Rmu_sc0003158.1_g000016

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003158.1
OG0000336
Physical Location & Seq
Forward (+)
71751 .. 72503
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003158.1_g000016.1.cds

Sequence Viewer

Length: 633 bp
atggaggaggtggatgagatggctgtccgactggctgcctctcttggactggcagatgtgcgtaggccggtggatctgaggccggctcgtggcgaaggtttgcggcgttcgcagacgtatctggtggggaagctgctgacggctagggcttttaacaaaagatcgttcatgggcatgttccgtcgtgcatggagattgaatggacggtacactgctcaggaacatggagaccgatttctgttcaccttgacggatccaactgaccgcaaccggattcttcgcggtggtccttggggttttgacagagctccggttgtcctggcaccttatgatggagtgggagcgattaaggatgtcccgctctccaccatagccttctggatcaaggtacgtgggctgccaccggactttcataccgatcggtgcttgaggagaattggcagtgctttggggcggtttctgcagaaagatataacagagtttggagagggaaggattcggatccgggttgagatggatcttctgcagcctgtgattttccgtcgttgcttcacggtggatgatgggattgatgccacaagcccagaagcagatgttttacttgcttatgagatgaatggagaggaaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

210

Amino Acids

23.84

Weight (kDa)

9.33

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 361
AccII CGCG 1 cut(s) 282
AciI CCGC 5 cut(s) 103, 265, 282, 359, 454
AclWI GGATC 7 cut(s) 81, 248, 261, 389, 496, 509, 525
AfaI GTAC 2 cut(s) 209, 390
AfiI CCNNNNNNNGG 2 cut(s) 89, 332
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 2 cut(s) 133, 308
AluI AGCT 2 cut(s) 133, 308
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 7 cut(s) 81, 248, 261, 389, 496, 509, 525
AoxI GGCC 2 cut(s) 65, 80
ApeKI GCWGC 4 cut(s) 35, 133, 397, 526
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 287
BamHI GGATCC 2 cut(s) 253, 501
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 310
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 4 cut(s) 22, 120, 384, 538
BccI CCATC 4 cut(s) 13, 326, 508, 557
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 461, 524
BisI GCNGC 5 cut(s) 36, 104, 134, 398, 527
BlsI GCNGC 5 cut(s) 37, 105, 135, 399, 528
Bme1390I CCNGG 2 cut(s) 320, 506
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 3 cut(s) 255, 324, 503
BmrFI CCNGG 2 cut(s) 320, 506
BmsI GCATC 1 cut(s) 562
BplI GAGNNNNNCTC 2 cut(s) 70, 102
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 506
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 3 cut(s) 270, 310, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 332
Bse118I RCCGGY 2 cut(s) 67, 82
Bse1I ACTGG 2 cut(s) 36, 54
Bse8I GATNNNNATC 1 cut(s) 500
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 3 cut(s) 19, 358, 565
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 89, 332
BseMII CTCAG 2 cut(s) 68, 230
BseNI ACTGG 2 cut(s) 36, 54
BseRI GAGGAG 2 cut(s) 20, 445
BseXI GCAGC 4 cut(s) 22, 120, 384, 538
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 2 cut(s) 67, 82
BshNI GGYRCC 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 6 cut(s) 68, 83, 271, 311, 404, 505
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 89, 332
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 2 cut(s) 67, 82
Bso31I GGTCTC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
BspACI CCGC 5 cut(s) 103, 265, 282, 359, 454
BspANI GGCC 2 cut(s) 67, 82
BspCNI CTCAG 2 cut(s) 69, 229
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 3 cut(s) 255, 324, 503
BspMAI CTGCAG 2 cut(s) 465, 528
BspPI GGATC 7 cut(s) 81, 248, 261, 389, 496, 509, 525
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 67, 82
BsrI ACTGG 2 cut(s) 36, 54
BssAI RCCGGY 2 cut(s) 67, 82
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 290
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 207, 556
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 77, 216
BstF5I GGATG 3 cut(s) 19, 358, 565
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 7 cut(s) 76, 164, 256, 384, 421, 504, 520
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 2 cut(s) 109, 460
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 318, 504
BstSFI CTRYAG 2 cut(s) 461, 524
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 4 cut(s) 22, 120, 384, 538
BstX2I RGATCY 4 cut(s) 73, 253, 501, 517
BstYI RGATCY 4 cut(s) 73, 253, 501, 517
BsuRI GGCC 2 cut(s) 67, 82
