ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SET | PF00856 | 3 - 50 | 8.3e-08 | SET domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 127, 212, 226 |
| AcsI | RAATTY | 3 cut(s) | 27, 188, 245 |
| AgsI | TTSAA | 1 cut(s) | 119 |
| AjnI | CCWGG | 1 cut(s) | 211 |
| AlwI | GGATC | 3 cut(s) | 127, 212, 226 |
| ApeKI | GCWGC | 2 cut(s) | 231, 264 |
| ApoI | RAATTY | 3 cut(s) | 27, 188, 245 |
| AsuC2I | CCSGG | 1 cut(s) | 174 |
| AsuHPI | GGTGA | 1 cut(s) | 137 |
| BbvI | GCAGC | 2 cut(s) | 218, 276 |
| BccI | CCATC | 2 cut(s) | 71, 234 |
| BciT130I | CCWGG | 1 cut(s) | 213 |
| BcnI | CCSGG | 1 cut(s) | 174 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BisI | GCNGC | 2 cut(s) | 232, 265 |
| BlsI | GCNGC | 2 cut(s) | 233, 266 |
| Bme1390I | CCNGG | 2 cut(s) | 174, 213 |
| BmrFI | CCNGG | 2 cut(s) | 174, 213 |
| BpmI | CTGGAG | 1 cut(s) | 234 |
| BpuMI | CCSGG | 1 cut(s) | 174 |
| BsaBI | GATNNNNATC | 1 cut(s) | 95 |
| BsaJI | CCNNGG | 1 cut(s) | 173 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| Bse8I | GATNNNNATC | 1 cut(s) | 95 |
| BseBI | CCWGG | 1 cut(s) | 213 |
| BseDI | CCNNGG | 1 cut(s) | 173 |
| BseJI | GATNNNNATC | 1 cut(s) | 95 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseXI | GCAGC | 2 cut(s) | 218, 276 |
| BsgI | GTGCAG | 1 cut(s) | 217 |
| BsiSI | CCGG | 1 cut(s) | 173 |
| Bsp143I | GATC | 3 cut(s) | 132, 204, 218 |
| BspPI | GGATC | 3 cut(s) | 127, 212, 226 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BssECI | CCNNGG | 1 cut(s) | 173 |
| BssMI | GATC | 3 cut(s) | 132, 204, 218 |
| Bst2UI | CCWGG | 1 cut(s) | 213 |
| Bst4CI | ACNGT | 2 cut(s) | 106, 125 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 17 |
| BstEII | GGTNACC | 1 cut(s) | 180 |
| BstKTI | GATC | 3 cut(s) | 135, 207, 221 |
| BstMBI | GATC | 3 cut(s) | 132, 204, 218 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 261 |
| BstNI | CCWGG | 1 cut(s) | 213 |
| BstPI | GGTNACC | 1 cut(s) | 180 |
| BstSCI | CCNGG | 2 cut(s) | 172, 211 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 2 cut(s) | 218, 276 |
| BstX2I | RGATCY | 1 cut(s) | 132 |
| BstYI | RGATCY | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| CviAII | CATG | 1 cut(s) | 39 |
| DpnI | GATC | 3 cut(s) | 134, 206, 220 |
| DpnII | GATC | 3 cut(s) | 132, 204, 218 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco91I | GGTNACC | 1 cut(s) | 180 |
| EcoO65I | GGTNACC | 1 cut(s) | 180 |
| EcoRII | CCWGG | 1 cut(s) | 211 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 1 cut(s) | 42 |
| FaiI | YATR | 6 cut(s) | 6, 18, 40, 109, 227, 229 |
| FatI | CATG | 1 cut(s) | 38 |
| FauNDI | CATATG | 1 cut(s) | 227 |
| Fnu4HI | GCNGC | 2 cut(s) | 232, 265 |
| Fsp4HI | GCNGC | 2 cut(s) | 232, 265 |
| GluI | GCNGC | 2 cut(s) | 232, 265 |
| GsuI | CTGGAG | 1 cut(s) | 234 |
| HapII | CCGG | 1 cut(s) | 173 |
| Hin1II | CATG | 1 cut(s) | 42 |
| HinfI | GANTC | 3 cut(s) | 96, 115, 161 |
| HpaII | CCGG | 1 cut(s) | 173 |
| HphI | GGTGA | 1 cut(s) | 137 |
| HpyAV | CCTTC | 1 cut(s) | 195 |
| HpyCH4III | ACNGT | 2 cut(s) | 106, 125 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 20, 234, 264 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 261 |
| Hsp92II | CATG | 1 cut(s) | 42 |
| Kzo9I | GATC | 3 cut(s) | 132, 204, 218 |
| LpnPI | CCDG | 5 cut(s) | 101, 186, 198, 198, 225 |
| Lsp1109I | GCAGC | 2 cut(s) | 218, 276 |
| MaeIII | GTNAC | 4 cut(s) | 32, 64, 83, 180 |
| MalI | GATC | 3 cut(s) | 134, 206, 220 |
| MboI | GATC | 3 cut(s) | 132, 204, 218 |
| MboII | GAAGA | 1 cut(s) | 140 |
| MflI | RGATCY | 1 cut(s) | 132 |
| MluCI | AATT | 3 cut(s) | 27, 188, 245 |
| MlyI | GAGTC | 1 cut(s) | 170 |
| MnlI | CCTC | 2 cut(s) | 171, 209 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspI | CCGG | 1 cut(s) | 173 |
| MspR9I | CCNGG | 2 cut(s) | 174, 213 |
| MvaI | CCWGG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 261 |
| NciI | CCSGG | 1 cut(s) | 174 |
| NdeI | CATATG | 1 cut(s) | 227 |
| NdeII | GATC | 3 cut(s) | 132, 204, 218 |
| NlaIII | CATG | 1 cut(s) | 42 |
| NmuCI | GTSAC | 1 cut(s) | 32 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PfeI | GAWTC | 2 cut(s) | 96, 115 |
| PfoI | TCCNGGA | 1 cut(s) | 211 |
| PkrI | GCNGC | 2 cut(s) | 233, 266 |
| PleI | GAGTC | 1 cut(s) | 169 |
| PpsI | GAGTC | 1 cut(s) | 169 |
| Psp6I | CCWGG | 1 cut(s) | 211 |
| PspEI | GGTNACC | 1 cut(s) | 180 |
| PspGI | CCWGG | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 132 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 2 cut(s) | 232, 265 |
| Sau3AI | GATC | 3 cut(s) | 132, 204, 218 |
| SchI | GAGTC | 1 cut(s) | 170 |
| ScrFI | CCNGG | 2 cut(s) | 174, 213 |
| SetI | ASST | 3 cut(s) | 17, 182, 187 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| Sse9I | AATT | 3 cut(s) | 27, 188, 245 |
| StyD4I | CCNGG | 2 cut(s) | 172, 211 |
| TaaI | ACNGT | 2 cut(s) | 106, 125 |
| TaqI | TCGA | 1 cut(s) | 221 |
| TasI | AATT | 3 cut(s) | 27, 188, 245 |
| TfiI | GAWTC | 2 cut(s) | 96, 115 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 109 |
| TseFI | GTSAC | 1 cut(s) | 32 |
| TseI | GCWGC | 2 cut(s) | 231, 264 |
| Tsp45I | GTSAC | 1 cut(s) | 32 |
| TspRI | CASTG | 1 cut(s) | 109 |
| XapI | RAATTY | 3 cut(s) | 27, 188, 245 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |