Rmu_sc0002061.1_g000010

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002061.1
OG0000336
Physical Location & Seq
Reverse (-)
36303 .. 37657
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002061.1_g000010.1.cds

Sequence Viewer

Length: 849 bp
atggaggaggtggatgagatgactgttcgactgcctgcttctcttggactagcggatgtttgcaagctgatgaatcttcgtccggctagtggagagggtttgtgtcgttctcagacgtatctggtggggaagttgttgacagctagggctttcgacaaaagatcattcatgggcatattccggcaggcatggaggtggaatggaagatacatcgctcaggaacatagagatcgcattctgttcactttgacggatccaacagatcataaccggatccttcgaggtggtccttggggttttgatagagctccggttgtcctagcatcgtatgatgggccgagtccacaagttgagctggatagattcctgccagcacctaaaccaaaggggaggaagaaaatcaagcttaagcttgctaccggcggtggtgaaggaagttctggggtgcacattgcacctctgaacgagcaggtggagaatggtaatgaaacatctctgggaggttcagggcaggagctaattgagagtggtagttctattgagaaggagttgatggaggcagctcctagttgtggtatgagtaggaaacgtgtggatgaagatggcatctctccaaagaagctgcggttgaaagtatacaagaagaggccgggaaggctaaaaggggcaaagaataaggcaaaggaacttaaggttgtgcatgcttcacctatgaagaagtcatcgacaaagaagctcaagactcctaggaaggaggagaaattggtgaatggactaccagaattcaccgtggtggaggcagttcatggttccaacccatcaaagggtaaggagccaatagttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

282

Amino Acids

31.05

Weight (kDa)

