Rorug05G0231700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000336
Physical Location & Seq
Reverse (-)
24142988 .. 24143525
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0231700.1

Sequence Viewer

Length: 333 bp
ATGGCTTGTGAGTCTGTTGCGTTGGTTAATAGTCTCTACTTTTGTCTCAAAGCAGGTTTTCCCAATGTGATATTAGAGGGTGATGCGAAGAACGTGATTGCAGCATTGGACGCTAGGGAGGAGGACTTAAGTCATGATGGTGCACTACTTGACCAAGCAAGAAGTCTAGTTAGTAACTTTCAGTCTTGTAGTTGGGTTCATGTTCCCAGAGAATGTAATAAAGCTGCCCATTGCGTGGCTAAGGTTGCTATTGAGTTACAATATCCAACGTATTGGTGGCGAATGACGCCGTCTTGGCTCACGTCTACGATTGAGAGTGATAGCAGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.22

Weight (kDa)

4.98

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 4 - 82 8.3e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 235
AccI GTMKAC 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 235
AflII CTTAAG 1 cut(s) 127
AjiI CACGTC 1 cut(s) 303
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 38, 50
Alw44I GTGCAC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 101, 224
AsuHPI GGTGA 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 113, 211
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 38, 50
BfaI CTAG 2 cut(s) 114, 167
BfrI CTTAAG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 102, 225
BlsI GCNGC 2 cut(s) 103, 226
BmgBI CACGTC 1 cut(s) 303
BmsI GCATC 1 cut(s) 73
BoxI GACNNNNGTC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 2 cut(s) 113, 211
BsiHKAI GWGCWC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 38, 50
Bsp1286I GDGCHC 1 cut(s) 145
BspHI TCATGA 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 287
BstAFI CTTAAG 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 240
BstMAI GTCTC 2 cut(s) 38, 50
BstMWI GCNNNNNNNGC 4 cut(s) 110, 245, 286, 295
BstPAI GACNNNNGTC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 113, 211
BstXI CCANNNNNNTGG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 303
BveI ACCTGC 1 cut(s) 44
CciI TCATGA 1 cut(s) 133
CseI GACGC 2 cut(s) 119, 295
CviAII CATG 2 cut(s) 134, 200
CviJI RGCY 4 cut(s) 5, 224, 239, 298
CviKI_1 RGCY 4 cut(s) 5, 224, 239, 298
DdeI CTNAG 1 cut(s) 240
FaeI CATG 2 cut(s) 137, 203
FaiI YATR 3 cut(s) 135, 201, 329
FatI CATG 2 cut(s) 133, 199
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 102, 225
Fsp4HI GCNGC 2 cut(s) 102, 225
FspBI CTAG 2 cut(s) 114, 167
GluI GCNGC 2 cut(s) 102, 225
HgaI GACGC 2 cut(s) 119, 295
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 2 cut(s) 137, 203
HinfI GANTC 1 cut(s) 11
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 143, 306
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 143, 306
HpyCH4IV ACGT 3 cut(s) 93, 269, 302
HpyCH4V TGCA 2 cut(s) 101, 143
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 245, 286, 295
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 3 cut(s) 93, 269, 302
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 137, 203
LpnPI CCDG 2 cut(s) 39, 220
Lsp1109I GCAGC 2 cut(s) 113, 211
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 114, 167
MaeII ACGT 3 cut(s) 93, 269, 302
MaeIII GTNAC 2 cut(s) 173, 255
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 145
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 3 cut(s) 70, 112, 115
MseI TTAA 2 cut(s) 27, 128
MslI CAYNNNNRTG 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 127
MwoI GCNNNNNNNGC 4 cut(s) 110, 245, 286, 295
NlaIII CATG 2 cut(s) 137, 203
PagI TCATGA 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 2 cut(s) 103, 226
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PshAI GACNNNNGTC 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 2 cut(s) 27, 128
SatI GCNGC 2 cut(s) 102, 225
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 145
SetI ASST 6 cut(s) 58, 96, 226, 246, 272, 305
SfaNI GCATC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SspMI CTAG 2 cut(s) 114, 167
TaiI ACGT 3 cut(s) 96, 272, 305
Tru1I TTAA 2 cut(s) 27, 128
Tru9I TTAA 2 cut(s) 27, 128
TseI GCWGC 2 cut(s) 101, 224
TspDTI ATGAA 1 cut(s) 188
Tth111I GACNNNGTC 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 235
Vha464I CTTAAG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 2 cut(s) 114, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.