Rw2G040640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000336
Physical Location & Seq
Reverse (-)
66273160 .. 66277389
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040640.1

Sequence Viewer

Length: 768 bp
ATGGACCTAATGCAACCGGTAATCTTTCACCAGAGTTTTATGGTGTATGATAGAGTTAATGTCAACCTGGACTTCTTCTTCGAGAACCATTATGGCCGGTGTAGGGACTGTGGCGTTCTTACTCATGTTGCGCTGCCATGCTCTGGACCACCACTGCCGGAAGTCCTAAGAACTGAGACAACTCCTACACGGCGGAACTTGGAGCGTGTATTGAGTAAGGTGGATGTAACACCAATTGCAGGTCCATCCTTGGTGTTTGGGGTACAAGTGGTTGCCACAAGGGCGCATGGTTTAGAAAGGTTTCTACCTACTACGAAACCTAGGCCGAGGAGGGAGATACATCTCCTATCGGTGCCTGTGACAGAGGATGGGTCAGGCAGCCAGGATGCTGGCACGGAGTTACCAACAGAGGAGACCGGGAATGGAGATGAGCATAGGACTAATGGCTCTGATCCGGTTATACTTAATGAGGCTGGTGGACCAATAGAACAAGCACCGGTGGCTATAGCAATCATTCCTAGCTATAAAATGCGCAAAAGGAGAATAGAGGATGTTGGGGAGGTTTCAAAGAAATGGGGTCGGCCAAAGGGTGCTGCAAAAAACAAGCCTAAGGAAATTAAAGTTATTCAAACATCGCCCGTGAAAAGGTCACCAGCGAAGCAAGTCAAAGCTCCAAGGCAAGTGGAAAAATTAATTAATGGGTTGCTAGAATTCACTATCTCTGATGCTGCAGATAGCTCAAACCCTCAAAGTGTAAGGAGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.07

Weight (kDa)