9.86

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 636
AciI CCGC 3 cut(s) 53, 423, 625
AclWI GGATC 4 cut(s) 248, 261, 268, 281
AcsI RAATTY 1 cut(s) 782
AfiI CCNNNNNNNGG 4 cut(s) 89, 572, 823, 824
AflII CTTAAG 2 cut(s) 407, 689
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 1 cut(s) 631
AleI CACNNNNGTG 1 cut(s) 791
Alw21I GWGCWC 2 cut(s) 310, 450
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 4 cut(s) 248, 261, 268, 281
AoxI GGCC 2 cut(s) 335, 647
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 2 cut(s) 560, 622
ApoI RAATTY 1 cut(s) 782
AspA2I CCTAGG 1 cut(s) 746
AspS9I GGNCC 2 cut(s) 287, 335
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 4 cut(s) 440, 699, 778, 778
AvaII GGWCC 1 cut(s) 287
AvrII CCTAGG 1 cut(s) 746
BaeGI GKGCMC 1 cut(s) 450
BamHI GGATCC 2 cut(s) 253, 273
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 2 cut(s) 310, 450
BbvI GCAGC 2 cut(s) 572, 609
BccI CCATC 4 cut(s) 326, 547, 596, 826
BcnI CCSGG 1 cut(s) 651
BfaI CTAG 6 cut(s) 50, 87, 144, 320, 567, 747
BfrI CTTAAG 2 cut(s) 407, 689
BfuAI ACCTGC 1 cut(s) 460
BglI GCCNNNNNGGC 1 cut(s) 655
BisI GCNGC 2 cut(s) 561, 623
BlnI CCTAGG 1 cut(s) 746
BlsI GCNGC 2 cut(s) 562, 624
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 287, 335
BmiI GGNNCC 4 cut(s) 255, 275, 811, 834
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 2 cut(s) 332, 615
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 1 cut(s) 651
BsaJI CCNNGG 3 cut(s) 290, 746, 789
BsaWI WCCGGW 2 cut(s) 270, 310
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 572, 823, 824
Bse118I RCCGGY 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 3 cut(s) 290, 746, 789
BseGI GGATG 3 cut(s) 19, 61, 601
BseLI CCNNNNNNNGG 4 cut(s) 89, 572, 823, 824
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 125, 230
BseRI GAGGAG 2 cut(s) 20, 770
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 2 cut(s) 572, 609
BshFI GGCC 2 cut(s) 337, 649
BsiHKAI GWGCWC 2 cut(s) 310, 450
BsiSI CCGG 6 cut(s) 83, 181, 271, 311, 420, 650
BslI CCNNNNNNNGG 4 cut(s) 89, 572, 823, 824
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 2 cut(s) 337, 649
Bsp1286I GDGCHC 2 cut(s) 310, 450
Bsp143I GATC 5 cut(s) 161, 229, 253, 262, 273
BspACI CCGC 3 cut(s) 53, 423, 625
BspANI GGCC 2 cut(s) 337, 649
BspCNI CTCAG 2 cut(s) 124, 229
BspLI GGNNCC 4 cut(s) 255, 275, 811, 834
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 4 cut(s) 248, 261, 268, 281
BspTI CTTAAG 2 cut(s) 407, 689
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 3 cut(s) 290, 746, 789
BssMI GATC 5 cut(s) 161, 229, 253, 262, 273
BssNAI GTATAC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 290, 746
Bst1107I GTATAC 1 cut(s) 637
Bst4CI ACNGT 2 cut(s) 25, 790
Bst6I CTCTTC 1 cut(s) 638
BstAFI CTTAAG 2 cut(s) 407, 689
BstC8I GCNNGC 6 cut(s) 36, 65, 186, 372, 414, 702
BstDEI CTNAG 2 cut(s) 111, 216
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 19, 61, 601
BstKTI GATC 5 cut(s) 164, 232, 256, 265, 276
BstMBI GATC 5 cut(s) 161, 229, 253, 262, 273
BstMWI GCNNNNNNNGC 1 cut(s) 655
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 572, 609
BstX2I RGATCY 2 cut(s) 253, 273
BstYI RGATCY 2 cut(s) 253, 273
BstZ17I GTATAC 1 cut(s) 637
BsuRI GGCC 2 cut(s) 337, 649
BtgI CCRYGG 1 cut(s) 789
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 3 cut(s) 19, 61, 601
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 6 cut(s) 36, 65, 186, 372, 414, 702
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 287, 335
CviAII CATG 4 cut(s) 169, 189, 701, 806
DdeI CTNAG 2 cut(s) 111, 216
DpnI GATC 5 cut(s) 163, 231, 255, 264, 275
DpnII GATC 5 cut(s) 161, 229, 253, 262, 273
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 290, 746
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 782
