Rroxscaffold_4G00288290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000336
Physical Location & Seq
Reverse (-)
9142918 .. 9164193
21276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288290.1

Sequence Viewer

Length: 561 bp
ATGTCATCGATTCATTTCACAAATATTTCTACACAAGCTTTACATGACAATCATCACAAAGATTCACCACGAAATTTGTTATGTTTGGTTGAGGGTGGAAGTGGTTCAGGGGGATTACAGCTTCTCTTGCCCGTCACGAAACCCAAGCCTCACAGAGAAATCCATATTCGGACTTTACCTGTTGAGATTGCACACACCGGTGAACAAACCAACACGGGGTCTAGCGGGAATTCGGATGGAAGTACGCACGGGGACTTGACTTTGGTGGATCATACGCCAAACATTCAACAAGGGCTTTTCTTAACCCCTGAGGATCAGTTGATTTACCCAAACCCACTACCGTCCGAATGGAGCAAACTGCCAAAGGCTTTATCTACAGATCTGGCCCATAAGTTGGCCCAGATGAAGGTGGACATTCAGCAAATGCTCGCGGGAAAGGCGGAAGCTAACGACTGCTATAGTAACCTTCTGGGAAATTTTTGGAATGCGCCCTGCGCATGGTGCTCCCCGCGCATGGTGCTCCCCAAACGGAAGTTAACGGAAGAGCAAAATGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.41

Weight (kDa)