9.15

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 143
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 446
AcoI YGGCCR 2 cut(s) 94, 581
AcsI RAATTY 1 cut(s) 710
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 4 cut(s) 103, 143, 239, 645
AgeI ACCGGT 2 cut(s) 16, 496
AgsI TTSAA 2 cut(s) 567, 629
AjnI CCWGG 2 cut(s) 66, 381
AluBI AGCT 4 cut(s) 522, 671, 738, 762
AluI AGCT 4 cut(s) 522, 671, 738, 762
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 2 cut(s) 170, 407
AlwI GGATC 1 cut(s) 446
AoxI GGCC 3 cut(s) 94, 323, 581
ApeKI GCWGC 4 cut(s) 133, 378, 593, 728
ApoI RAATTY 1 cut(s) 710
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AseI ATTAAT 2 cut(s) 692, 696
AsiGI ACCGGT 2 cut(s) 16, 496
Asp700I GAANNNNTTC 1 cut(s) 300
AspA2I CCTAGG 1 cut(s) 320
AspLEI GCGC 3 cut(s) 133, 286, 534
AspS9I GGNCC 4 cut(s) 4, 146, 242, 479
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 20, 642
AvaII GGWCC 4 cut(s) 4, 146, 242, 479
AvrII CCTAGG 1 cut(s) 320
AxyI CCTNAGG 1 cut(s) 609
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 764
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 4 cut(s) 120, 390, 580, 715
BccI CCATC 2 cut(s) 253, 362
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 68, 383
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 170, 407
BfaI CTAG 3 cut(s) 321, 519, 707
BfmI CTRYAG 2 cut(s) 504, 729
BfuAI ACCTGC 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 4 cut(s) 134, 379, 594, 729
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 135, 380, 595, 730
Bme1390I CCNGG 3 cut(s) 68, 383, 418
Bme18I GGWCC 4 cut(s) 4, 146, 242, 479
BmgT120I GGNCC 4 cut(s) 4, 146, 242, 479
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 3 cut(s) 68, 383, 418
BmsI GCATC 2 cut(s) 376, 715
BpuMI CCSGG 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 4 cut(s) 249, 320, 326, 674
BsaWI WCCGGW 3 cut(s) 16, 454, 496
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 143, 239, 645
Bse118I RCCGGY 3 cut(s) 16, 96, 496
Bse21I CCTNAGG 1 cut(s) 609
BseBI CCWGG 2 cut(s) 68, 383
BseDI CCNNGG 4 cut(s) 249, 320, 326, 674
BseGI GGATG 5 cut(s) 229, 245, 373, 391, 556
BseLI CCNNNNNNNGG 4 cut(s) 103, 143, 239, 645
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 2 cut(s) 343, 425
BseXI GCAGC 4 cut(s) 120, 390, 580, 715
BshFI GGCC 3 cut(s) 96, 325, 583
BshNI GGYRCC 1 cut(s) 352
BshTI ACCGGT 2 cut(s) 16, 496
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 6 cut(s) 17, 97, 158, 417, 455, 497
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 4 cut(s) 103, 143, 239, 645
BsmAI GTCTC 2 cut(s) 170, 407
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 3 cut(s) 96, 325, 583
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 1 cut(s) 451
BspACI CCGC 1 cut(s) 193
BspANI GGCC 3 cut(s) 96, 325, 583
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 407
BsrFI RCCGGY 3 cut(s) 16, 96, 496
BssAI RCCGGY 3 cut(s) 16, 96, 496
BssECI CCNNGG 4 cut(s) 249, 320, 326, 674
BssMI GATC 1 cut(s) 451
BssT1I CCWWGG 3 cut(s) 249, 320, 674
Bst2UI CCWGG 2 cut(s) 68, 383
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 167, 174, 609
BstEII GGTNACC 1 cut(s) 648
BstF5I GGATG 5 cut(s) 229, 245, 373, 391, 556
BstHHI GCGC 3 cut(s) 133, 286, 534
BstKTI GATC 1 cut(s) 454
BstMAI GTCTC 2 cut(s) 170, 407
BstMBI GATC 1 cut(s) 451
BstMWI GCNNNNNNNGC 2 cut(s) 281, 500
BstNI CCWGG 2 cut(s) 68, 383
BstPI GGTNACC 1 cut(s) 648
BstSCI CCNGG 3 cut(s) 66, 381, 416
BstSFI CTRYAG 2 cut(s) 504, 729
BstV1I GCAGC 4 cut(s) 120, 390, 580, 715
BstXI CCANNNNNNTGG 1 cut(s) 389
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 3 cut(s) 96, 325, 583
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 5 cut(s) 229, 245, 373, 391, 556
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 152
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 3 cut(s) 133, 286, 534
Cfr10I RCCGGY 3 cut(s) 16, 96, 496
Cfr13I GGNCC 4 cut(s) 4, 146, 242, 479
Csp6I GTAC 1 cut(s) 263
CspAI ACCGGT 2 cut(s) 16, 496
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 3 cut(s) 125, 138, 287
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 3 cut(s) 167, 174, 609
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
EaeI YGGCCR 2 cut(s) 94, 581
