Rmu_co8324697.1_g000001

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8324697.1
OG0000336
Physical Location & Seq
Reverse (-)
153 .. 748
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8324697.1_g000001.1.cds

Sequence Viewer

Length: 528 bp
atggaagacgtcgacgagatggccgtgcgcctggctgcatccttaggactagcggatgcgggccggccggtggatctgcgaccttctcatgcgatcttttatgggatcctccggcgagcatgctggttgaatgaccactacatcgtccaggagtatgatggccactttctttttaacttgttggacccaactggttgtaaccggattctctggggtagtccttggggttttgacagagctctggtggttttggcaccatatgatggaattggagcaatcaaagatgtaccggttactacactagctttctggatcaaggtgtgtggactatcacaggattttcacacaaatcactgtcttagaaggattggcaatgcaatgggttggtatgttcaaaaggacaccacagagtttgatgtaggaagaatccagatccgggttgaattggacctactgcaacctatcatctttcatcgtagctttactgtagatgatggtattgtggtggatttggattttttcgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

175

Amino Acids

19.88

Weight (kDa)

5.05

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 253
AccB7I CCANNNNNTGG 1 cut(s) 263
AccI GTMKAC 1 cut(s) 12
AciI CCGC 2 cut(s) 53, 59
AclWI GGATC 5 cut(s) 81, 100, 113, 320, 427
AcoI YGGCCR 3 cut(s) 21, 65, 160
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 3 cut(s) 70, 263, 436
AgeI ACCGGT 1 cut(s) 289
AgsI TTSAA 3 cut(s) 130, 395, 443
AjnI CCWGG 2 cut(s) 30, 147
AluBI AGCT 3 cut(s) 239, 305, 480
AluI AGCT 3 cut(s) 239, 305, 480
Alw21I GWGCWC 1 cut(s) 241
AlwI GGATC 5 cut(s) 81, 100, 113, 320, 427
AoxI GGCC 4 cut(s) 21, 61, 65, 160
ApeKI GCWGC 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 289
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 3 cut(s) 61, 184, 448
AsuC2I CCSGG 1 cut(s) 437
AvaII GGWCC 2 cut(s) 184, 448
AxyI CCTNAGG 1 cut(s) 43
BalI TGGCCA 1 cut(s) 162
BamHI GGATCC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 22
BccI CCATC 4 cut(s) 13, 152, 257, 488
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 2 cut(s) 32, 149
BcnI CCSGG 1 cut(s) 437
BfaI CTAG 3 cut(s) 50, 302, 526
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 32, 149, 437
Bme18I GGWCC 2 cut(s) 184, 448
BmgT120I GGNCC 3 cut(s) 61, 184, 448
BmiI GGNNCC 3 cut(s) 107, 186, 255
BmrFI CCNGG 3 cut(s) 32, 149, 437
BmsI GCATC 2 cut(s) 46, 47
BpiI GAAGAC 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 2 cut(s) 201, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 263, 436
Bse118I RCCGGY 3 cut(s) 63, 67, 289
Bse1I ACTGG 1 cut(s) 196
Bse21I CCTNAGG 1 cut(s) 43
Bse3DI GCAATG 2 cut(s) 379, 384
BseBI CCWGG 2 cut(s) 32, 149
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 38, 61
BseLI CCNNNNNNNGG 3 cut(s) 70, 263, 436
BseMI GCAATG 2 cut(s) 379, 384
BseNI ACTGG 1 cut(s) 196
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 4 cut(s) 23, 63, 67, 162
BshNI GGYRCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 6 cut(s) 64, 68, 112, 202, 290, 436
BslI CCNNNNNNNGG 3 cut(s) 70, 263, 436
BsnI GGCC 4 cut(s) 23, 63, 67, 162
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 5 cut(s) 73, 93, 105, 312, 432
BspACI CCGC 2 cut(s) 53, 59
BspANI GGCC 4 cut(s) 23, 63, 67, 162
BspLI GGNNCC 3 cut(s) 107, 186, 255
BspPI GGATC 5 cut(s) 81, 100, 113, 320, 427
BspT107I GGYRCC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 379, 384
BsrFI RCCGGY 3 cut(s) 63, 67, 289
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 3 cut(s) 63, 67, 289
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 5 cut(s) 73, 93, 105, 312, 432
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 32, 149
Bst4CI ACNGT 2 cut(s) 356, 487
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 4 cut(s) 61, 65, 117, 121
BstDEI CTNAG 2 cut(s) 43, 359
BstF5I GGATG 2 cut(s) 38, 61
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 5 cut(s) 76, 96, 108, 315, 435
BstMBI GATC 5 cut(s) 73, 93, 105, 312, 432
BstMCI CGRYCG 1 cut(s) 68
BstNI CCWGG 2 cut(s) 32, 149
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 3 cut(s) 30, 147, 435
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 73, 105, 432
BstYI RGATCY 3 cut(s) 73, 105, 432
BstZI CGGCCG 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 43
BsuRI GGCC 4 cut(s) 23, 63, 67, 162
BtsCI GGATG 2 cut(s) 38, 61
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 4 cut(s) 61, 65, 117, 121
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 3 cut(s) 63, 67, 289
