI TACGTA 1 cut(s) 176
SsiI CCGC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 178
TauI GCSGC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 50, 253
Tru9I TTAA 2 cut(s) 50, 253
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspRI CASTG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.