EciI GGCGGA 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 762
Eco130I CCWWGG 3 cut(s) 249, 320, 674
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 4 cut(s) 4, 146, 242, 479
Eco53kI GAGCTC 1 cut(s) 762
Eco81I CCTNAGG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 762
EcoO65I GGTNACC 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 710
EcoRII CCWGG 2 cut(s) 66, 381
EcoT14I CCWWGG 3 cut(s) 249, 320, 674
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 3 cut(s) 249, 320, 674
FaeI CATG 3 cut(s) 128, 141, 290
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 124, 137, 286
Fnu4HI GCNGC 4 cut(s) 134, 379, 594, 729
FokI GGATG 5 cut(s) 232, 236, 380, 398, 563
FriOI GRGCYC 1 cut(s) 764
Fsp4HI GCNGC 4 cut(s) 134, 379, 594, 729
FspBI CTAG 3 cut(s) 321, 519, 707
FspI TGCGCA 1 cut(s) 533
GlaI GCGC 3 cut(s) 132, 285, 533
GluI GCNGC 4 cut(s) 134, 379, 594, 729
HaeIII GGCC 3 cut(s) 96, 325, 583
HapII CCGG 6 cut(s) 17, 97, 158, 417, 455, 497
HhaI GCGC 3 cut(s) 133, 286, 534
Hin1II CATG 3 cut(s) 128, 141, 290
Hin6I GCGC 3 cut(s) 131, 284, 532
HinP1I GCGC 3 cut(s) 131, 284, 532
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HpaII CCGG 6 cut(s) 17, 97, 158, 417, 455, 497
HphI GGTGA 2 cut(s) 20, 642
Hpy166II GTNNAC 2 cut(s) 64, 479
Hpy188I TCNGA 2 cut(s) 451, 724
Hpy188III TCNNGA 2 cut(s) 82, 144
Hpy8I GTNNAC 2 cut(s) 64, 479
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 13, 239, 596, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 500
HpyF3I CTNAG 3 cut(s) 167, 174, 609
Hsp92II CATG 3 cut(s) 128, 141, 290
HspAI GCGC 3 cut(s) 131, 284, 532
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 3 cut(s) 202, 676, 759
Lsp1109I GCAGC 4 cut(s) 120, 390, 580, 715
LweI GCATC 2 cut(s) 376, 715
MaeI CTAG 3 cut(s) 321, 519, 707
MaeIII GTNAC 4 cut(s) 226, 358, 399, 648
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 2 cut(s) 67, 70
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 5 cut(s) 234, 615, 689, 693, 710
MnlI CCTC 8 cut(s) 321, 324, 358, 403, 463, 541, 553, 756
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 5 cut(s) 57, 465, 618, 692, 696
MspI CCGG 6 cut(s) 17, 97, 158, 417, 455, 497
MspR9I CCNGG 3 cut(s) 68, 383, 418
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 2 cut(s) 68, 383
MwoI GCNNNNNNNGC 2 cut(s) 281, 500
NciI CCSGG 1 cut(s) 418
NdeII GATC 1 cut(s) 451
NlaIII CATG 3 cut(s) 128, 141, 290
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 358, 648
NsbI TGCGCA 1 cut(s) 533
PacI TTAATTAA 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 300
PflMI CCANNNNNTGG 1 cut(s) 143
PinAI ACCGGT 2 cut(s) 16, 496
PkrI GCNGC 4 cut(s) 135, 380, 595, 730
PshBI ATTAAT 2 cut(s) 692, 696
Psp124BI GAGCTC 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 66, 381
PspEI GGTNACC 1 cut(s) 648
PspGI CCWGG 2 cut(s) 66, 381
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 4 cut(s) 4, 146, 242, 479
PstI CTGCAG 1 cut(s) 733
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacI GAGCTC 1 cut(s) 764
SaqAI TTAA 5 cut(s) 57, 465, 618, 692, 696
SatI GCNGC 4 cut(s) 134, 379, 594, 729
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 4 cut(s) 4, 146, 242, 479
ScrFI CCNGG 3 cut(s) 68, 383, 418
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 2 cut(s) 376, 715
SfcI CTRYAG 2 cut(s) 504, 729
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 4 cut(s) 4, 146, 242, 479
Sse9I AATT 5 cut(s) 234, 615, 689, 693, 710
SsiI CCGC 1 cut(s) 193
SspMI CTAG 3 cut(s) 321, 519, 707
SstI GAGCTC 1 cut(s) 764
StyD4I CCNGG 3 cut(s) 66, 381, 416
StyI CCWWGG 3 cut(s) 249, 320, 674
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 81
TasI AATT 5 cut(s) 234, 615, 689, 693, 710
Tru1I TTAA 5 cut(s) 57, 465, 618, 692, 696
Tru9I TTAA 5 cut(s) 57, 465, 618, 692, 696
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 2 cut(s) 358, 648
TseI GCWGC 4 cut(s) 133, 378, 593, 728
Tsp45I GTSAC 2 cut(s) 358, 648
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 143
VpaK11BI GGWCC 4 cut(s) 4, 146, 242, 479
VspI ATTAAT 2 cut(s) 692, 696
XapI RAATTY 1 cut(s) 710
XmaJI CCTAGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 321, 519, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.