RLG00000009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000336
Physical Location & Seq
Forward (+)
56598580 .. 56599896
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009700

Sequence Viewer

Length: 474 bp
ATGAGGGAGTTAGCTGCTAGTCATGTTCACGTCAAGGTGGAGTCTGATCTCACCCAACCTATAATCTTTCAACGCAACTTTATAGTTGTAGATGGGATCGTCTTGCATCTTGATTTTCTCTTCGAGAATTTGGTTGGGCGCTTTACCTCACCTCTGCCAGCCCGCCGCCACAGAACATCCGAAGAAGGTGCCGTGCAGGCGTGCAGCCCCAAATTTGAACTGCATTCGAAATCCGACCTCGAGCTCGCCGCCGCCCATCATGGTCACTGTCTTCATTCTGTAGCTCGACCTCAAGCTCACCATTCTCTAAAAGACCCGAAGTCGGCGTCGTGGGTTCAAACAAGACAACCCTTCCCCTCCACGCTGGAGTTCAACTTCGATTTGCTGGAATTCATGTTCTCCCGGACCCAGTTCCGGTCTTCTCAGCTCGGGTTTTGGGCGTCCAAGACCAACCCGACCACTACTGCAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.76

Weight (kDa)

7.95

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 4 cut(s) 163, 166, 249, 252
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 3 cut(s) 127, 212, 389
AcyI GRCGYC 2 cut(s) 326, 440
AfiI CCNNNNNNNGG 2 cut(s) 322, 414
AgsI TTSAA 4 cut(s) 71, 218, 338, 373
AhdI GACNNNNNGTC 1 cut(s) 319
AjiI CACGTC 1 cut(s) 31
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 5 cut(s) 14, 244, 284, 296, 427
AluI AGCT 5 cut(s) 14, 244, 284, 296, 427
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 2 cut(s) 239, 428
ApeKI GCWGC 3 cut(s) 14, 204, 467
ApoI RAATTY 3 cut(s) 127, 212, 389
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 43, 141, 290
AsuII TTCGAA 1 cut(s) 227
AvaI CYCGRG 2 cut(s) 239, 428
AvaII GGWCC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 263, 411
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 86, 264
BceAI ACGGC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BcnI CCSGG 1 cut(s) 403
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 279, 465
BfoI RGCGCY 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 6 cut(s) 15, 166, 205, 249, 252, 468
BlsI GCNGC 6 cut(s) 16, 167, 206, 250, 253, 469
Bme1390I CCNGG 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 405
BmeRI GACNNNNNGTC 1 cut(s) 319
BmeT110I CYCGRG 2 cut(s) 239, 428
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 190, 407
BmrFI CCNGG 1 cut(s) 403
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 403
BpiI GAAGAC 2 cut(s) 263, 411
BpmI CTGGAG 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 403
BsaHI GRCGYC 2 cut(s) 326, 440
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 414
Bse1I ACTGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 322, 414
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 409
BseXI GCAGC 1 cut(s) 216
BsgI GTGCAG 2 cut(s) 215, 223
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 2 cut(s) 239, 428
BsiSI CCGG 2 cut(s) 403, 415
BslI CCNNNNNNNGG 2 cut(s) 322, 414
BsmI GAATGC 1 cut(s) 223
BsoBI CYCGRG 2 cut(s) 239, 428
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 46, 96
BspACI CCGC 4 cut(s) 163, 166, 249, 252
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 190, 407
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 409
BssMI GATC 2 cut(s) 46, 96
BssNI GRCGYC 2 cut(s) 326, 440
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 326, 440
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 5 cut(s) 159, 163, 198, 202, 246
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 2 cut(s) 49, 99
BstMBI GATC 2 cut(s) 46, 96
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 401
BstSFI CTRYAG 2 cut(s) 279, 465
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 2 cut(s) 263, 411
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 5 cut(s) 159, 163, 198, 202, 246
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 405
CseI GACGC 2 cut(s) 315, 429
CviAII CATG 3 cut(s) 23, 260, 394
CviJI RGCY 7 cut(s) 14, 161, 207, 244, 284, 296, 427
CviKI_1 RGCY 7 cut(s) 14, 161, 207, 244, 284, 296, 427
DdeI CTNAG 1 cut(s) 423
DpnI GATC 2 cut(s) 48, 98
DpnII GATC 2 cut(s) 46, 96
DriI GACNNNNNGTC 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 244
Eco88I CYCGRG 2 cut(s) 239, 428
EcoICRI GAGCTC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 3 cut(s) 26, 263, 397
FaiI YATR 5 cut(s) 24, 62, 83, 261, 395
FatI CATG 3 cut(s) 22, 259, 393
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 6 cut(s) 15, 166, 205, 249, 252, 468
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 6 cut(s) 15, 166, 205, 249, 252, 468
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 140
GluI GCNGC 6 cut(s) 15, 166, 205, 249, 252, 468
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 142
HapII CCGG 2 cut(s) 403, 415
HgaI GACGC 2 cut(s) 315, 429
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 326, 440
Hin1II CATG 3 cut(s) 26, 263, 397
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 403, 415
HphI GGTGA 3 cut(s) 43, 141, 290
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 46, 181, 235
Hpy188III TCNNGA 2 cut(s) 110, 124
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 179, 361
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 106, 196, 204, 223, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 2 cut(s) 326, 440
Hsp92II CATG 3 cut(s) 26, 263, 397
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 2 cut(s) 46, 96
LpnPI CCDG 7 cut(s) 171, 182, 350, 371, 416, 422, 428
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 263
MalI GATC 2 cut(s) 48, 98
MboI GATC 2 cut(s) 46, 96
MboII GAAGA 4 cut(s) 112, 194, 263, 411
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 3 cut(s) 127, 212, 389
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 5 cut(s) 157, 162, 248, 300, 367
MspI CCGG 2 cut(s) 403, 415
MspR9I CCNGG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 403
NdeII GATC 2 cut(s) 46, 96
NlaIII CATG 3 cut(s) 26, 263, 397
NlaIV GGNNCC 2 cut(s) 190, 407
NmuCI GTSAC 1 cut(s) 263
NspV TTCGAA 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 239
PctI GAATGC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 401
PkrI GCNGC 6 cut(s) 16, 167, 206, 250, 253, 469
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 190, 407
PspPI GGNCC 1 cut(s) 405
PspXI VCTCGAGB 1 cut(s) 239
PstI CTGCAG 1 cut(s) 469
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 6 cut(s) 15, 166, 205, 249, 252, 468
Sau3AI GATC 2 cut(s) 46, 96
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 2 cut(s) 279, 465
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 1 cut(s) 405
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 239, 291
SmoI CTYRAG 2 cut(s) 239, 291
Sse9I AATT 3 cut(s) 127, 212, 389
SsiI CCGC 4 cut(s) 163, 166, 249, 252
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 401
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 33
TaqI TCGA 5 cut(s) 123, 227, 240, 286, 378
TasI AATT 3 cut(s) 127, 212, 389
TauI GCSGC 3 cut(s) 168, 251, 254
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 3 cut(s) 14, 204, 467
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 263, 382
TspRI CASTG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 3 cut(s) 127, 212, 389
XhoI CTCGAG 1 cut(s) 239
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.