Rmu_sc0006555.1_g000002

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006555.1
OG0000336
Physical Location & Seq
Forward (+)
9102 .. 10440
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006555.1_g000002.1.cds

Sequence Viewer

Length: 951 bp
atggaggacgtcgatgaaatggtcgtttgtctggctgcatctctgggactggcagatgtacgatggccagtggatttgtggcccgcttgtggcgaagggttgcaccgctctcagatgtatctctttggaaaactgttaatggccataactttcaataagagggcttcggttgtcctagcaccatatgatggggttggagcgatcaaggatgtcccacttaccaccctagctttatggatcaaggtgcgtggattgccgctcgatttccacactgattgttgtcttcgaagaattggtagcgcaatgggtcattatgttcaaaagaacacaacggagttcaatgttgggagaatcctaatccgagttgaaatggatctggtgcaacctatcatcttccggcgtagcttaccttattttggaactccattgccggaggagatacaaaatgacccttccctagcacgacgaaatttggagcttgttctaaaccgggtagacgtgacaccacatgctggaccgatgttggtatttggggcacagactactctccaagtcggtttggagaaatttttgtcgactgctaagcttaacgtgaggaaggagatacgccgacgcaatgcagtgacttctcctagttgtggaatgtgccgaaagtgtgtacaggaggatgagatttctccaaagaagatgagattgagcttggcagttggaagaactaatctggatgccatgaaaatgggtttgtgcaatgtgaaaccgatcaaagaagtgtataagaagaggggtagggcgaaaggtgcaaagaacaagaccaaggagcttaacattgttcaagcttcccctatgaagaagtccctattaaagcggattaagactccaagaaaagaggagaaattggtgaatagcttgccggaattcaccataatcgacattgtcaatggttctaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

316

Amino Acids

35.41

Weight (kDa)

