Rmu_ssc0000175.1_g000034

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000175.1
OG0000336
Physical Location & Seq
Forward (+)
166123 .. 167457
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000175.1_g000034.1.cds

Sequence Viewer

Length: 1098 bp
atggaggacgtcgatgagatggccgtgcgcttggctgcatccttgggactagcggatgcacgccgacagacgtaccttgtggggaaacttctgatagccagagctttcaacaagagatcttttatggggatgttccggcaagcatgggctccggtggttttggcaccatatgatggagttggaggaatcaaagatgtgccgcttactacacttgctttctggattaaggtgcatggactatcgccggattttcacacggatcactgtcttaagaggataggcagtttcgtaggttggtttgttcaaaaggacaccacagagtttgatgcaggaagaatcaggattcggggtgagttagacctattgcagcctatcatctttcggcgtagcttcacggcagatgatggtattgtggtggatttggaattctttttcgagaatttgtatggcaggtgcagggattgtggacttgtcacttatgttggcttgccgtgttctggaactcctttaccagcagagctgcaaaatgatactcctttagcacgtcgaaatctggagtgtgttttgaacctcgtggatgtgatacagccgactggaccaatgttggtttttggggcacagaaaaccccccatgttgagggtagctctagggtacagacagactcaactgggacggagcttgatggtgatagtgagccaaagtctgatggttcaggcaaggggacatttggagcaaacagttcgacagaacatgcaccgaatcatgcaatgcattctcctagttgtggaatgcgtcgtaagcatgtggatgaggatgagatttctctaaagaagatgagattgagcttggcagttggaggaaataatttggatgctatgaccatgggtttgtgcaatgtgaatccggccgagaaggtatacaagaacagaggtagggcgaaaggtacaaaaaataaagctaaggagctcaaggttgttcaagcttctcctatgaaaaagtccccatcaaagaagagtaaatctctaagaaaagcagaaaagttagtgaatggtttgccagaatttactttagttgaggttaattgtcaatggttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

365

Amino Acids

40.2

Weight (kDa)