Cfr13I GGNCC 3 cut(s) 61, 184, 448
Csp6I GTAC 1 cut(s) 287
CspAI ACCGGT 1 cut(s) 289
CspCI CAANNNNNGTGG 4 cut(s) 304, 339, 394, 429
CviAII CATG 2 cut(s) 89, 120
CviJI RGCY 8 cut(s) 23, 35, 63, 67, 162, 239, 305, 480
CviKI_1 RGCY 8 cut(s) 23, 35, 63, 67, 162, 239, 305, 480
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 43, 359
DpnI GATC 5 cut(s) 75, 95, 107, 314, 434
DpnII GATC 5 cut(s) 73, 93, 105, 312, 432
EaeI YGGCCR 3 cut(s) 21, 65, 160
EagI CGGCCG 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 239
EclXI CGGCCG 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 184, 448
Eco52I CGGCCG 1 cut(s) 65
Eco53kI GAGCTC 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 30, 147
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 92, 123
FaiI YATR 7 cut(s) 90, 102, 121, 156, 259, 261, 390
FatI CATG 2 cut(s) 88, 119
FauI CCCGC 1 cut(s) 52
FauNDI CATATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 25, 68
FriOI GRGCYC 1 cut(s) 241
FseI GGCCGGCC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 3 cut(s) 50, 302, 526
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 4 cut(s) 23, 63, 67, 162
HapII CCGG 6 cut(s) 64, 68, 112, 202, 290, 436
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 92, 123
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 2 cut(s) 205, 426
HpaII CCGG 6 cut(s) 64, 68, 112, 202, 290, 436
Hpy166II GTNNAC 2 cut(s) 13, 326
Hpy188III TCNNGA 2 cut(s) 310, 430
Hpy8I GTNNAC 2 cut(s) 13, 326
Hpy99I CGWCG 2 cut(s) 14, 17
HpyAV CCTTC 2 cut(s) 93, 357
HpyCH4III ACNGT 2 cut(s) 356, 487
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 38, 377, 457
HpyF3I CTNAG 2 cut(s) 43, 359
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 92, 123
HspAI GCGC 1 cut(s) 28
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Kzo9I GATC 5 cut(s) 73, 93, 105, 312, 432
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 46, 47
MaeI CTAG 3 cut(s) 50, 302, 526
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 197, 292
MalI GATC 5 cut(s) 75, 95, 107, 314, 434
MboI GATC 5 cut(s) 73, 93, 105, 312, 432
MboII GAAGA 2 cut(s) 17, 435
MflI RGATCY 3 cut(s) 73, 105, 432
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 2 cut(s) 267, 443
MluNI TGGCCA 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 119
Mox20I TGGCCA 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 63
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 162
MspI CCGG 6 cut(s) 64, 68, 112, 202, 290, 436
MspR9I CCNGG 3 cut(s) 32, 149, 437
MvaI CCWGG 2 cut(s) 32, 149
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 437
NdeI CATATG 1 cut(s) 259
NdeII GATC 5 cut(s) 73, 93, 105, 312, 432
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 2 cut(s) 92, 123
NlaIV GGNNCC 3 cut(s) 107, 186, 255
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 205, 426
PflMI CCANNNNNTGG 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 147
PinAI ACCGGT 1 cut(s) 289
PkrI GCNGC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 30, 147
PspGI CCWGG 2 cut(s) 30, 147
PspN4I GGNNCC 3 cut(s) 107, 186, 255
PspPI GGNCC 3 cut(s) 61, 184, 448
PsuI RGATCY 3 cut(s) 73, 105, 432
RigI GGCCGGCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SacI GAGCTC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 73, 93, 105, 312, 432
Sau96I GGNCC 3 cut(s) 61, 184, 448
ScrFI CCNGG 3 cut(s) 32, 149, 437
SduI GDGCHC 1 cut(s) 241
SetI ASST 8 cut(s) 12, 85, 241, 307, 321, 453, 463, 482
SfaNI GCATC 2 cut(s) 46, 47
SfcI CTRYAG 1 cut(s) 486
SgrDI CGTCGACG 1 cut(s) 11
SinI GGWCC 2 cut(s) 184, 448
SphI GCATGC 1 cut(s) 123
Sse9I AATT 2 cut(s) 267, 443
SsiI CCGC 2 cut(s) 53, 59
SspMI CTAG 3 cut(s) 50, 302, 526
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 3 cut(s) 30, 147, 435
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 356, 487
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 267, 443
TfiI GAWTC 2 cut(s) 205, 426
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 359
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 461
TspRI CASTG 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 184, 448
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 3 cut(s) 50, 302, 526
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.