RLG00000036567

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000336
Physical Location & Seq
Reverse (-)
82030293 .. 82034298
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036567

Sequence Viewer

Length: 540 bp
ATGATAACAAGTGGTAGTACCAACTTATTCGAAATTTTCTTAGACCTGGATGCACTCCCTCAAGTACCCGGTGGGGATCATTTACTCGGTGATGTTACGGAGGTCAATCACCGCATCGGAGGGGATGAGATCAAGCTCCAGGATGCTACTGGTGGACCTGTAGCTCGAGAAGAGAGGAACGTTGAAAAGACTGCGGTCGAAACAGTTGAGGCTGAACCGAAAGATGAGGATCAGCAGGGAGTCGAGCTGTTGAAGGTAACAGAGGCTAGTTCGGCAGCTATAGTGCCAGTAGGGAAGGATCTCCTTCCAGTTGAAGATGGATTGGCTCAGGCAGCTATAACAAACAAAGCATTGGAAACGGTGGATATCATGGCTCTGGAGAAGTCTGCAACTGTAGGCATAGAGCAAGTGTTGGAGGCGCCAAGGAAGAGAGGCAGACCAAGAGGAGCCAAGAATAAACCTAAGCAAGAGATCAAGGCGGTGAAGAAGTCTCCAAAGAAGAAGGCAAAGTCTTCAAGGAAGGCTGAAAGCCTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.16

Weight (kDa)

