Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 320 |
| AccBSI | CCGCTC | 2 cut(s) | 107, 391 |
| AccI | GTMKAC | 1 cut(s) | 98 |
| AciI | CCGC | 5 cut(s) | 68, 86, 105, 117, 389 |
| AclWI | GGATC | 2 cut(s) | 377, 513 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 320 |
| AgsI | TTSAA | 4 cut(s) | 206, 452, 472, 500 |
| AjnI | CCWGG | 1 cut(s) | 267 |
| AluBI | AGCT | 1 cut(s) | 362 |
| AluI | AGCT | 1 cut(s) | 362 |
| Alw26I | GTCTC | 1 cut(s) | 159 |
| AlwI | GGATC | 2 cut(s) | 377, 513 |
| AoxI | GGCC | 1 cut(s) | 118 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 137, 169 |
| AspLEI | GCGC | 1 cut(s) | 434 |
| AspS9I | GGNCC | 2 cut(s) | 241, 275 |
| AsuII | TTCGAA | 1 cut(s) | 418 |
| AvaII | GGWCC | 2 cut(s) | 241, 275 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| BccI | CCATC | 1 cut(s) | 314 |
| BceAI | ACGGC | 2 cut(s) | 55, 105 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 1 cut(s) | 269 |
| BcoDI | GTCTC | 1 cut(s) | 159 |
| BfaI | CTAG | 2 cut(s) | 308, 359 |
| BisI | GCNGC | 3 cut(s) | 87, 118, 389 |
| BlsI | GCNGC | 3 cut(s) | 88, 119, 390 |
| Bme1390I | CCNGG | 1 cut(s) | 269 |
| Bme18I | GGWCC | 2 cut(s) | 241, 275 |
| BmgT120I | GGNCC | 2 cut(s) | 241, 275 |
| BmiI | GGNNCC | 2 cut(s) | 42, 243 |
| BmrFI | CCNGG | 1 cut(s) | 269 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| BpmI | CTGGAG | 1 cut(s) | 251 |
| Bpu10I | CCTNAGC | 1 cut(s) | 24 |
| Bpu14I | TTCGAA | 1 cut(s) | 418 |
| BsaBI | GATNNNNATC | 1 cut(s) | 255 |
| BsaJI | CCNNGG | 2 cut(s) | 268, 278 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 320 |
| Bse1I | ACTGG | 1 cut(s) | 224 |
| Bse3DI | GCAATG | 1 cut(s) | 441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 255 |
| BseBI | CCWGG | 1 cut(s) | 269 |
| BseDI | CCNNGG | 2 cut(s) | 268, 278 |
| BseGI | GGATG | 1 cut(s) | 346 |
| BseJI | GATNNNNATC | 1 cut(s) | 255 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 320 |
| BseMI | GCAATG | 1 cut(s) | 441 |
| BseMII | CTCAG | 1 cut(s) | 19 |
| BseNI | ACTGG | 1 cut(s) | 224 |
| BseRI | GAGGAG | 1 cut(s) | 53 |
| BseX3I | CGGCCG | 1 cut(s) | 118 |
| BsgI | GTGCAG | 1 cut(s) | 145 |
| Bsh1285I | CGRYCG | 1 cut(s) | 121 |
| BshFI | GGCC | 1 cut(s) | 120 |
| BsiEI | CGRYCG | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 529 |
| BslFI | GGGAC | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 320 |
| BsmAI | GTCTC | 1 cut(s) | 159 |
| BsmFI | GGGAC | 1 cut(s) | 329 |
| BsnI | GGCC | 1 cut(s) | 120 |
| Bsp119I | TTCGAA | 1 cut(s) | 418 |
| Bsp143I | GATC | 3 cut(s) | 333, 369, 505 |
| BspACI | CCGC | 5 cut(s) | 68, 86, 105, 117, 389 |
| BspANI | GGCC | 1 cut(s) | 120 |
| BspCNI | CTCAG | 1 cut(s) | 18 |
| BspLI | GGNNCC | 2 cut(s) | 42, 243 |
| BspPI | GGATC | 2 cut(s) | 377, 513 |
| BspT104I | TTCGAA | 1 cut(s) | 418 |
| BsrBI | CCGCTC | 2 cut(s) | 107, 391 |