8.92

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 441
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 173
AccI GTMKAC 1 cut(s) 918
AciI CCGC 2 cut(s) 53, 200
AclWI GGATC 1 cut(s) 267
AcoI YGGCCR 2 cut(s) 21, 906
AcsI RAATTY 3 cut(s) 425, 439, 1061
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 3 cut(s) 74, 654, 946
AfiI CCNNNNNNNGG 4 cut(s) 173, 497, 637, 785
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 109, 305, 568, 980
AjiI CACGTC 1 cut(s) 545
AluBI AGCT 9 cut(s) 104, 390, 520, 645, 679, 846, 959, 967, 983
AluI AGCT 9 cut(s) 104, 390, 520, 645, 679, 846, 959, 967, 983
Alw21I GWGCWC 1 cut(s) 969
AlwI GGATC 1 cut(s) 267
AoxI GGCC 2 cut(s) 21, 906
ApeKI GCWGC 3 cut(s) 35, 367, 520
ApoI RAATTY 3 cut(s) 425, 439, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 871, 903
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 362, 698
AvaII GGWCC 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 619
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 151, 969
BauI CACGAG 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 3 cut(s) 22, 379, 507
BccI CCATC 6 cut(s) 13, 167, 398, 677, 701, 1012
BceAI ACGGC 3 cut(s) 8, 411, 475
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BfaI CTAG 3 cut(s) 50, 648, 780
BfrI CTTAAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 441
BglII AGATCT 1 cut(s) 116
BisI GCNGC 4 cut(s) 36, 200, 368, 521
BlsI GCNGC 4 cut(s) 37, 201, 369, 522
Bme18I GGWCC 1 cut(s) 596
BmgBI CACGTC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 2 cut(s) 150, 165
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 4 cut(s) 46, 47, 316, 862
BmuI ACTGGG 1 cut(s) 678
BplI GAGNNNNNCTC 4 cut(s) 629, 661, 1006, 1038
BpmI CTGGAG 1 cut(s) 575
Bpu10I CCTNAGC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 953
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 42, 882
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 497, 637, 785
Bse1I ACTGG 2 cut(s) 598, 673
Bse3DI GCAATG 2 cut(s) 774, 901
BseDI CCNNGG 2 cut(s) 42, 882
BseGI GGATG 7 cut(s) 38, 61, 135, 583, 814, 820, 877
BseLI CCNNNNNNNGG 4 cut(s) 173, 497, 637, 785
BseMI GCAATG 2 cut(s) 774, 901
BseNI ACTGG 2 cut(s) 598, 673
BseSI GKGCMC 1 cut(s) 619
BseX3I CGGCCG 1 cut(s) 906
BseXI GCAGC 3 cut(s) 22, 379, 507
BsgI GTGCAG 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 909
BshFI GGCC 2 cut(s) 23, 908
BshNI GGYRCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 909
BsiHKAI GWGCWC 1 cut(s) 969
BsiSI CCGG 4 cut(s) 136, 152, 245, 905
BslFI GGGAC 4 cut(s) 60, 685, 736, 985
BslI CCNNNNNNNGG 4 cut(s) 173, 497, 637, 785
BsmFI GGGAC 4 cut(s) 60, 685, 736, 985
BsmI GAATGC 2 cut(s) 772, 795
BsnI GGCC 2 cut(s) 23, 908
Bsp1286I GDGCHC 3 cut(s) 151, 619, 969
Bsp143I GATC 2 cut(s) 116, 259
Bsp19I CCATGG 1 cut(s) 882
BspACI CCGC 2 cut(s) 53, 200
BspANI GGCC 2 cut(s) 23, 908
BspLI GGNNCC 2 cut(s) 150, 165
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 163
BspTI CTTAAG 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 774, 901
BsrI ACTGG 2 cut(s) 598, 673
BssECI CCNNGG 2 cut(s) 42, 882
BssMI GATC 2 cut(s) 116, 259
BssNAI GTATAC 1 cut(s) 919
BssNI GRCGYC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 572
BssT1I CCWWGG 2 cut(s) 42, 882
Bst1107I GTATAC 1 cut(s) 919
Bst2BI CACGAG 1 cut(s) 572
Bst4CI ACNGT 2 cut(s) 266, 740
Bst6I CTCTTC 1 cut(s) 1007
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 61, 141, 488
BstDEI CTNAG 2 cut(s) 960, 1025
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 7 cut(s) 38, 61, 135, 583, 814, 820, 877
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 2 cut(s) 119, 262
BstMBI GATC 2 cut(s) 116, 259
BstMCI CGRYCG 1 cut(s) 909
BstMWI GCNNNNNNNGC 1 cut(s) 799
BstNSI RCATGY 2 cut(s) 755, 806
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 22, 379, 507
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BstZ17I GTATAC 1 cut(s) 919
BstZI CGGCCG 1 cut(s) 906
BsuRI GGCC 2 cut(s) 23, 908
BtgI CCRYGG 1 cut(s) 882
BtrI CACGTC 1 cut(s) 545
BtsCI GGATG 7 cut(s) 38, 61, 135, 583, 814, 820, 877
BtsIMutI CAGTG 1 cut(s) 262
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 61, 141, 488
CfoI GCGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 596
CseI GACGC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 73, 653, 945
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 7 cut(s) 144, 233, 632, 752, 764, 803, 883
CviQI GTAC 3 cut(s) 73, 653, 945
DdeI CTNAG 2 cut(s) 960, 1025
DpnI GATC 2 cut(s) 118, 261
DpnII GATC 2 cut(s) 116, 259
EaeI YGGCCR 2 cut(s) 21, 906
EagI CGGCCG 1 cut(s) 906
Eam1104I CTCTTC 1 cut(s) 1007
