Rh1AG423800

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000336
Physical Location & Seq
Forward (+)
65328922 .. 65332205
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG423800.1

Sequence Viewer

Length: 510 bp
ATGGAAACACAAACACTTCCCAAGGCCGAGCCGGAACGCGACTATGCTCCGGTGAAGAGCTTCGGGGAGGGCCTGTCGGTTGGTTGGAAGGAGACGGTGAAGCTATGGAAAGTTGCAGCTCCGGTGGCTTGTACGACTCTTTTTCAGTACCTGATTCATTCCATCACCACCATCTTCATCGGCCATCTCGGAGATCTTCAGCTCTCTGCTATTTCCCTCGCTCATAATTGCGACGTTTCCAACGCCGAGGACTCCAAGGCCAAGCTCTCGTCGTTGACCGACGTCACTCACTCACTCACCTCTTCTACGTCACCTGGACCAGCCGATCCACCGAGGTCAGTCACCGCTTTGGAGTGGGATGAGATCGAGTTTCCGGATGCTACTGGTGGACCTGTAGCTCGAGGTGTTCGACGAATCGCCACGGCAGAGGAGGACTTGGGAGTGGAACCGCCGTCGTCGTCGACGGAGAAATTGTCGACTTTGAATTCGGCGTTGTGGTCGTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

169

Amino Acids

18.08

Weight (kDa)

4.82

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
AccI GTMKAC 2 cut(s) 461, 476
AccII CGCG 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 2 cut(s) 345, 449
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 133, 149
AgsI TTSAA 1 cut(s) 484
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 6 cut(s) 60, 103, 119, 202, 265, 398
AluI AGCT 6 cut(s) 60, 103, 119, 202, 265, 398
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 399
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 4 cut(s) 24, 70, 181, 258
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 484
ArsI GACNNNNNNTTYG 2 cut(s) 469, 501
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 70, 317, 389
AsuHPI GGTGA 6 cut(s) 64, 109, 157, 289, 303, 334
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 317, 389
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 170, 179, 192
BceAI ACGGC 2 cut(s) 436, 438
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 393
BglII AGATCT 1 cut(s) 193
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 317, 389
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 3 cut(s) 70, 317, 389
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 367
BoxI GACNNNNGTC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 5 cut(s) 21, 246, 255, 332, 420
BsaWI WCCGGW 3 cut(s) 49, 121, 373
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 458, 488
Bse1I ACTGG 1 cut(s) 388
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 5 cut(s) 21, 246, 255, 332, 420
BseGI GGATG 2 cut(s) 364, 382
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 4 cut(s) 26, 72, 183, 260
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 4 cut(s) 32, 50, 122, 374
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 4 cut(s) 26, 72, 183, 260
BsoBI CYCGRG 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 3 cut(s) 193, 325, 363
BspACI CCGC 2 cut(s) 345, 449
BspANI GGCC 4 cut(s) 26, 72, 183, 260
BspEI TCCGGA 1 cut(s) 373
BspFNI CGCG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 50
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 5 cut(s) 21, 246, 255, 332, 420
BssMI GATC 3 cut(s) 193, 325, 363
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 21, 255
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 50, 307
BstACI GRCGYC 1 cut(s) 282
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 364, 382
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 3 cut(s) 196, 328, 366
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 193, 325, 363
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 315
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 393
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 4 cut(s) 26, 72, 183, 260
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 364, 382
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 70, 317, 389
Csp6I GTAC 2 cut(s) 132, 148
CviQI GTAC 2 cut(s) 132, 148
DpnI GATC 3 cut(s) 195, 327, 365
DpnII GATC 3 cut(s) 193, 325, 363
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 50, 307
EarI CTCTTC 2 cut(s) 50, 307
Eco130I CCWWGG 2 cut(s) 21, 255
Eco47I GGWCC 2 cut(s) 317, 389
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 21, 255
ErhI CCWWGG 2 cut(s) 21, 255
Esp3I CGTCTC 1 cut(s) 86
FaiI YATR 4 cut(s) 45, 106, 225, 508
FblI GTMKAC 2 cut(s) 461, 476
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 371, 389
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 4 cut(s) 26, 72, 183, 260
HapII CCGG 4 cut(s) 32, 50, 122, 374
Hin1I GRCGYC 1 cut(s) 282
HincII GTYRAC 3 cut(s) 276, 462, 477
HindII GTYRAC 3 cut(s) 276, 462, 477
HinfI GANTC 4 cut(s) 136, 154, 251, 414
HpaII CCGG 4 cut(s) 32, 50, 122, 374
HphI GGTGA 6 cut(s) 64, 109, 157, 289, 303, 334
Hpy166II GTNNAC 4 cut(s) 276, 389, 462, 477
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 4 cut(s) 276, 389, 462, 477
Hpy99I CGWCG 8 cut(s) 236, 274, 284, 414, 457, 460, 463, 466
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 3 cut(s) 234, 282, 308
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpySE526I ACGT 3 cut(s) 234, 282, 308
Hsp92I GRCGYC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 193, 325, 363
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 52, 124
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 367
MaeII ACGT 3 cut(s) 234, 282, 308
MaeIII GTNAC 4 cut(s) 283, 309, 340, 501
MalI GATC 3 cut(s) 195, 327, 365
MboI GATC 3 cut(s) 193, 325, 363
MboII GAAGA 4 cut(s) 67, 166, 188, 294
MflI RGATCY 1 cut(s) 193
MluCI AATT 3 cut(s) 226, 470, 484
MlyI GAGTC 2 cut(s) 130, 245
MmeI TCCRAC 2 cut(s) 65, 264
MnlI CCTC 8 cut(s) 61, 227, 241, 310, 327, 395, 421, 424
MroI TCCGGA 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 59
MspI CCGG 4 cut(s) 32, 50, 122, 374
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 3 cut(s) 193, 325, 363
NlaIV GGNNCC 1 cut(s) 447
NmeAIII GCCGAG 2 cut(s) 52, 271
NmuCI GTSAC 3 cut(s) 283, 309, 340
PaeR7I CTCGAG 1 cut(s) 399
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 154, 414
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 130, 245
PpsI GAGTC 2 cut(s) 130, 245
PshAI GACNNNNGTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 3 cut(s) 70, 317, 389
PspXI VCTCGAGB 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 133, 149
RsaNI GTAC 2 cut(s) 132, 148
SalI GTCGAC 2 cut(s) 460, 475
SapI GCTCTTC 1 cut(s) 50
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 193, 325, 363
Sau96I GGNCC 3 cut(s) 70, 317, 389
SchI GAGTC 2 cut(s) 130, 245
ScrFI CCNGG 1 cut(s) 315
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 399
SgrDI CGTCGACG 1 cut(s) 460
SinI GGWCC 2 cut(s) 317, 389
SlaI CTCGAG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 226, 470, 484
SsiI CCGC 2 cut(s) 345, 449
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 21, 255
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 3 cut(s) 237, 285, 311
TaqI TCGA 5 cut(s) 366, 400, 409, 461, 476
TaqII GACCGA 1 cut(s) 293
TasI AATT 3 cut(s) 226, 470, 484
TfiI GAWTC 2 cut(s) 154, 414
TseFI GTSAC 3 cut(s) 283, 309, 340
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 283, 309, 340
TspDTI ATGAA 2 cut(s) 146, 166
TspGWI ACGGA 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 317, 389
XapI RAATTY 1 cut(s) 484
XhoI CTCGAG 1 cut(s) 399
XmiI GTMKAC 2 cut(s) 461, 476
XmnI GAANNNNTTC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.