Rmu_sc0002979.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002979.1
OG0000336
Physical Location & Seq
Reverse (-)
50579 .. 51531
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002979.1_g000009.1.cds

Sequence Viewer

Length: 864 bp
atggaagaggtggatgagatggctgtccgactggctgcttctcttgggctggcggatgcttttaacaaaagatcgttcatgggcatgttcggtcgtgcatggagattgaatggacggtacaccgctcatgaacatggagaccgttttttgttcaccttaacggatccaactaaccgtagccgcatccttcgcagtggtccttggggttttgatagagctccagttgtcctagcaccgtatgatggggtgggagcaatcaaggatgtcccgctctctaccttagctttttggatcaaggtacataggctgccaccagactttcataccaatcggtgcttgcgaagaattggcaatgctttggggcgatatatgcagaaagacataacagagtttggagagggaaggatttggatccaggttgagatggatattttgcagcctgtgattttccgacgtagcttcacggtggatgatgggattgacgtagatctggatttcttctttgaaatcctcaatggaagatgtcaagattgtggtttgattactcatgtgggtttaccatgtgatgggtcgcccttactggtggaggtcaggagtgaacagtcgccggcacggcgaaaccttgatagggtgttaagctgtgtggatgtgtctccccatgttggaccaatggtgtttggagcacaaccgagtccacaagttggactagggagatttctacaagtagctaaaccaaaggggaggaaggaaatcaagcgaaagattgttaccaacgatgctgaaggaagttctggagtccgcaaggcagctgtgcctgagctggtggagactggcagtgaaccaactttgggaggtccagggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RVT_1 zf-CCHC_4

Protein Analysis

287

Amino Acids

31.84

Weight (kDa)