| BsrDI | GCAATG | 1 cut(s) | 441 |
| BsrI | ACTGG | 1 cut(s) | 224 |
| BssECI | CCNNGG | 2 cut(s) | 268, 278 |
| BssMI | GATC | 3 cut(s) | 333, 369, 505 |
| Bst2UI | CCWGG | 1 cut(s) | 269 |
| Bst4CI | ACNGT | 3 cut(s) | 131, 175, 544 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstBI | TTCGAA | 1 cut(s) | 418 |
| BstC8I | GCNNGC | 3 cut(s) | 91, 115, 164 |
| BstDEI | CTNAG | 2 cut(s) | 5, 24 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 346 |
| BstHHI | GCGC | 1 cut(s) | 434 |
| BstKTI | GATC | 3 cut(s) | 336, 372, 508 |
| BstMAI | GTCTC | 1 cut(s) | 159 |
| BstMBI | GATC | 3 cut(s) | 333, 369, 505 |
| BstMCI | CGRYCG | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 67, 385 |
| BstNI | CCWGG | 1 cut(s) | 269 |
| BstSCI | CCNGG | 1 cut(s) | 267 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 1 cut(s) | 505 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 505 |
| BstZI | CGGCCG | 1 cut(s) | 118 |
| BsuRI | GGCC | 1 cut(s) | 120 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtsCI | GGATG | 1 cut(s) | 346 |
| BtsIMutI | CAGTG | 2 cut(s) | 136, 402 |
| Cac8I | GCNNGC | 3 cut(s) | 91, 115, 164 |
| CfoI | GCGC | 1 cut(s) | 434 |
| Cfr13I | GGNCC | 2 cut(s) | 241, 275 |
| CseI | GACGC | 1 cut(s) | 123 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 361, 389, 396, 424 |
| CviAII | CATG | 3 cut(s) | 13, 47, 212 |
| CviJI | RGCY | 6 cut(s) | 28, 43, 93, 120, 296, 362 |
| CviKI_1 | RGCY | 6 cut(s) | 28, 43, 93, 120, 296, 362 |
| DdeI | CTNAG | 2 cut(s) | 5, 24 |
| DpnI | GATC | 3 cut(s) | 335, 371, 507 |
| DpnII | GATC | 3 cut(s) | 333, 369, 505 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| EagI | CGGCCG | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| EclXI | CGGCCG | 1 cut(s) | 118 |
| Eco47I | GGWCC | 2 cut(s) | 241, 275 |
| Eco52I | CGGCCG | 1 cut(s) | 118 |
| EcoRII | CCWGG | 1 cut(s) | 267 |
| FaeI | CATG | 3 cut(s) | 16, 50, 215 |
| FaiI | YATR | 8 cut(s) | 14, 48, 76, 213, 316, 318, 367, 447 |
| FaqI | GGGAC | 1 cut(s) | 329 |
| FatI | CATG | 3 cut(s) | 12, 46, 211 |
| FauNDI | CATATG | 1 cut(s) | 316 |
| FblI | GTMKAC | 1 cut(s) | 98 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 118, 389 |
| FokI | GGATG | 1 cut(s) | 353 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 118, 389 |
| FspBI | CTAG | 2 cut(s) | 308, 359 |
| GlaI | GCGC | 1 cut(s) | 433 |
| GluI | GCNGC | 3 cut(s) | 87, 118, 389 |
| GsuI | CTGGAG | 1 cut(s) | 251 |
| HaeIII | GGCC | 1 cut(s) | 120 |
| HapII | CCGG | 1 cut(s) | 529 |
| HgaI | GACGC | 1 cut(s) | 123 |
| HhaI | GCGC | 1 cut(s) | 434 |
| Hin1II | CATG | 3 cut(s) | 16, 50, 215 |
| Hin6I | GCGC | 1 cut(s) | 432 |
| HinP1I | GCGC | 1 cut(s) | 432 |
| HincII | GTYRAC | 3 cut(s) | 99, 138, 171 |
| HindII | GTYRAC | 3 cut(s) | 99, 138, 171 |
| HinfI | GANTC | 3 cut(s) | 262, 483, 489 |
