Rh2AG098000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000336
Physical Location & Seq
Forward (+)
8325405 .. 8327261
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG098000.1

Sequence Viewer

Length: 207 bp
ATGCTAGTCTTGACTCCAAAGGCTCGAGTGCAGAGGGCACTACAACCTCGACCATCAGGGGAGGTTACTTCTAGTACTAAAGATGTAGCTGAGGATGATGGTCATGAGGGTCATGTGACAGTGGAATCGGCGAGGGAAGGAAAGGTTTTGGGTGCCCACTATTTGATTCGAAAGTTTGCTTCTTCTGAGGAATTTGTATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.48

Weight (kDa)

5.86

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 76
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 24
ApoI RAATTY 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 24
BaeGI GKGCMC 2 cut(s) 40, 157
BanI GGYRCC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 61, 92
BfaI CTAG 2 cut(s) 5, 72
BmcAI AGTACT 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 169
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 81, 177
BseSI GKGCMC 2 cut(s) 40, 157
BsgI GTGCAG 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 40, 157
BspCNI CTCAG 2 cut(s) 82, 178
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 90, 186
BstF5I GGATG 1 cut(s) 100
BstSLI GKGCMC 2 cut(s) 40, 157
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 126
CciI TCATGA 1 cut(s) 103
Csp6I GTAC 1 cut(s) 75
CviAII CATG 2 cut(s) 104, 113
CviJI RGCY 2 cut(s) 23, 89
CviKI_1 RGCY 2 cut(s) 23, 89
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 2 cut(s) 90, 186
Eco88I CYCGRG 1 cut(s) 24
FaeI CATG 2 cut(s) 107, 116
FaiI YATR 2 cut(s) 105, 114
FatI CATG 2 cut(s) 103, 112
FokI GGATG 1 cut(s) 107
FspBI CTAG 2 cut(s) 5, 72
Hin1II CATG 2 cut(s) 107, 116
HinfI GANTC 3 cut(s) 13, 125, 166
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 10, 104
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 90, 186
Hsp92II CATG 2 cut(s) 107, 116
LpnPI CCDG 1 cut(s) 42
MaeI CTAG 2 cut(s) 5, 72
MaeIII GTNAC 2 cut(s) 64, 115
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 40, 157
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 7 cut(s) 27, 55, 57, 85, 100, 126, 181
NlaIII CATG 2 cut(s) 107, 116
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 115
NspV TTCGAA 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 24
PagI TCATGA 1 cut(s) 103
PfeI GAWTC 2 cut(s) 125, 166
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 24
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 7
SduI GDGCHC 2 cut(s) 40, 157
SetI ASST 4 cut(s) 49, 66, 91, 147
Sfr274I CTCGAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 191
SspMI CTAG 2 cut(s) 5, 72
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 25, 49, 169
TasI AATT 1 cut(s) 191
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 2 cut(s) 125, 166
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspRI CASTG 1 cut(s) 126
XapI RAATTY 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 24
XspI CTAG 2 cut(s) 5, 72
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.