8.29

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 566, 701
AccBSI CCGCTC 2 cut(s) 125, 271
AciI CCGC 5 cut(s) 53, 123, 181, 269, 799
AclWI GGATC 5 cut(s) 158, 171, 299, 406, 419
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 2 cut(s) 119, 300
AfiI CCNNNNNNNGG 6 cut(s) 242, 566, 628, 662, 701, 848
AgsI TTSAA 2 cut(s) 109, 506
AjnI CCWGG 2 cut(s) 414, 856
AluBI AGCT 7 cut(s) 218, 284, 459, 639, 728, 809, 820
AluI AGCT 7 cut(s) 218, 284, 459, 639, 728, 809, 820
Alw21I GWGCWC 2 cut(s) 220, 685
Alw26I GTCTC 3 cut(s) 132, 657, 821
AlwI GGATC 5 cut(s) 158, 171, 299, 406, 419
ApeKI GCWGC 4 cut(s) 35, 307, 436, 806
AspS9I GGNCC 3 cut(s) 197, 665, 854
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 3 cut(s) 197, 665, 854
BamHI GGATCC 2 cut(s) 163, 411
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 2 cut(s) 220, 685
BbvI GCAGC 4 cut(s) 22, 294, 448, 818
BccI CCATC 5 cut(s) 13, 236, 418, 467, 560
BceAI ACGGC 1 cut(s) 629
BciT130I CCWGG 2 cut(s) 416, 858
BcoDI GTCTC 3 cut(s) 132, 657, 821
BfaI CTAG 2 cut(s) 230, 707
BglI GCCNNNNNGGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 487
BisI GCNGC 5 cut(s) 36, 181, 308, 437, 807
BlsI GCNGC 5 cut(s) 37, 182, 309, 438, 808
Bme1390I CCNGG 2 cut(s) 416, 858
Bme18I GGWCC 3 cut(s) 197, 665, 854
BmgT120I GGNCC 3 cut(s) 197, 665, 854
BmiI GGNNCC 2 cut(s) 165, 413
BmrFI CCNGG 2 cut(s) 416, 858
BmsI GCATC 3 cut(s) 46, 192, 766
BpmI CTGGAG 2 cut(s) 204, 813
Bpu10I CCTNAGC 2 cut(s) 280, 816
BsaBI GATNNNNATC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 200, 857
Bsc4I CCNNNNNNNGG 6 cut(s) 242, 566, 628, 662, 701, 848
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 4 cut(s) 36, 221, 585, 835
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 2 cut(s) 416, 858
BseDI CCNNGG 2 cut(s) 200, 857
BseGI GGATG 6 cut(s) 19, 61, 183, 268, 475, 652
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 6 cut(s) 242, 566, 628, 662, 701, 848
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 4 cut(s) 36, 221, 585, 835
BseXI GCAGC 4 cut(s) 22, 294, 448, 818
Bsh1285I CGRYCG 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 220, 685
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 6 cut(s) 242, 566, 628, 662, 701, 848
BsmAI GTCTC 3 cut(s) 132, 657, 821
BsmFI GGGAC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 220, 685
Bsp143I GATC 5 cut(s) 71, 163, 291, 411, 487
BspACI CCGC 5 cut(s) 53, 123, 181, 269, 799
BspCNI CTCAG 1 cut(s) 808
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 165, 413
BspPI GGATC 5 cut(s) 158, 171, 299, 406, 419
BspTNI GGTCTC 1 cut(s) 132
BsrBI CCGCTC 2 cut(s) 125, 271
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 4 cut(s) 36, 221, 585, 835
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 2 cut(s) 200, 857
BssMI GATC 5 cut(s) 71, 163, 291, 411, 487
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 416, 858
Bst4CI ACNGT 6 cut(s) 117, 143, 176, 237, 466, 603
BstC8I GCNNGC 3 cut(s) 51, 338, 609
BstDEI CTNAG 2 cut(s) 280, 816
BstF5I GGATG 6 cut(s) 19, 61, 183, 268, 475, 652
BstKTI GATC 5 cut(s) 74, 166, 294, 414, 490
BstMAI GTCTC 3 cut(s) 132, 657, 821
BstMBI GATC 5 cut(s) 71, 163, 291, 411, 487
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 189, 370, 613
BstNI CCWGG 2 cut(s) 416, 858
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 414, 856
BstV1I GCAGC 4 cut(s) 22, 294, 448, 818
BstX2I RGATCY 3 cut(s) 163, 411, 487
BstYI RGATCY 3 cut(s) 163, 411, 487
BtsCI GGATG 6 cut(s) 19, 61, 183, 268, 475, 652
BtsI GCAGTG 2 cut(s) 199, 841
BtsIMutI CAGTG 2 cut(s) 199, 841
Cac8I GCNNGC 3 cut(s) 51, 338, 609
CciI TCATGA 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 197, 665, 854
Csp6I GTAC 2 cut(s) 118, 299
CviAII CATG 8 cut(s) 79, 85, 99, 128, 134, 548, 561, 659
CviQI GTAC 2 cut(s) 118, 299
DdeI CTNAG 2 cut(s) 280, 816
DpnI GATC 5 cut(s) 73, 165, 293, 413, 489
DpnII GATC 5 cut(s) 71, 163, 291, 411, 487
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 3 cut(s) 197, 665, 854
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 414, 856