EcoT14I CCWWGG 2 cut(s) 290, 746
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 290, 746
FaeI CATG 4 cut(s) 172, 192, 704, 809
FatI CATG 4 cut(s) 168, 188, 700, 805
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 2 cut(s) 561, 623
FokI GGATG 3 cut(s) 26, 68, 608
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 2 cut(s) 561, 623
FspBI CTAG 6 cut(s) 50, 87, 144, 320, 567, 747
GluI GCNGC 2 cut(s) 561, 623
HaeIII GGCC 2 cut(s) 337, 649
HapII CCGG 6 cut(s) 83, 181, 271, 311, 420, 650
Hin1II CATG 4 cut(s) 172, 192, 704, 809
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 2 cut(s) 404, 410
HinfI GANTC 4 cut(s) 73, 340, 363, 742
HpaII CCGG 6 cut(s) 83, 181, 271, 311, 420, 650
HphI GGTGA 4 cut(s) 440, 699, 778, 778
Hpy166II GTNNAC 5 cut(s) 138, 243, 344, 448, 637
Hpy188I TCNGA 2 cut(s) 114, 462
Hpy188III TCNNGA 2 cut(s) 218, 739
Hpy8I GTNNAC 5 cut(s) 138, 243, 344, 448, 637
HpyAV CCTTC 5 cut(s) 287, 425, 538, 648, 745
HpyCH4III ACNGT 2 cut(s) 25, 790
HpyCH4IV ACGT 2 cut(s) 116, 589
HpyCH4V TGCA 4 cut(s) 63, 448, 455, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 655
HpyF3I CTNAG 2 cut(s) 111, 216
HpySE526I ACGT 2 cut(s) 116, 589
Hsp92II CATG 4 cut(s) 172, 192, 704, 809
Kzo9I GATC 5 cut(s) 161, 229, 253, 262, 273
LmnI GCTCC 4 cut(s) 313, 514, 568, 832
Lsp1109I GCAGC 2 cut(s) 572, 609
LweI GCATC 2 cut(s) 332, 615
MaeI CTAG 6 cut(s) 50, 87, 144, 320, 567, 747
MaeII ACGT 2 cut(s) 116, 589
MalI GATC 5 cut(s) 163, 231, 255, 264, 275
MboI GATC 5 cut(s) 161, 229, 253, 262, 273
MboII GAAGA 6 cut(s) 68, 216, 406, 611, 655, 727
MflI RGATCY 2 cut(s) 253, 273
MhlI GDGCHC 2 cut(s) 310, 450
MluCI AATT 3 cut(s) 519, 761, 782
MlyI GAGTC 2 cut(s) 349, 736
MmeI TCCRAC 2 cut(s) 281, 837
MseI TTAA 2 cut(s) 408, 690
MslI CAYNNNNRTG 2 cut(s) 193, 791
MspCI CTTAAG 2 cut(s) 407, 689
MspI CCGG 6 cut(s) 83, 181, 271, 311, 420, 650
MspR9I CCNGG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 655
NciI CCSGG 1 cut(s) 651
NdeII GATC 5 cut(s) 161, 229, 253, 262, 273
NlaIII CATG 4 cut(s) 172, 192, 704, 809
NlaIV GGNNCC 4 cut(s) 255, 275, 811, 834
NmeAIII GCCGAG 1 cut(s) 363
NspI RCATGY 1 cut(s) 704
OliI CACNNNNGTG 1 cut(s) 791
PaeI GCATGC 1 cut(s) 704
PaqCI CACCTGC 1 cut(s) 460
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 73, 363
PkrI GCNGC 2 cut(s) 562, 624
PleI GAGTC 2 cut(s) 348, 736
PpsI GAGTC 2 cut(s) 348, 736
Psp124BI GAGCTC 1 cut(s) 310
PspN4I GGNNCC 4 cut(s) 255, 275, 811, 834
PspPI GGNCC 2 cut(s) 287, 335
PsuI RGATCY 2 cut(s) 253, 273
RseI CAYNNNNRTG 2 cut(s) 193, 791
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 408, 690
SatI GCNGC 2 cut(s) 561, 623
Sau3AI GATC 5 cut(s) 161, 229, 253, 262, 273
Sau96I GGNCC 2 cut(s) 287, 335
SchI GAGTC 2 cut(s) 349, 736
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 310, 450
SfaNI GCATC 2 cut(s) 332, 615
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 193, 791
SmlI CTYRAG 3 cut(s) 407, 689, 737
SmoI CTYRAG 3 cut(s) 407, 689, 737
SphI GCATGC 1 cut(s) 704
Sse9I AATT 3 cut(s) 519, 761, 782
SsiI CCGC 3 cut(s) 53, 423, 625
SspMI CTAG 6 cut(s) 50, 87, 144, 320, 567, 747
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 2 cut(s) 290, 746
TaaI ACNGT 2 cut(s) 25, 790
TaiI ACGT 2 cut(s) 119, 592
TaqI TCGA 4 cut(s) 28, 153, 280, 725
TasI AATT 3 cut(s) 519, 761, 782
TfiI GAWTC 2 cut(s) 73, 363
Tru1I TTAA 2 cut(s) 408, 690
Tru9I TTAA 2 cut(s) 408, 690
TseI GCWGC 2 cut(s) 560, 622
TspDTI ATGAA 6 cut(s) 86, 157, 501, 612, 728, 794
TspGWI ACGGA 1 cut(s) 266
Vha464I CTTAAG 2 cut(s) 407, 689
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 782
XceI RCATGY 1 cut(s) 704
XmaJI CCTAGG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 6 cut(s) 50, 87, 144, 320, 567, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.