| HpaII | CCGG | 1 cut(s) | 529 |
| Hpy166II | GTNNAC | 5 cut(s) | 99, 138, 171, 231, 547 |
| Hpy188I | TCNGA | 5 cut(s) | 8, 241, 261, 488, 494 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| Hpy8I | GTNNAC | 5 cut(s) | 99, 138, 171, 231, 547 |
| Hpy99I | CGWCG | 1 cut(s) | 554 |
| HpyCH4III | ACNGT | 3 cut(s) | 131, 175, 544 |
| HpyCH4V | TGCA | 2 cut(s) | 162, 514 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 67, 385 |
| HpyF3I | CTNAG | 2 cut(s) | 5, 24 |
| Hsp92II | CATG | 3 cut(s) | 16, 50, 215 |
| HspAI | GCGC | 1 cut(s) | 432 |
| Kzo9I | GATC | 3 cut(s) | 333, 369, 505 |
| LmnI | GCTCC | 2 cut(s) | 40, 329 |
| MaeI | CTAG | 2 cut(s) | 308, 359 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 3 cut(s) | 335, 371, 507 |
| MbiI | CCGCTC | 2 cut(s) | 107, 391 |
| MboI | GATC | 3 cut(s) | 333, 369, 505 |
| MboII | GAAGA | 4 cut(s) | 47, 407, 432, 517 |
| MflI | RGATCY | 1 cut(s) | 505 |
| MluCI | AATT | 2 cut(s) | 179, 423 |
| MmeI | TCCRAC | 3 cut(s) | 150, 219, 307 |
| MnlI | CCTC | 5 cut(s) | 31, 54, 72, 90, 208 |
| MseI | TTAA | 2 cut(s) | 177, 185 |
| MspI | CCGG | 1 cut(s) | 529 |
| MspR9I | CCNGG | 1 cut(s) | 269 |
| MvaI | CCWGG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 67, 385 |
| NdeI | CATATG | 1 cut(s) | 316 |
| NdeII | GATC | 3 cut(s) | 333, 369, 505 |
| NlaIII | CATG | 3 cut(s) | 16, 50, 215 |
| NlaIV | GGNNCC | 2 cut(s) | 42, 243 |
| NspV | TTCGAA | 1 cut(s) | 418 |
| PfeI | GAWTC | 3 cut(s) | 262, 483, 489 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 88, 119, 390 |
| Psp6I | CCWGG | 1 cut(s) | 267 |
| PspGI | CCWGG | 1 cut(s) | 267 |
| PspN4I | GGNNCC | 2 cut(s) | 42, 243 |
| PspPI | GGNCC | 2 cut(s) | 241, 275 |
| PsuI | RGATCY | 1 cut(s) | 505 |
| SalI | GTCGAC | 1 cut(s) | 97 |
| SaqAI | TTAA | 2 cut(s) | 177, 185 |
| SatI | GCNGC | 3 cut(s) | 87, 118, 389 |
| Sau3AI | GATC | 3 cut(s) | 333, 369, 505 |
| Sau96I | GGNCC | 2 cut(s) | 241, 275 |
| ScrFI | CCNGG | 1 cut(s) | 269 |
| SetI | ASST | 6 cut(s) | 25, 150, 236, 364, 378, 520 |
| SfuI | TTCGAA | 1 cut(s) | 418 |
| SinI | GGWCC | 2 cut(s) | 241, 275 |
| Sse9I | AATT | 2 cut(s) | 179, 423 |
| SsiI | CCGC | 5 cut(s) | 68, 86, 105, 117, 389 |
| SspMI | CTAG | 2 cut(s) | 308, 359 |
| StyD4I | CCNGG | 1 cut(s) | 267 |
| TaaI | ACNGT | 3 cut(s) | 131, 175, 544 |
| TaqI | TCGA | 3 cut(s) | 98, 393, 418 |
| TasI | AATT | 2 cut(s) | 179, 423 |
| TauI | GCSGC | 3 cut(s) | 89, 120, 391 |
| TfiI | GAWTC | 3 cut(s) | 262, 483, 489 |
| Tru1I | TTAA | 2 cut(s) | 177, 185 |
| Tru9I | TTAA | 2 cut(s) | 177, 185 |
| TscAI | CASTG | 2 cut(s) | 136, 409 |
| TspGWI | ACGGA | 2 cut(s) | 267, 479 |
| TspRI | CASTG | 2 cut(s) | 136, 409 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 2 cut(s) | 241, 275 |
| XmiI | GTMKAC | 1 cut(s) | 98 |
| XspI | CTAG | 2 cut(s) | 308, 359 |