Rmu_sc0011044.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011044.1
OG0000336
Physical Location & Seq
Reverse (-)
45376 .. 46497
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011044.1_g000005.1.cds

Sequence Viewer

Length: 1122 bp
ctgttcaccttgacggatccaactgaccgcaaccggattcttcgcggtggtccttggggttttgacagagctccggttgtcctggcaccttatgatggagtgggagcgattaaggatgtcccgctctccaccatagccttctggatcaaggtacgtgggctgccaccggactttcataccgatcggtgcttgaggagaattggcagtgctttggggcggtttctgcagaaagatataacagagtttggagagggaaggattcggatccgggttgagatggatcttctgcagcctgtgattttccgtcgttgcttcacggtggatgatgggattgatgtagatctcgatttcttcttcgaaaatctctatggaagatgtcaagattgtggtttgcttactcatgtgggtttaccatgtgttgggccgcccttgccggcggaggtcaggagtgaacagtcgccggtacggcgaaatcttgacagggtgttgagccgtgtggatgtgtctcctcatgtgggatcaatggtgttcggagcacagctgagtccacaagttggactcgagaggtttctgccaatagctaaaccaaaagggaggaaggaaatcaagcgcaagattgttaccgatggtggtgcgggcagttctggagtcaaaaaggcacctgtgcctgagctggtggagactggtagtgacccagcttcgggtggtccacggcaggagccgattgacagtggtagttctgtggagaaggagatgctggaggccgctccgagttgtggtatgcgtcggaaacgtgtggatggagagggtagctctcccaaaaagctacgcctaagtctagcagtaggtcggaccaatttggatgttatggcaatgggattgtgtcctgtgaaacctatgcaggaagtatacaaaaaaaggccgggaaggccaaagggggcaaagaataaggcaagggagcctaaggtcgtgcatgcttcccctatgaaaaagtcaccgacaaagaagatcaagactcctaggaaagaggagaaattggtgaatggtttaccggaattcaccgtggtggcagcagttcatggttccgacccatcaaagggtaaggagccaatagttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

373

Amino Acids

40.8

Weight (kDa)