BtsCI GGATG 3 cut(s) 19, 358, 565
BtsI GCAGTG 2 cut(s) 210, 448
BtsIMutI CAGTG 2 cut(s) 210, 448
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 2 cut(s) 67, 82
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 208, 389
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 4 cut(s) 169, 175, 189, 224
CviQI GTAC 2 cut(s) 208, 389
DdeI CTNAG 2 cut(s) 77, 216
DpnI GATC 7 cut(s) 75, 163, 255, 383, 420, 503, 519
DpnII GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 4 cut(s) 172, 178, 192, 227
FaiI YATR 9 cut(s) 170, 176, 190, 225, 330, 371, 414, 473, 609
FaqI GGGAC 1 cut(s) 341
FatI CATG 4 cut(s) 168, 174, 188, 223
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 5 cut(s) 36, 104, 134, 398, 527
FokI GGATG 3 cut(s) 26, 365, 572
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 5 cut(s) 36, 104, 134, 398, 527
FspBI CTAG 1 cut(s) 144
GluI GCNGC 5 cut(s) 36, 104, 134, 398, 527
HaeIII GGCC 2 cut(s) 67, 82
HapII CCGG 6 cut(s) 68, 83, 271, 311, 404, 505
Hin1II CATG 4 cut(s) 172, 178, 192, 227
HinfI GANTC 2 cut(s) 274, 496
HpaII CCGG 6 cut(s) 68, 83, 271, 311, 404, 505
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 210, 243
Hpy188I TCNGA 3 cut(s) 29, 78, 501
Hpy188III TCNNGA 2 cut(s) 218, 379
Hpy8I GTNNAC 2 cut(s) 210, 243
Hpy99I CGWCG 2 cut(s) 186, 546
HpyAV CCTTC 3 cut(s) 89, 385, 486
HpyCH4III ACNGT 2 cut(s) 207, 556
HpyCH4IV ACGT 2 cut(s) 116, 391
HpyCH4V TGCA 3 cut(s) 188, 463, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 460
HpyF3I CTNAG 2 cut(s) 77, 216
HpySE526I ACGT 2 cut(s) 116, 391
Hsp92II CATG 4 cut(s) 172, 178, 192, 227
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Kzo9I GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
LmnI GCTCC 2 cut(s) 313, 341
Lsp1109I GCAGC 4 cut(s) 22, 120, 384, 538
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 144
MaeII ACGT 2 cut(s) 116, 391
MalI GATC 7 cut(s) 75, 163, 255, 383, 420, 503, 519
MbiI CCGCTC 1 cut(s) 361
MboI GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
MboII GAAGA 2 cut(s) 269, 512
MflI RGATCY 4 cut(s) 73, 253, 501, 517
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 52, 281
MnlI CCTC 5 cut(s) 49, 72, 423, 481, 616
MroNI GCCGGC 1 cut(s) 82
MseI TTAA 2 cut(s) 153, 348
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 6 cut(s) 68, 83, 271, 311, 404, 505
MspR9I CCNGG 2 cut(s) 320, 506
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 109, 460
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 506
NdeII GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 4 cut(s) 172, 178, 192, 227
NlaIV GGNNCC 3 cut(s) 255, 324, 503
NspI RCATGY 1 cut(s) 178
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 2 cut(s) 274, 496
PkrI GCNGC 5 cut(s) 37, 105, 135, 399, 528
Ple19I CGATCG 1 cut(s) 421
Ppu21I YACGTR 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 255, 324, 503
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 2 cut(s) 465, 528
PsuI RGATCY 4 cut(s) 73, 253, 501, 517
PvuI CGATCG 1 cut(s) 421
RsaI GTAC 2 cut(s) 209, 390
RsaNI GTAC 2 cut(s) 208, 389
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 153, 348
SatI GCNGC 5 cut(s) 36, 104, 134, 398, 527
Sau3AI GATC 7 cut(s) 73, 161, 253, 381, 418, 501, 517
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 320, 506
SduI GDGCHC 1 cut(s) 310
SetI ASST 9 cut(s) 12, 100, 119, 135, 248, 310, 328, 390, 394
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 2 cut(s) 461, 524
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 1 cut(s) 435
SsiI CCGC 5 cut(s) 103, 265, 282, 359, 454
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 318, 504
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 207, 556
TaiI ACGT 2 cut(s) 119, 394
TaqII GACCGA 1 cut(s) 246
TasI AATT 1 cut(s) 435
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 274, 496
Tru1I TTAA 2 cut(s) 153, 348
Tru9I TTAA 2 cut(s) 153, 348
TscAI CASTG 2 cut(s) 217, 448
TseI GCWGC 4 cut(s) 35, 133, 397, 526
TspDTI ATGAA 3 cut(s) 157, 401, 629
TspGWI ACGGA 3 cut(s) 170, 266, 530
TspRI CASTG 2 cut(s) 217, 448
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.