Rmu_co8268067.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8268067.1
OG0000336
Physical Location & Seq
Reverse (-)
4 .. 658
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8268067.1_g000001.1.cds

Sequence Viewer

Length: 552 bp
atggtggctaaatgggctccggtggttttggcaccatatgatggagttggaggaatcaaagatgtgccgcttactacacttgctttctggattaaggtgcatggactatcgccggattttcacacggatcactgtcttaagaggataggcagtttcgtaggttggtttgttcaaaaggacaccacagagtttgatgcaggaagaatcaggattcggggtgagttagacctattgcagcctatcatctttcggcgtagcttcacggcagatgatggtattgtggtggatttggaattctttttcgagaatttgtatggcaggtgcagggattgtggacttgtcacttatgttggcttgccgtgttctggaactcctttaccagcagagctgcaaaatgatactcctttagcacgtcgaaatctggagtgtgttttgaacctcgtggatgtgatacagccgactggaccaatgttggtttttggggcacagaaaaccccccatgttggtttagagaggtttatgccaactgttaagcctaaaaggaggaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

183

Amino Acids

20.51

Weight (kDa)

8.3

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 31
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 293, 307
AfiI CCNNNNNNNGG 3 cut(s) 41, 365, 503
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 173, 436
AjiI CACGTC 1 cut(s) 413
AluBI AGCT 2 cut(s) 258, 388
AluI AGCT 2 cut(s) 258, 388
AlwI GGATC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 235, 388
ApoI RAATTY 2 cut(s) 293, 307
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 19
BauI CACGAG 1 cut(s) 440
BbvI GCAGC 2 cut(s) 247, 375
BccI CCATC 2 cut(s) 35, 266
BceAI ACGGC 2 cut(s) 279, 343
BfrI CTTAAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 3 cut(s) 68, 236, 389
BlsI GCNGC 3 cut(s) 69, 237, 390
Bme18I GGWCC 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 18, 33
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 365, 503
Bse1I ACTGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 3 cut(s) 41, 365, 503
BseNI ACTGG 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 2 cut(s) 247, 375
BsgI GTGCAG 1 cut(s) 343
BshNI GGYRCC 1 cut(s) 31
BsiSI CCGG 2 cut(s) 20, 113
BslI CCNNNNNNNGG 3 cut(s) 41, 365, 503
Bsp1286I GDGCHC 2 cut(s) 19, 487
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 18, 33
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 466
BssMI GATC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 134, 529
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 356
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 247, 375
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 464
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 2 cut(s) 101, 500
CviJI RGCY 8 cut(s) 8, 17, 238, 258, 354, 388, 457, 535
CviKI_1 RGCY 8 cut(s) 8, 17, 238, 258, 354, 388, 457, 535
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 2 cut(s) 104, 503
FaiI YATR 7 cut(s) 37, 39, 102, 315, 348, 501, 521
FatI CATG 2 cut(s) 100, 499
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 68, 236, 389
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 68, 236, 389
GluI GCNGC 3 cut(s) 68, 236, 389
GsuI CTGGAG 1 cut(s) 443
HapII CCGG 2 cut(s) 20, 113
Hin1II CATG 2 cut(s) 104, 503
HinfI GANTC 3 cut(s) 54, 204, 211
HpaII CCGG 2 cut(s) 20, 113
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 335
Hpy188III TCNNGA 5 cut(s) 88, 208, 304, 366, 422
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 1 cut(s) 417
HpyCH4III ACNGT 2 cut(s) 134, 529
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 5 cut(s) 100, 197, 235, 324, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 2 cut(s) 104, 503
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 247, 375
LweI GCATC 1 cut(s) 184
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 19, 487
MluCI AATT 2 cut(s) 293, 307
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 5 cut(s) 44, 135, 449, 507, 537
MseI TTAA 3 cut(s) 93, 138, 531
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 2 cut(s) 20, 113
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 37
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 104, 503
NlaIV GGNNCC 2 cut(s) 18, 33
NmuCI GTSAC 1 cut(s) 340
PaqCI CACCTGC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 54, 204, 211
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 3 cut(s) 69, 237, 390
PspN4I GGNNCC 2 cut(s) 18, 33
PspPI GGNCC 1 cut(s) 464
SaqAI TTAA 3 cut(s) 93, 138, 531
SatI GCNGC 3 cut(s) 68, 236, 389
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 464
SduI GDGCHC 2 cut(s) 19, 487
SetI ASST 9 cut(s) 99, 163, 231, 260, 323, 390, 415, 441, 518
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 293, 307
SsiI CCGC 1 cut(s) 68
TaaI ACNGT 2 cut(s) 134, 529
TaiI ACGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 303, 415
TasI AATT 2 cut(s) 293, 307
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 54, 204, 211
Tru1I TTAA 3 cut(s) 93, 138, 531
Tru9I TTAA 3 cut(s) 93, 138, 531
TscAI CASTG 1 cut(s) 137
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 2 cut(s) 235, 388
Tsp45I GTSAC 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 41
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 2 cut(s) 293, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.