9.75

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 85, 658
AccB7I CCANNNNNTGG 2 cut(s) 419, 554
AccBSI CCGCTC 2 cut(s) 124, 767
AccI GTMKAC 1 cut(s) 909
AccII CGCG 1 cut(s) 45
AciI CCGC 8 cut(s) 28, 45, 122, 217, 425, 437, 635, 765
AclWI GGATC 7 cut(s) 11, 24, 152, 259, 272, 288, 526
AcsI RAATTY 1 cut(s) 1055
AfaI GTAC 2 cut(s) 153, 465
AfiI CCNNNNNNNGG 9 cut(s) 95, 419, 515, 554, 700, 701, 776, 1096, 1097
AflIII ACRYGT 1 cut(s) 793
AjnI CCWGG 1 cut(s) 81
AleI CACNNNNGTG 1 cut(s) 1064
AluBI AGCT 7 cut(s) 71, 541, 581, 673, 698, 813, 826
AluI AGCT 7 cut(s) 71, 541, 581, 673, 698, 813, 826
Alw21I GWGCWC 2 cut(s) 73, 538
Alw26I GTCTC 2 cut(s) 510, 674
AlwI GGATC 7 cut(s) 11, 24, 152, 259, 272, 288, 526
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 4 cut(s) 422, 762, 920, 929
ApeKI GCWGC 3 cut(s) 160, 289, 1070
ApoI RAATTY 1 cut(s) 1055
AspA2I CCTAGG 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 612
AspS9I GGNCC 4 cut(s) 50, 422, 707, 852
AsuC2I CCSGG 2 cut(s) 269, 924
AsuHPI GGTGA 3 cut(s) 987, 1051, 1051
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 3 cut(s) 50, 707, 852
AvrII CCTAGG 1 cut(s) 1019
AxyI CCTNAGG 1 cut(s) 963
BamHI GGATCC 2 cut(s) 16, 264
BanI GGYRCC 2 cut(s) 85, 658
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 2 cut(s) 73, 538
BbvI GCAGC 3 cut(s) 147, 301, 1082
BccI CCATC 6 cut(s) 89, 271, 320, 620, 794, 1099
BceAI ACGGC 3 cut(s) 477, 482, 728
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 83
BcnI CCSGG 2 cut(s) 269, 924
BcoDI GTCTC 2 cut(s) 510, 674
BfaI CTAG 2 cut(s) 839, 1020
BfmI CTRYAG 2 cut(s) 224, 287
BglI GCCNNNNNGGC 2 cut(s) 466, 928
BglII AGATCT 1 cut(s) 340
BisI GCNGC 5 cut(s) 161, 290, 425, 765, 1071
BlnI CCTAGG 1 cut(s) 1019
BlsI GCNGC 5 cut(s) 162, 291, 426, 766, 1072
Bme1390I CCNGG 3 cut(s) 83, 269, 924
Bme18I GGWCC 3 cut(s) 50, 707, 852
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 4 cut(s) 50, 422, 707, 852
BmiI GGNNCC 8 cut(s) 18, 87, 266, 660, 720, 960, 1084, 1107
BmrFI CCNGG 3 cut(s) 83, 269, 924
BmsI GCATC 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 797, 829
BpmI CTGGAG 2 cut(s) 666, 779
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 211
BpuMI CCSGG 2 cut(s) 269, 924
BsaAI YACGTR 1 cut(s) 155
BsaBI GATNNNNATC 2 cut(s) 263, 339
BsaJI CCNNGG 4 cut(s) 53, 710, 1019, 1062
BsaWI WCCGGW 4 cut(s) 33, 73, 166, 1051
Bsc4I CCNNNNNNNGG 9 cut(s) 95, 419, 515, 554, 700, 701, 776, 1096, 1097
Bse118I RCCGGY 2 cut(s) 433, 460
Bse1I ACTGG 1 cut(s) 688
Bse21I CCTNAGG 1 cut(s) 963
Bse3DI GCAATG 1 cut(s) 879
Bse8I GATNNNNATC 2 cut(s) 263, 339
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 4 cut(s) 53, 710, 1019, 1062
BseGI GGATG 5 cut(s) 121, 328, 505, 805, 868
BseJI GATNNNNATC 2 cut(s) 263, 339
BseLI CCNNNNNNNGG 9 cut(s) 95, 419, 515, 554, 700, 701, 776, 1096, 1097
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 2 cut(s) 533, 660
BseNI ACTGG 1 cut(s) 688
BseRI GAGGAG 3 cut(s) 208, 498, 1043
BseXI GCAGC 3 cut(s) 147, 301, 1082
BseYI CCCAGC 1 cut(s) 694
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 4 cut(s) 424, 764, 922, 931
BshNI GGYRCC 2 cut(s) 85, 658
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 2 cut(s) 73, 538
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 8 cut(s) 34, 74, 167, 268, 434, 461, 923, 1052
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 9 cut(s) 95, 419, 515, 554, 700, 701, 776, 1096, 1097
BsmAI GTCTC 2 cut(s) 510, 674
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 4 cut(s) 424, 764, 922, 931
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 73, 538
Bsp143I GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
BspACI CCGC 8 cut(s) 28, 45, 122, 217, 425, 437, 635, 765
BspANI GGCC 4 cut(s) 424, 764, 922, 931
BspCNI CTCAG 2 cut(s) 534, 661
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 8 cut(s) 18, 87, 266, 660, 720, 960, 1084, 1107