5.59

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AciI CCGC 3 cut(s) 112, 194, 479
AclI AACGTT 1 cut(s) 180
AclWI GGATC 3 cut(s) 84, 237, 306
AcsI RAATTY 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 2 cut(s) 19, 66
AgsI TTSAA 4 cut(s) 185, 253, 314, 516
AjnI CCWGG 2 cut(s) 45, 138
AluBI AGCT 5 cut(s) 136, 164, 247, 278, 335
AluI AGCT 5 cut(s) 136, 164, 247, 278, 335
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 3 cut(s) 84, 237, 306
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 275, 332
ApoI RAATTY 1 cut(s) 33
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 101, 101, 493
AsuII TTCGAA 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 287, 344
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 47, 140
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 2 cut(s) 267, 538
BfmI CTRYAG 3 cut(s) 159, 279, 393
BfoI RGCGCY 1 cut(s) 422
BisI GCNGC 2 cut(s) 276, 333
BlsI GCNGC 2 cut(s) 277, 334
Bme1390I CCNGG 3 cut(s) 47, 69, 140
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 420, 448
BmrFI CCNGG 3 cut(s) 47, 69, 140
BmsI GCATC 3 cut(s) 40, 123, 133
BoxI GACNNNNGTC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 504
BpmI CTGGAG 2 cut(s) 122, 398
Bpu10I CCTNAGC 2 cut(s) 327, 462
Bpu14I TTCGAA 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 422
Bse1I ACTGG 3 cut(s) 154, 287, 308
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 2 cut(s) 47, 140
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 3 cut(s) 55, 130, 148
BseJI GATNNNNATC 1 cut(s) 228
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 154, 287, 308
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 2 cut(s) 287, 344
Bsh1285I CGRYCG 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 495
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 30
Bsp143I GATC 5 cut(s) 76, 129, 229, 298, 471
BspACI CCGC 3 cut(s) 112, 194, 479
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 420, 448
BspPI GGATC 3 cut(s) 84, 237, 306
BspT104I TTCGAA 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 418
BsrI ACTGG 3 cut(s) 154, 287, 308
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 5 cut(s) 76, 129, 229, 298, 471
BssNI GRCGYC 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 422
Bst2UI CCWGG 2 cut(s) 47, 140
Bst4CI ACNGT 3 cut(s) 205, 361, 394
Bst6I CTCTTC 2 cut(s) 165, 422
BstACI GRCGYC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 40, 327, 462
BstF5I GGATG 3 cut(s) 55, 130, 148
BstH2I RGCGCY 1 cut(s) 422
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 5 cut(s) 79, 132, 232, 301, 474
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 5 cut(s) 76, 129, 229, 298, 471
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 272, 332
BstNI CCWGG 2 cut(s) 47, 140
BstPAI GACNNNNGTC 1 cut(s) 194
BstSCI CCNGG 3 cut(s) 45, 67, 138
BstSFI CTRYAG 3 cut(s) 159, 279, 393
BstV1I GCAGC 2 cut(s) 287, 344
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BtsCI GGATG 3 cut(s) 55, 130, 148
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 18, 65
CviAII CATG 1 cut(s) 370
CviQI GTAC 2 cut(s) 18, 65
DdeI CTNAG 3 cut(s) 40, 327, 462
DinI GGCGCC 1 cut(s) 420
DpnI GATC 5 cut(s) 78, 131, 231, 300, 473
DpnII GATC 5 cut(s) 76, 129, 229, 298, 471
Eam1104I CTCTTC 2 cut(s) 165, 422
EarI CTCTTC 2 cut(s) 165, 422
Eco130I CCWWGG 1 cut(s) 422
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 45, 138
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 422
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 1 cut(s) 373
FaiI YATR 4 cut(s) 281, 338, 371, 401
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 276, 333
FokI GGATG 3 cut(s) 62, 137, 155
Fsp4HI GCNGC 2 cut(s) 276, 333
FspBI CTAG 2 cut(s) 267, 538
GlaI GCGC 1 cut(s) 420
GluI GCNGC 2 cut(s) 276, 333
GsuI CTGGAG 2 cut(s) 122, 398
HaeII RGCGCY 1 cut(s) 422
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 1 cut(s) 240
HpaII CCGG 1 cut(s) 69
HphI GGTGA 3 cut(s) 101, 101, 493
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 167, 377
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 5 cut(s) 247, 289, 314, 496, 514
HpyCH4III ACNGT 3 cut(s) 205, 361, 394
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 53, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 332
HpyF3I CTNAG 3 cut(s) 40, 327, 462
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 419
KasI GGCGCC 1 cut(s) 418
Kzo9I GATC 5 cut(s) 76, 129, 229, 298, 471
LmnI GCTCC 2 cut(s) 141, 446
Lsp1109I GCAGC 2 cut(s) 287, 344
LweI GCATC 3 cut(s) 40, 123, 133
MaeI CTAG 2 cut(s) 267, 538
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 94, 256
MalI GATC 5 cut(s) 78, 131, 231, 300, 473
MboI GATC 5 cut(s) 76, 129, 229, 298, 471
MboII GAAGA 6 cut(s) 182, 326, 439, 496, 504, 511
MflI RGATCY 1 cut(s) 298
MluCI AATT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 393
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 3 cut(s) 47, 69, 140
MvaI CCWGG 2 cut(s) 47, 140
MwoI GCNNNNNNNGC 2 cut(s) 272, 332
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 1 cut(s) 69
NdeII GATC 5 cut(s) 76, 129, 229, 298, 471
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 2 cut(s) 420, 448
NspV TTCGAA 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 2 cut(s) 277, 334
PleI GAGTC 1 cut(s) 248
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 45, 138
PspGI CCWGG 2 cut(s) 45, 138
PspN4I GGNNCC 2 cut(s) 420, 448
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 19, 66
RsaNI GTAC 2 cut(s) 18, 65
SatI GCNGC 2 cut(s) 276, 333
Sau3AI GATC 5 cut(s) 76, 129, 229, 298, 471
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 3 cut(s) 47, 69, 140
SfaNI GCATC 3 cut(s) 40, 123, 133
SfcI CTRYAG 3 cut(s) 159, 279, 393
SfoI GGCGCC 1 cut(s) 420
Sfr274I CTCGAG 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 30
SinI GGWCC 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 60, 165
SmoI CTYRAG 2 cut(s) 60, 165
Sse9I AATT 1 cut(s) 33
SsiI CCGC 3 cut(s) 112, 194, 479
SspDI GGCGCC 1 cut(s) 418
SspMI CTAG 2 cut(s) 267, 538
StyD4I CCNGG 3 cut(s) 45, 67, 138
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 3 cut(s) 205, 361, 394
TaiI ACGT 1 cut(s) 183
TaqI TCGA 4 cut(s) 30, 166, 198, 243
TasI AATT 1 cut(s) 33
TseI GCWGC 2 cut(s) 275, 332
TspGWI ACGGA 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 2 cut(s) 267, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.