RLG00000034445

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000336
Physical Location & Seq
Forward (+)
42815624 .. 42816697
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034445

Sequence Viewer

Length: 345 bp
ATGGACAGGGAGTGGATTCAGTGGGGTTTAGATCCAAATTATCGGTTTACTAATGCATTTAAAGAAGGGGTTAACTCTTTTCTTGAGGTAGGTGGAGATGGGAATGGGGGTCTGAATCTGTTTATCCCGGCCTCGCCTCTAAAGGCCCGTGCTCGGAGGTCGCTTCAACCCAAACCAGGAAGGGAGGGCTCTTCTCGTAGCAAGTTGGTACCTGAGGTGATGGTCAGGAGGTGCGGGGTTCCGAGCACCCGGAGAGTGAAGTCAAGGCTAACGCTGATGGTCTGGAGGACAATGAGGATGGCGAGACTACCGAACCTTCATCTAGTGAACTGGTTGTGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.12

Weight (kDa)

11.58

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 338
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 153, 176
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 175
Alw21I GWGCWC 2 cut(s) 154, 248
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 26
AoxI GGCC 3 cut(s) 129, 144, 338
Asp718I GGTACC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 2 cut(s) 128, 250
AsuHPI GGTGA 1 cut(s) 229
AxyI CCTNAGG 1 cut(s) 213
BalI TGGCCA 1 cut(s) 340
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 191
Bbv12I GWGCWC 2 cut(s) 154, 248
BccI CCATC 4 cut(s) 92, 214, 271, 292
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 2 cut(s) 128, 250
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 1 cut(s) 323
Bme1390I CCNGG 3 cut(s) 128, 177, 250
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 210, 240
BmrFI CCNGG 3 cut(s) 128, 177, 250
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 128, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 176
Bse1I ACTGG 1 cut(s) 335
Bse21I CCTNAGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 153, 176
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 335
BshFI GGCC 3 cut(s) 131, 146, 340
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 154, 248
BsiSI CCGG 2 cut(s) 128, 250
BslI CCNNNNNNNGG 2 cut(s) 153, 176
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 3 cut(s) 131, 146, 340
Bsp1286I GDGCHC 3 cut(s) 154, 191, 248
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 234
BspANI GGCC 3 cut(s) 131, 146, 340
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 210, 240
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 335
BssMI GATC 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 126, 175, 248
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 3 cut(s) 131, 146, 340
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 209
CviAII CATG 1 cut(s) 342
CviJI RGCY 5 cut(s) 131, 146, 189, 268, 340
CviKI_1 RGCY 5 cut(s) 131, 146, 189, 268, 340
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraI TTTAAA 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 1 cut(s) 345
FaiI YATR 1 cut(s) 343
FatI CATG 1 cut(s) 341
FauI CCCGC 1 cut(s) 227
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 191
FspBI CTAG 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 3 cut(s) 131, 146, 340
HapII CCGG 2 cut(s) 128, 250
Hin1II CATG 1 cut(s) 345
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 2 cut(s) 16, 115
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 128, 250
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 48, 73, 328
Hpy188I TCNGA 3 cut(s) 114, 156, 243
Hpy188III TCNNGA 3 cut(s) 83, 226, 283
Hpy8I GTNNAC 3 cut(s) 48, 73, 328
HpyAV CCTTC 3 cut(s) 59, 174, 326
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 345
KpnI GGTACC 1 cut(s) 212
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 196
LpnPI CCDG 8 cut(s) 141, 162, 189, 211, 225, 263, 268, 316
MaeI CTAG 1 cut(s) 323
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 3 cut(s) 154, 191, 248
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 1 cut(s) 37
MluNI TGGCCA 1 cut(s) 340
MnlI CCTC 9 cut(s) 79, 142, 147, 150, 178, 208, 222, 279, 288
Mox20I TGGCCA 1 cut(s) 340
Mph1103I ATGCAT 1 cut(s) 58
MscI TGGCCA 1 cut(s) 340
MseI TTAA 2 cut(s) 60, 72
Msp20I TGGCCA 1 cut(s) 340
MspI CCGG 2 cut(s) 128, 250
MspR9I CCNGG 3 cut(s) 128, 177, 250
MvaI CCWGG 1 cut(s) 177
NciI CCSGG 2 cut(s) 128, 250
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 2 cut(s) 210, 240
NsiI ATGCAT 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 16, 115
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 210, 240
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 60, 72
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 3 cut(s) 128, 177, 250
SduI GDGCHC 3 cut(s) 154, 191, 248
SetI ASST 7 cut(s) 90, 94, 161, 214, 219, 233, 318
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 1 cut(s) 37
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 126, 175, 248
TasI AATT 1 cut(s) 37
TfiI GAWTC 2 cut(s) 16, 115
Tru1I TTAA 2 cut(s) 60, 72
Tru9I TTAA 2 cut(s) 60, 72
TscAI CASTG 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 26
XspI CTAG 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.