BspMAI CTGCAG 2 cut(s) 228, 291
BspPI GGATC 7 cut(s) 11, 24, 152, 259, 272, 288, 526
BspT104I TTCGAA 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 85, 658
BsrBI CCGCTC 2 cut(s) 124, 767
BsrDI GCAATG 1 cut(s) 879
BsrFI RCCGGY 2 cut(s) 433, 460
BsrI ACTGG 1 cut(s) 688
BssAI RCCGGY 2 cut(s) 433, 460
BssECI CCNNGG 4 cut(s) 53, 710, 1019, 1062
BssMI GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
BssNAI GTATAC 1 cut(s) 910
BssT1I CCWWGG 2 cut(s) 53, 1019
Bst1107I GTATAC 1 cut(s) 910
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 4 cut(s) 319, 456, 731, 1063
BstBAI YACGTR 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 3 cut(s) 435, 637, 975
BstDEI CTNAG 4 cut(s) 542, 669, 833, 963
BstDSI CCRYGG 2 cut(s) 710, 1062
BstF5I GGATG 5 cut(s) 121, 328, 505, 805, 868
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 612
BstKTI GATC 8 cut(s) 19, 147, 184, 267, 283, 343, 521, 1011
BstMAI GTCTC 2 cut(s) 510, 674
BstMBI GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 4 cut(s) 223, 430, 466, 928
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 3 cut(s) 81, 267, 922
BstSFI CTRYAG 2 cut(s) 224, 287
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 147, 301, 1082
BstX2I RGATCY 4 cut(s) 16, 264, 280, 340
BstYI RGATCY 4 cut(s) 16, 264, 280, 340
BstZ17I GTATAC 1 cut(s) 910
Bsu36I CCTNAGG 1 cut(s) 963
BsuRI GGCC 4 cut(s) 424, 764, 922, 931
BtgI CCRYGG 2 cut(s) 710, 1062
BtsCI GGATG 5 cut(s) 121, 328, 505, 805, 868
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 211, 736
Cac8I GCNNGC 3 cut(s) 435, 637, 975
CfoI GCGC 1 cut(s) 612
Cfr10I RCCGGY 2 cut(s) 433, 460
Cfr13I GGNCC 4 cut(s) 50, 422, 707, 852
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 152, 464
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 5 cut(s) 401, 414, 512, 974, 1079
CviQI GTAC 2 cut(s) 152, 464
DdeI CTNAG 4 cut(s) 542, 669, 833, 963
DpnI GATC 8 cut(s) 18, 146, 183, 266, 282, 342, 520, 1010
DpnII GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
EciI GGCGGA 1 cut(s) 452
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 53, 1019
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 3 cut(s) 50, 707, 852
Eco53kI GAGCTC 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 1055
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 53, 1019
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 53, 1019
FaeI CATG 5 cut(s) 404, 417, 515, 977, 1082
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 400, 413, 511, 973, 1078
FauI CCCGC 2 cut(s) 129, 628
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 5 cut(s) 161, 290, 425, 765, 1071
FokI GGATG 5 cut(s) 128, 335, 512, 812, 875
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 5 cut(s) 161, 290, 425, 765, 1071
FspBI CTAG 2 cut(s) 839, 1020
GlaI GCGC 1 cut(s) 611
GluI GCNGC 5 cut(s) 161, 290, 425, 765, 1071
GsaI CCCAGC 1 cut(s) 698
GsuI CTGGAG 2 cut(s) 666, 779
HaeIII GGCC 4 cut(s) 424, 764, 922, 931
HapII CCGG 8 cut(s) 34, 74, 167, 268, 434, 461, 923, 1052
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 612
Hin1II CATG 5 cut(s) 404, 417, 515, 977, 1082
Hin6I GCGC 1 cut(s) 610
HinP1I GCGC 1 cut(s) 610
HinfI GANTC 6 cut(s) 37, 259, 544, 558, 648, 1015
HpaII CCGG 8 cut(s) 34, 74, 167, 268, 434, 461, 923, 1052
HphI GGTGA 3 cut(s) 987, 1051, 1051
Hpy166II GTNNAC 7 cut(s) 6, 410, 452, 548, 710, 910, 1049
Hpy188I TCNGA 6 cut(s) 264, 533, 771, 789, 852, 1087
Hpy188III TCNNGA 8 cut(s) 142, 344, 380, 445, 476, 562, 645, 1012
Hpy8I GTNNAC 7 cut(s) 6, 410, 452, 548, 710, 910, 1049
Hpy99I CGWCG 2 cut(s) 309, 789
HpyAV CCTTC 5 cut(s) 148, 249, 592, 742, 921
HpyCH4III ACNGT 4 cut(s) 319, 456, 731, 1063
HpyCH4IV ACGT 2 cut(s) 154, 793
HpyCH4V TGCA 4 cut(s) 226, 289, 901, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 430, 466, 928
HpyF3I CTNAG 4 cut(s) 542, 669, 833, 963
HpySE526I ACGT 2 cut(s) 154, 793