6.39

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 496
AccB7I CCANNNNNTGG 1 cut(s) 394
AccII CGCG 2 cut(s) 431, 511
AciI CCGC 4 cut(s) 225, 431, 440, 509
AclWI GGATC 2 cut(s) 276, 321
AcsI RAATTY 3 cut(s) 73, 229, 475
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 5 cut(s) 216, 394, 406, 498, 514
AgeI ACCGGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 287
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 3 cut(s) 38, 121, 446
AluI AGCT 3 cut(s) 38, 121, 446
Alw21I GWGCWC 2 cut(s) 506, 522
AlwI GGATC 2 cut(s) 276, 321
AoxI GGCC 2 cut(s) 384, 396
ApoI RAATTY 3 cut(s) 73, 229, 475
AsiGI ACCGGT 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 3 cut(s) 490, 497, 513
AspS9I GGNCC 2 cut(s) 385, 397
AsuHPI GGTGA 2 cut(s) 57, 212
AxyI CCTNAGG 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 506, 522
BccI CCATC 1 cut(s) 230
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 2 cut(s) 375, 457
BglII AGATCT 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 385, 397
Bsa29I ATCGAT 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 5 cut(s) 216, 394, 406, 498, 514
Bse118I RCCGGY 1 cut(s) 197
Bse21I CCTNAGG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 8
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 5 cut(s) 216, 394, 406, 498, 514
BseMII CTCAG 1 cut(s) 300
Bsh1236I CGCG 2 cut(s) 431, 511
BshFI GGCC 2 cut(s) 386, 398
BshTI ACCGGT 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 506, 522
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 5 cut(s) 216, 394, 406, 498, 514
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 2 cut(s) 386, 398
Bsp1286I GDGCHC 2 cut(s) 506, 522
Bsp143I GATC 3 cut(s) 268, 313, 379
BspACI CCGC 4 cut(s) 225, 431, 440, 509
BspANI GGCC 2 cut(s) 386, 398
BspCNI CTCAG 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 8
BspFNI CGCG 2 cut(s) 431, 511
BspPI GGATC 2 cut(s) 276, 321
BspQI GCTCTTC 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 3 cut(s) 268, 313, 379
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 537
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 2 cut(s) 431, 511
BstHHI GCGC 3 cut(s) 490, 497, 513
BstKTI GATC 3 cut(s) 271, 316, 382
BstMBI GATC 3 cut(s) 268, 313, 379
BstMWI GCNNNNNNNGC 6 cut(s) 127, 437, 494, 501, 510, 517
BstSFI CTRYAG 2 cut(s) 375, 457
BstUI CGCG 2 cut(s) 431, 511
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
Bsu15I ATCGAT 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 386, 398
BsuTUI ATCGAT 1 cut(s) 8
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 429
CfoI GCGC 3 cut(s) 490, 497, 513
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 385, 397
ClaI ATCGAT 1 cut(s) 8
Csp6I GTAC 1 cut(s) 243
CspAI ACCGGT 1 cut(s) 197
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 3 cut(s) 44, 498, 514
CviJI RGCY 8 cut(s) 38, 121, 148, 295, 368, 386, 398, 446
CviKI_1 RGCY 8 cut(s) 38, 121, 148, 295, 368, 386, 398, 446
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 309
DpnI GATC 3 cut(s) 270, 315, 381
DpnII GATC 3 cut(s) 268, 313, 379
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
EciI GGCGGA 1 cut(s) 455
Eco81I CCTNAGG 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 229
FaeI CATG 3 cut(s) 47, 501, 517
FaiI YATR 8 cut(s) 45, 82, 165, 273, 390, 459, 499, 515
FaqI GGGAC 1 cut(s) 266
FatI CATG 3 cut(s) 43, 497, 513
FauI CCCGC 3 cut(s) 218, 424, 516
FokI GGATG 1 cut(s) 248
FspBI CTAG 1 cut(s) 222
FspI TGCGCA 1 cut(s) 496
GlaI GCGC 3 cut(s) 489, 496, 512
HaeIII GGCC 2 cut(s) 386, 398
HapII CCGG 1 cut(s) 198
HhaI GCGC 3 cut(s) 490, 497, 513
Hin1II CATG 3 cut(s) 47, 501, 517
Hin6I GCGC 3 cut(s) 488, 495, 511
HinP1I GCGC 3 cut(s) 488, 495, 511
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 10, 62
HpaI GTTAAC 1 cut(s) 537
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 57, 212
Hpy166II GTNNAC 3 cut(s) 203, 412, 537
Hpy188I TCNGA 3 cut(s) 171, 235, 346
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 203, 412, 537
HpyAV CCTTC 2 cut(s) 400, 476
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 437, 494, 501, 510, 517
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 3 cut(s) 47, 501, 517
HspAI GCGC 3 cut(s) 488, 495, 511
KspAI GTTAAC 1 cut(s) 537
Kzo9I GATC 3 cut(s) 268, 313, 379
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 3 cut(s) 351, 509, 525
LpnPI CCDG 8 cut(s) 93, 192, 211, 321, 368, 413, 455, 505
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 133, 461
MalI GATC 3 cut(s) 270, 315, 381
MboI GATC 3 cut(s) 268, 313, 379
MboII GAAGA 1 cut(s) 554
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 506, 522
MluCI AATT 3 cut(s) 73, 229, 475
MnlI CCTC 3 cut(s) 85, 159, 304
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 3 cut(s) 302, 536, 559
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 490
MvnI CGCG 2 cut(s) 431, 511
MwoI GCNNNNNNNGC 6 cut(s) 127, 437, 494, 501, 510, 517
NdeII GATC 3 cut(s) 268, 313, 379
NlaIII CATG 3 cut(s) 47, 501, 517
NmuCI GTSAC 1 cut(s) 133
NsbI TGCGCA 1 cut(s) 496
OliI CACNNNNGTG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 537
PctI GAATGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 10, 62
PflMI CCANNNNNTGG 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 197
PspPI GGNCC 2 cut(s) 385, 397
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 302, 536, 559
Sau3AI GATC 3 cut(s) 268, 313, 379
Sau96I GGNCC 2 cut(s) 385, 397
SduI GDGCHC 2 cut(s) 506, 522
SetI ASST 6 cut(s) 40, 123, 181, 411, 448, 468
SfcI CTRYAG 2 cut(s) 375, 457
SgrAI CRCCGGYG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 3 cut(s) 73, 229, 475
SsiI CCGC 4 cut(s) 225, 431, 440, 509
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 73, 229, 475
TfiI GAWTC 2 cut(s) 10, 62
Tru1I TTAA 3 cut(s) 302, 536, 559
Tru9I TTAA 3 cut(s) 302, 536, 559
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 2 cut(s) 544, 554
Van91I CCANNNNNTGG 1 cut(s) 394
XapI RAATTY 3 cut(s) 73, 229, 475
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.