Rh6AG127400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
19250586 .. 19250903
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG127400.1

Sequence Viewer

Length: 318 bp
ATGAGTAGAAAGCATGGGGAAGAGGATGGTGTTTCTCCAAAGAAAAGTCTGGCAATTGGTAGGACTAATTTGGATGCTACGACAATGGGGTTGTGCTATGTGAAACCTGTCAATGAAATATATAAGAAGAGGCAGGGGAGGCCGAAAGGTGCCAAGAATAATGTAAATTTAGGAACTCAAGGTGGTGCAGGCCTCACCTATGAGAAAATCTCCGGCAAAAAAGCTCAAGACTCTAAGGAAGGAGGAGAAATTGGTGAATGGATTACCAGAATTCACCATTGTGGAGGAGGTCAAGGGTTCCAACCTGTCAAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.24

Weight (kDa)

9.7

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AcsI RAATTY 2 cut(s) 166, 270
AfiI CCNNNNNNNGG 1 cut(s) 311
AleI CACNNNNGTG 1 cut(s) 279
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AoxI GGCC 2 cut(s) 140, 190
ApoI RAATTY 2 cut(s) 166, 270
AsuHPI GGTGA 3 cut(s) 187, 266, 266
BanI GGYRCC 1 cut(s) 149
BccI CCATC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 151, 299
BmsI GCATC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpuEI CTTGAG 2 cut(s) 162, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 31, 79
BseLI CCNNNNNNNGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 258, 300
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 142, 192
BshNI GGYRCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 311
BsnI GGCC 2 cut(s) 142, 192
BspANI GGCC 2 cut(s) 142, 192
BspLI GGNNCC 2 cut(s) 151, 299
BspT107I GGYRCC 1 cut(s) 149
Bst6I CTCTTC 2 cut(s) 15, 122
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 234
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 31, 79
BstMWI GCNNNNNNNGC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 142, 192
BtsCI GGATG 2 cut(s) 31, 79
Cac8I GCNNGC 1 cut(s) 190
CviAII CATG 1 cut(s) 14
CviJI RGCY 3 cut(s) 142, 192, 224
CviKI_1 RGCY 3 cut(s) 142, 192, 224
DdeI CTNAG 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 15, 122
EarI CTCTTC 2 cut(s) 15, 122
Eco147I AGGCCT 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 270
FaeI CATG 1 cut(s) 17
FaiI YATR 5 cut(s) 15, 99, 121, 123, 201
FatI CATG 1 cut(s) 13
FokI GGATG 2 cut(s) 38, 86
HaeIII GGCC 2 cut(s) 142, 192
HapII CCGG 1 cut(s) 213
Hin1II CATG 1 cut(s) 17
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 187, 266, 266
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 1 cut(s) 17
LpnPI CCDG 6 cut(s) 35, 119, 120, 174, 226, 280
LweI GCATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 32, 139
MfeI CAATTG 1 cut(s) 54
MluCI AATT 5 cut(s) 54, 67, 166, 249, 270
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 7 cut(s) 16, 123, 132, 203, 236, 278, 281
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 139
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 151, 299
OliI CACNNNNGTG 1 cut(s) 279
PceI AGGCCT 1 cut(s) 192
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 151, 299
RseI CAYNNNNRTG 1 cut(s) 279
SchI GAGTC 1 cut(s) 224
SetI ASST 7 cut(s) 109, 151, 184, 200, 226, 292, 307
SfaNI GCATC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 177, 225
SmoI CTYRAG 2 cut(s) 177, 225
Sse9I AATT 5 cut(s) 54, 67, 166, 249, 270
SseBI AGGCCT 1 cut(s) 192
StuI AGGCCT 1 cut(s) 192
TasI AATT 5 cut(s) 54, 67, 166, 249, 270
TspDTI ATGAA 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 2 cut(s) 166, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.