Hsp92II CATG 5 cut(s) 404, 417, 515, 977, 1082
HspAI GCGC 1 cut(s) 610
KroI GCCGGC 1 cut(s) 433
KroNI GCCGGC 1 cut(s) 435
Kzo9I GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
LmnI GCTCC 7 cut(s) 76, 104, 533, 718, 772, 958, 1105
Lsp1109I GCAGC 3 cut(s) 147, 301, 1082
LweI GCATC 1 cut(s) 744
MaeI CTAG 2 cut(s) 839, 1020
MaeII ACGT 2 cut(s) 154, 793
MaeIII GTNAC 3 cut(s) 619, 689, 993
MalI GATC 8 cut(s) 18, 146, 183, 266, 282, 342, 520, 1010
MbiI CCGCTC 2 cut(s) 124, 767
MboI GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
MboII GAAGA 6 cut(s) 32, 275, 343, 346, 384, 1018
MflI RGATCY 4 cut(s) 16, 264, 280, 340
MhlI GDGCHC 2 cut(s) 73, 538
MluCI AATT 4 cut(s) 198, 856, 1034, 1055
MlyI GAGTC 4 cut(s) 552, 553, 657, 1009
MmeI TCCRAC 5 cut(s) 44, 535, 767, 830, 1110
MnlI CCTC 9 cut(s) 186, 244, 433, 519, 558, 588, 754, 799, 1021
MroNI GCCGGC 1 cut(s) 433
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 1064
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 8 cut(s) 34, 74, 167, 268, 434, 461, 923, 1052
MspR9I CCNGG 3 cut(s) 83, 269, 924
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 223, 430, 466, 928
NaeI GCCGGC 1 cut(s) 435
NciI CCSGG 2 cut(s) 269, 924
NdeII GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
NgoMIV GCCGGC 1 cut(s) 433
NlaIII CATG 5 cut(s) 404, 417, 515, 977, 1082
NlaIV GGNNCC 8 cut(s) 18, 87, 266, 660, 720, 960, 1084, 1107
NmuCI GTSAC 2 cut(s) 689, 993
NspI RCATGY 1 cut(s) 977
NspV TTCGAA 1 cut(s) 357
OliI CACNNNNGTG 1 cut(s) 1064
PaeI GCATGC 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 560
PdiI GCCGGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 37, 259
PflMI CCANNNNNTGG 2 cut(s) 419, 554
PkrI GCNGC 5 cut(s) 162, 291, 426, 766, 1072
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 4 cut(s) 552, 552, 656, 1009
PpsI GAGTC 4 cut(s) 552, 552, 656, 1009
Ppu21I YACGTR 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 694
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 8 cut(s) 18, 87, 266, 660, 720, 960, 1084, 1107
PspPI GGNCC 4 cut(s) 50, 422, 707, 852
PstI CTGCAG 2 cut(s) 228, 291
PsuI RGATCY 4 cut(s) 16, 264, 280, 340
PvuI CGATCG 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 2 cut(s) 153, 465
RsaNI GTAC 2 cut(s) 152, 464
RseI CAYNNNNRTG 1 cut(s) 1064
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 5 cut(s) 161, 290, 425, 765, 1071
Sau3AI GATC 8 cut(s) 16, 144, 181, 264, 280, 340, 518, 1008
Sau96I GGNCC 4 cut(s) 50, 422, 707, 852
SchI GAGTC 4 cut(s) 552, 553, 657, 1009
ScrFI CCNGG 3 cut(s) 83, 269, 924
SduI GDGCHC 2 cut(s) 73, 538
SfaNI GCATC 1 cut(s) 744
SfcI CTRYAG 2 cut(s) 224, 287
SfiI GGCCNNNNNGGCC 1 cut(s) 928
Sfr274I CTCGAG 1 cut(s) 560
SfuI TTCGAA 1 cut(s) 357
SinI GGWCC 3 cut(s) 50, 707, 852
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 2 cut(s) 190, 560
SmoI CTYRAG 2 cut(s) 190, 560
SphI GCATGC 1 cut(s) 977
Sse9I AATT 4 cut(s) 198, 856, 1034, 1055
SsiI CCGC 8 cut(s) 28, 45, 122, 217, 425, 437, 635, 765
SspMI CTAG 2 cut(s) 839, 1020
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 3 cut(s) 81, 267, 922
StyI CCWWGG 2 cut(s) 53, 1019
TaaI ACNGT 4 cut(s) 319, 456, 731, 1063
TaiI ACGT 2 cut(s) 157, 796
TaqI TCGA 3 cut(s) 345, 357, 561
TasI AATT 4 cut(s) 198, 856, 1034, 1055
TauI GCSGC 2 cut(s) 427, 767
TfiI GAWTC 2 cut(s) 37, 259
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 211, 736
TseFI GTSAC 2 cut(s) 689, 993
TseI GCWGC 3 cut(s) 160, 289, 1070
Tsp45I GTSAC 2 cut(s) 689, 993
TspDTI ATGAA 3 cut(s) 164, 1001, 1067
TspGWI ACGGA 2 cut(s) 29, 293
TspRI CASTG 2 cut(s) 211, 736
Van91I CCANNNNNTGG 2 cut(s) 419, 554
VpaK11BI GGWCC 3 cut(s) 50, 707, 852
XapI RAATTY 1 cut(s) 1055
XceI RCATGY 1 cut(s) 977
XhoI CTCGAG 1 cut(s) 560
XmaJI CCTAGG 1 cut(s) 1019
XmiI GTMKAC 1 cut(s) 909
XspI CTAG 2 cut(s) 839, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.