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 8 cut(s) 82, 88, 102, 131, 137, 551, 564, 662
FaqI GGGAC 1 cut(s) 251
FatI CATG 8 cut(s) 78, 84, 98, 127, 133, 547, 560, 658
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 5 cut(s) 36, 181, 308, 437, 807
FokI GGATG 6 cut(s) 26, 68, 170, 275, 482, 659
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 5 cut(s) 36, 181, 308, 437, 807
FspBI CTAG 2 cut(s) 230, 707
GluI GCNGC 5 cut(s) 36, 181, 308, 437, 807
GsuI CTGGAG 2 cut(s) 204, 813
HapII CCGG 1 cut(s) 608
Hin1II CATG 8 cut(s) 82, 88, 102, 131, 137, 551, 564, 662
HinfI GANTC 2 cut(s) 691, 795
HpaII CCGG 1 cut(s) 608
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 6 cut(s) 120, 153, 557, 599, 695, 839
Hpy188I TCNGA 2 cut(s) 29, 452
Hpy188III TCNNGA 5 cut(s) 128, 491, 527, 592, 792
Hpy8I GTNNAC 6 cut(s) 120, 153, 557, 599, 695, 839
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 4 cut(s) 197, 396, 739, 776
HpyCH4III ACNGT 6 cut(s) 117, 143, 176, 237, 466, 603
HpyCH4IV ACGT 2 cut(s) 454, 483
HpyCH4V TGCA 3 cut(s) 98, 373, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 370, 613
HpyF3I CTNAG 2 cut(s) 280, 816
HpySE526I ACGT 2 cut(s) 454, 483
Hsp92II CATG 8 cut(s) 82, 88, 102, 131, 137, 551, 564, 662
KroI GCCGGC 1 cut(s) 607
KroNI GCCGGC 1 cut(s) 609
Kzo9I GATC 5 cut(s) 71, 163, 291, 411, 487
LmnI GCTCC 3 cut(s) 223, 251, 680
Lsp1109I GCAGC 4 cut(s) 22, 294, 448, 818
LweI GCATC 3 cut(s) 46, 192, 766
MaeI CTAG 2 cut(s) 230, 707
MaeII ACGT 2 cut(s) 454, 483
MaeIII GTNAC 1 cut(s) 766
MalI GATC 5 cut(s) 73, 165, 293, 413, 489
MbiI CCGCTC 2 cut(s) 125, 271
MboI GATC 5 cut(s) 71, 163, 291, 411, 487
MboII GAAGA 4 cut(s) 17, 354, 490, 531
MflI RGATCY 3 cut(s) 163, 411, 487
MhlI GDGCHC 2 cut(s) 220, 685
MluCI AATT 1 cut(s) 345
MlyI GAGTC 2 cut(s) 700, 804
MmeI TCCRAC 5 cut(s) 52, 191, 475, 643, 682
MnlI CCTC 5 cut(s) 391, 521, 580, 735, 845
MroNI GCCGGC 1 cut(s) 607
MseI TTAA 3 cut(s) 63, 158, 635
MslI CAYNNNNRTG 2 cut(s) 83, 132
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 416, 858
MvaI CCWGG 2 cut(s) 416, 858
MwoI GCNNNNNNNGC 3 cut(s) 189, 370, 613
NaeI GCCGGC 1 cut(s) 609
NdeII GATC 5 cut(s) 71, 163, 291, 411, 487
NgoMIV GCCGGC 1 cut(s) 607
NlaIII CATG 8 cut(s) 82, 88, 102, 131, 137, 551, 564, 662
NlaIV GGNNCC 2 cut(s) 165, 413
NspI RCATGY 1 cut(s) 88
PagI TCATGA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PdiI GCCGGC 1 cut(s) 609
PflMI CCANNNNNTGG 2 cut(s) 566, 701
PkrI GCNGC 5 cut(s) 37, 182, 309, 438, 808
PleI GAGTC 2 cut(s) 699, 803
PpsI GAGTC 2 cut(s) 699, 803
Psp124BI GAGCTC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 414, 856
PspGI CCWGG 2 cut(s) 414, 856
PspN4I GGNNCC 2 cut(s) 165, 413
PspPI GGNCC 3 cut(s) 197, 665, 854
PsuI RGATCY 3 cut(s) 163, 411, 487
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 2 cut(s) 119, 300
RsaNI GTAC 2 cut(s) 118, 299
RseI CAYNNNNRTG 2 cut(s) 83, 132
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 3 cut(s) 63, 158, 635
SatI GCNGC 5 cut(s) 36, 181, 308, 437, 807
Sau3AI GATC 5 cut(s) 71, 163, 291, 411, 487
Sau96I GGNCC 3 cut(s) 197, 665, 854
SchI GAGTC 2 cut(s) 700, 804
ScrFI CCNGG 2 cut(s) 416, 858
SduI GDGCHC 2 cut(s) 220, 685
SfaNI GCATC 3 cut(s) 46, 192, 766
SinI GGWCC 3 cut(s) 197, 665, 854
SmiMI CAYNNNNRTG 2 cut(s) 83, 132
Sse9I AATT 1 cut(s) 345
SsiI CCGC 5 cut(s) 53, 123, 181, 269, 799
SspMI CTAG 2 cut(s) 230, 707
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 414, 856
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 6 cut(s) 117, 143, 176, 237, 466, 603
TaiI ACGT 2 cut(s) 457, 486
TaqII GACCGA 1 cut(s) 80
TasI AATT 1 cut(s) 345
TauI GCSGC 1 cut(s) 183
Tru1I TTAA 3 cut(s) 63, 158, 635
Tru9I TTAA 3 cut(s) 63, 158, 635
TscAI CASTG 2 cut(s) 199, 841
TseI GCWGC 4 cut(s) 35, 307, 436, 806
TspDTI ATGAA 3 cut(s) 67, 144, 311
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 2 cut(s) 199, 841
Van91I CCANNNNNTGG 2 cut(s) 566, 701
VpaK11BI GGWCC 3 cut(s) 197, 665, 854
XceI RCATGY 1 cut(s) 88
XspI CTAG 2 cut(s) 230, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.