EarI CTCTTC 1 cut(s) 1007
Ecl136II GAGCTC 1 cut(s) 967
EclXI CGGCCG 1 cut(s) 906
Eco130I CCWWGG 2 cut(s) 42, 882
Eco24I GRGCYC 2 cut(s) 151, 969
Eco47I GGWCC 1 cut(s) 596
Eco52I CGGCCG 1 cut(s) 906
Eco53kI GAGCTC 1 cut(s) 967
EcoICRI GAGCTC 1 cut(s) 967
EcoRI GAATTC 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 42, 882
EcoT22I ATGCAT 1 cut(s) 774
EcoT38I GRGCYC 2 cut(s) 151, 969
ErhI CCWWGG 2 cut(s) 42, 882
FaeI CATG 7 cut(s) 147, 236, 635, 755, 767, 806, 886
FaqI GGGAC 4 cut(s) 60, 685, 736, 985
FatI CATG 7 cut(s) 143, 232, 631, 751, 763, 802, 882
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 918
Fnu4HI GCNGC 4 cut(s) 36, 200, 368, 521
FokI GGATG 7 cut(s) 25, 68, 142, 590, 821, 827, 884
FriOI GRGCYC 2 cut(s) 151, 969
Fsp4HI GCNGC 4 cut(s) 36, 200, 368, 521
FspBI CTAG 3 cut(s) 50, 648, 780
GlaI GCGC 1 cut(s) 29
GluI GCNGC 4 cut(s) 36, 200, 368, 521
GsuI CTGGAG 1 cut(s) 575
HaeIII GGCC 2 cut(s) 23, 908
HapII CCGG 4 cut(s) 136, 152, 245, 905
HgaI GACGC 1 cut(s) 782
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 7 cut(s) 147, 236, 635, 755, 767, 806, 886
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 981
HinfI GANTC 6 cut(s) 186, 336, 343, 662, 760, 901
HpaII CCGG 4 cut(s) 136, 152, 245, 905
HphI GGTGA 2 cut(s) 362, 698
Hpy166II GTNNAC 2 cut(s) 467, 919
Hpy188I TCNGA 2 cut(s) 93, 706
Hpy188III TCNNGA 5 cut(s) 220, 340, 436, 498, 554
Hpy8I GTNNAC 2 cut(s) 467, 919
Hpy99I CGWCG 3 cut(s) 14, 549, 798
HpyAV CCTTC 1 cut(s) 907
HpyCH4III ACNGT 2 cut(s) 266, 740
HpyCH4IV ACGT 3 cut(s) 9, 71, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 799
HpyF3I CTNAG 2 cut(s) 960, 1025
HpySE526I ACGT 3 cut(s) 9, 71, 544
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 7 cut(s) 147, 236, 635, 755, 767, 806, 886
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 116, 259
LmnI GCTCC 4 cut(s) 154, 676, 731, 964
Lsp1109I GCAGC 3 cut(s) 22, 379, 507
LweI GCATC 4 cut(s) 46, 47, 316, 862
MaeI CTAG 3 cut(s) 50, 648, 780
MaeII ACGT 3 cut(s) 9, 71, 544
MaeIII GTNAC 1 cut(s) 472
MalI GATC 2 cut(s) 118, 261
MboI GATC 2 cut(s) 116, 259
MboII GAAGA 3 cut(s) 345, 844, 1024
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 151, 619, 969
MluCI AATT 5 cut(s) 425, 439, 865, 1061, 1081
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 2 cut(s) 160, 835
MnlI CCTC 8 cut(s) 176, 267, 581, 631, 805, 851, 923, 1069
Mph1103I ATGCAT 1 cut(s) 774
MseI TTAA 3 cut(s) 225, 270, 1080
MslI CAYNNNNRTG 1 cut(s) 807
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 4 cut(s) 136, 152, 245, 905
Mva1269I GAATGC 2 cut(s) 772, 795
MwoI GCNNNNNNNGC 1 cut(s) 799
NcoI CCATGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 169
NdeII GATC 2 cut(s) 116, 259
NlaIII CATG 7 cut(s) 147, 236, 635, 755, 767, 806, 886
NlaIV GGNNCC 2 cut(s) 150, 165
NmeAIII GCCGAG 1 cut(s) 934
NmuCI GTSAC 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 774
NspI RCATGY 2 cut(s) 755, 806
PaqCI CACCTGC 1 cut(s) 441
PctI GAATGC 2 cut(s) 772, 795
PfeI GAWTC 5 cut(s) 186, 336, 343, 760, 901
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 4 cut(s) 37, 201, 369, 522
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
Psp124BI GAGCTC 1 cut(s) 969
PspN4I GGNNCC 2 cut(s) 150, 165
PspPI GGNCC 1 cut(s) 596
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 3 cut(s) 74, 654, 946
RsaNI GTAC 3 cut(s) 73, 653, 945
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 3 cut(s) 225, 270, 1080
SatI GCNGC 4 cut(s) 36, 200, 368, 521
Sau3AI GATC 2 cut(s) 116, 259
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 1 cut(s) 656
SduI GDGCHC 3 cut(s) 151, 619, 969
SfaNI GCATC 4 cut(s) 46, 47, 316, 862
SinI GGWCC 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 2 cut(s) 269, 968
SmoI CTYRAG 2 cut(s) 269, 968
Sse9I AATT 5 cut(s) 425, 439, 865, 1061, 1081
SsiI CCGC 2 cut(s) 53, 200
SspMI CTAG 3 cut(s) 50, 648, 780
SstI GAGCTC 1 cut(s) 969
StyI CCWWGG 2 cut(s) 42, 882
TaaI ACNGT 2 cut(s) 266, 740
TaiI ACGT 3 cut(s) 12, 74, 547
TaqI TCGA 4 cut(s) 12, 435, 547, 743
TasI AATT 5 cut(s) 425, 439, 865, 1061, 1081
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 5 cut(s) 186, 336, 343, 760, 901
Tru1I TTAA 3 cut(s) 225, 270, 1080
Tru9I TTAA 3 cut(s) 225, 270, 1080
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 35, 367, 520
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 1007
TspGWI ACGGA 2 cut(s) 272, 689
TspRI CASTG 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 3 cut(s) 425, 439, 1061
XceI RCATGY 2 cut(s) 755, 806
XmiI GTMKAC 1 cut(s) 918
XspI CTAG 3 cut(s) 50, 648, 780
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.