Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004564.1

Orthogroup ID

OG0000336

Physical Location & Seq

Genomic Coordinates Forward (+)

23101 .. 23460

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004564.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgggatggttgtccgcgatgctggggctagcggatggacggaaatcggtggacctccggccaccaaaaaggaagggtctgcgtcaactgcagacgtatttggttggaaagcagctgacggcccgagcgtttaacaagcgctcgttcatgggcatgttccgctgtgcatggcgactcaatggccggtatatggcacaggcgcacggggatcgtttccttttcaccttgactgacccctctaatcgcaaccgtttacttcgaggagggccatggggtttcgatagggcaccggttgtgttagcaccgtatgacggtgtggaggatcttatggttgtcccactctcgtcacttgctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

119

Amino Acids

13.47

Weight (kDa)

11.11

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species	Orthologous Gene IDs
malus_domestica	MD05G1024100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata	RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora	Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii	Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa	Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha	Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana	Rw2G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AccII	CGCG	1 cut(s)	17
AciI	CCGC	3 cut(s)	15, 32, 160
AclWI	GGATC	2 cut(s)	216, 330
AcoI	YGGCCR	2 cut(s)	59, 181
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	190, 311
AgeI	ACCGGT	1 cut(s)	289
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	2 cut(s)	216, 330
Ama87I	CYCGRG	1 cut(s)	123
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	4 cut(s)	59, 120, 181, 266
ApeKI	GCWGC	1 cut(s)	112
AsiGI	ACCGGT	1 cut(s)	289
AspLEI	GCGC	2 cut(s)	141, 202
AspS9I	GGNCC	3 cut(s)	52, 121, 266
AsuHPI	GGTGA	1 cut(s)	214
AsuNHI	GCTAGC	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BfaI	CTAG	2 cut(s)	29, 358
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	52, 121, 266
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	9
BmtI	GCTAGC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 311
Bse118I	RCCGGY	2 cut(s)	183, 289
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	11, 40
BseLI	CCNNNNNNNGG	2 cut(s)	190, 311
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	4 cut(s)	61, 122, 183, 268
BshNI	GGYRCC	1 cut(s)	286
BshTI	ACCGGT	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	58, 184, 290
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	190, 311
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	61, 122, 183, 268
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	208, 322
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	3 cut(s)	15, 32, 160
BspANI	GGCC	4 cut(s)	61, 122, 183, 268
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	216, 330
BspT107I	GGYRCC	1 cut(s)	286
BsrFI	RCCGGY	2 cut(s)	183, 289
BssAI	RCCGGY	2 cut(s)	183, 289
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	2 cut(s)	208, 322
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	251, 306, 314
BstC8I	GCNNGC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	11, 40
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 202
BstKTI	GATC	2 cut(s)	211, 325
BstMBI	GATC	2 cut(s)	208, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 159
BstNSI	RCATGY	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	61, 122, 183, 268
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	11, 40
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	2 cut(s)	141, 202
Cfr10I	RCCGGY	2 cut(s)	183, 289
Cfr13I	GGNCC	3 cut(s)	52, 121, 266
CseI	GACGC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	4 cut(s)	148, 154, 168, 270
CviJI	RGCY	6 cut(s)	28, 61, 115, 122, 183, 268
CviKI_1	RGCY	6 cut(s)	28, 61, 115, 122, 183, 268
DpnI	GATC	2 cut(s)	210, 324
DpnII	GATC	2 cut(s)	208, 322
EaeI	YGGCCR	2 cut(s)	59, 181
Eco130I	CCWWGG	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	4 cut(s)	151, 157, 171, 273
FaiI	YATR	8 cut(s)	149, 155, 169, 189, 191, 271, 309, 329
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	4 cut(s)	147, 153, 167, 269
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	18, 47
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	2 cut(s)	29, 358
GlaI	GCGC	2 cut(s)	140, 201
GluI	GCNGC	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	61, 122, 183, 268
HapII	CCGG	3 cut(s)	58, 184, 290
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	141, 202
Hin1II	CATG	4 cut(s)	151, 157, 171, 273
Hin6I	GCGC	2 cut(s)	139, 200
HinP1I	GCGC	2 cut(s)	139, 200
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	174
HpaII	CCGG	3 cut(s)	58, 184, 290
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	52, 86, 254
Hpy8I	GTNNAC	3 cut(s)	52, 86, 254
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	251, 306, 314
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	91, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 159
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	151, 157, 171, 273
HspAI	GCGC	2 cut(s)	139, 200
Kzo9I	GATC	2 cut(s)	208, 322
LpnPI	CCDG	5 cut(s)	8, 71, 182, 197, 303
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	2 cut(s)	29, 358
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	2 cut(s)	210, 324
MboI	GATC	2 cut(s)	208, 322
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	5 cut(s)	65, 247, 254, 257, 313
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	2 cut(s)	115, 162
MspI	CCGG	3 cut(s)	58, 184, 290
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	88, 159
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	2 cut(s)	208, 322
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	4 cut(s)	151, 157, 171, 273
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	52, 121, 266
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	208, 322
Sau96I	GGNCC	3 cut(s)	52, 121, 266
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	4 cut(s)	57, 98, 117, 227
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	152
SsiI	CCGC	3 cut(s)	15, 32, 160
SspMI	CTAG	2 cut(s)	29, 358
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	251, 306, 314
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	259, 279
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	2 cut(s)	29, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.