9.75

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB7I CCANNNNNTGG 2 cut(s) 188, 512
AccBSI CCGCTC 2 cut(s) 108, 259
AccI GTMKAC 2 cut(s) 495, 575
AciI CCGC 4 cut(s) 84, 106, 257, 865
AclWI GGATC 2 cut(s) 245, 381
AcoI YGGCCR 2 cut(s) 65, 141
AcsI RAATTY 3 cut(s) 469, 566, 914
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 60, 660
AfiI CCNNNNNNNGG 5 cut(s) 89, 188, 416, 512, 638
AgsI TTSAA 5 cut(s) 154, 320, 340, 368, 833
AjiI CACGTC 1 cut(s) 499
AluBI AGCT 8 cut(s) 230, 405, 478, 586, 699, 820, 836, 906
AluI AGCT 8 cut(s) 230, 405, 478, 586, 699, 820, 836, 906
AlwI GGATC 2 cut(s) 245, 381
AoxI GGCC 3 cut(s) 65, 80, 141
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 3 cut(s) 469, 566, 914
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 81, 515
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 910, 910
AsuII TTCGAA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 515
BaeGI GKGCMC 1 cut(s) 538
BalI TGGCCA 2 cut(s) 67, 143
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 57, 182
BcnI CCSGG 1 cut(s) 491
BfaI CTAG 4 cut(s) 176, 227, 458, 633
BisI GCNGC 2 cut(s) 36, 257
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 2 cut(s) 37, 258
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 515
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 2 cut(s) 81, 515
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 2 cut(s) 47, 715
BpiI GAAGAC 1 cut(s) 275
Bpu1102I GCTNAGC 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 813
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 188, 416, 512, 638
Bse1I ACTGG 2 cut(s) 54, 68
Bse3DI GCAATG 4 cut(s) 309, 425, 622, 754
BseDI CCNNGG 1 cut(s) 813
BseGI GGATG 3 cut(s) 214, 673, 730
BseLI CCNNNNNNNGG 5 cut(s) 89, 188, 416, 512, 638
BseMI GCAATG 4 cut(s) 309, 425, 622, 754
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 54, 68
BseRI GAGGAG 2 cut(s) 449, 902
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 67, 82, 143
BsiSI CCGG 4 cut(s) 397, 431, 490, 911
BslFI GGGAC 3 cut(s) 60, 197, 838
BslI CCNNNNNNNGG 5 cut(s) 89, 188, 416, 512, 638
BsmFI GGGAC 3 cut(s) 60, 197, 838
BsnI GGCC 3 cut(s) 67, 82, 143
Bsp119I TTCGAA 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 4 cut(s) 201, 237, 373, 759
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 4 cut(s) 84, 106, 257, 865
BspANI GGCC 3 cut(s) 67, 82, 143
BspCNI CTCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 245, 381
BspT104I TTCGAA 1 cut(s) 286
BsrBI CCGCTC 2 cut(s) 108, 259
BsrDI GCAATG 4 cut(s) 309, 425, 622, 754
BsrGI TGTACA 1 cut(s) 658
BsrI ACTGG 2 cut(s) 54, 68
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 4 cut(s) 201, 237, 373, 759
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 813
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 773
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 84, 908
BstDEI CTNAG 2 cut(s) 111, 582
BstF5I GGATG 3 cut(s) 214, 673, 730
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 4 cut(s) 204, 240, 376, 762
BstMBI GATC 4 cut(s) 201, 237, 373, 759
BstMWI GCNNNNNNNGC 2 cut(s) 253, 797
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 538
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 3 cut(s) 67, 82, 143
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 3 cut(s) 214, 673, 730
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 3 cut(s) 75, 270, 627
Cac8I GCNNGC 2 cut(s) 84, 908
CfoI GCGC 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 81, 515
CseI GACGC 1 cut(s) 621
Csp6I GTAC 2 cut(s) 59, 659
CspCI CAANNNNNGTGG 4 cut(s) 229, 257, 264, 292
CviAII CATG 2 cut(s) 509, 730
CviQI GTAC 2 cut(s) 59, 659
DdeI CTNAG 2 cut(s) 111, 582
DpnI GATC 4 cut(s) 203, 239, 375, 761
DpnII GATC 4 cut(s) 201, 237, 373, 759
EaeI YGGCCR 2 cut(s) 65, 141
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
Eco130I CCWWGG 1 cut(s) 813
Eco47I GGWCC 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 914
EcoT14I CCWWGG 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 2 cut(s) 512, 733
FaqI GGGAC 3 cut(s) 60, 197, 838
FatI CATG 2 cut(s) 508, 729
FauI CCCGC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 2 cut(s) 495, 575
Fnu4HI GCNGC 2 cut(s) 36, 257
FokI GGATG 3 cut(s) 221, 680, 737
Fsp4HI GCNGC 2 cut(s) 36, 257
FspBI CTAG 4 cut(s) 176, 227, 458, 633
GlaI GCGC 1 cut(s) 301
GluI GCNGC 2 cut(s) 36, 257
HaeIII GGCC 3 cut(s) 67, 82, 143
HapII CCGG 4 cut(s) 397, 431, 490, 911
HgaI GACGC 1 cut(s) 621
HhaI GCGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 512, 733
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 2 cut(s) 584, 834
HinfI GANTC 2 cut(s) 351, 874
HpaII CCGG 4 cut(s) 397, 431, 490, 911
HphI GGTGA 2 cut(s) 910, 910
Hpy166II GTNNAC 3 cut(s) 496, 576, 659
Hpy188I TCNGA 2 cut(s) 114, 362
Hpy188III TCNNGA 1 cut(s) 722
Hpy8I GTNNAC 3 cut(s) 496, 576, 659
Hpy99I CGWCG 3 cut(s) 14, 468, 615
HpyAV CCTTC 3 cut(s) 89, 462, 592
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 3 cut(s) 9, 498, 591
HpyCH4V TGCA 6 cut(s) 38, 103, 382, 620, 747, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 797
HpyF3I CTNAG 2 cut(s) 111, 582
HpySE526I ACGT 3 cut(s) 9, 498, 591
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 512, 733
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 4 cut(s) 201, 237, 373, 759
LmnI GCTCC 3 cut(s) 197, 475, 817
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 47, 715
MaeI CTAG 4 cut(s) 176, 227, 458, 633
MaeII ACGT 3 cut(s) 9, 498, 591
MaeIII GTNAC 2 cut(s) 499, 622
MalI GATC 4 cut(s) 203, 239, 375, 761
MbiI CCGCTC 2 cut(s) 108, 259
MboI GATC 4 cut(s) 201, 237, 373, 759
MboII GAAGA 7 cut(s) 275, 300, 385, 697, 723, 790, 859
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 538
MlsI TGGCCA 2 cut(s) 67, 143
MluCI AATT 5 cut(s) 291, 469, 566, 893, 914
MluNI TGGCCA 2 cut(s) 67, 143
MlyI GAGTC 1 cut(s) 868
MmeI TCCRAC 2 cut(s) 175, 688
MnlI CCTC 6 cut(s) 153, 427, 588, 658, 774, 880
Mox20I TGGCCA 2 cut(s) 67, 143
MscI TGGCCA 2 cut(s) 67, 143
MseI TTAA 5 cut(s) 137, 588, 822, 860, 870
MslI CAYNNNNRTG 1 cut(s) 734
Msp20I TGGCCA 2 cut(s) 67, 143
MspI CCGG 4 cut(s) 397, 431, 490, 911
MspR9I CCNGG 1 cut(s) 491
MwoI GCNNNNNNNGC 2 cut(s) 253, 797
NciI CCSGG 1 cut(s) 491
NdeI CATATG 1 cut(s) 184
NdeII GATC 4 cut(s) 201, 237, 373, 759
NlaIII CATG 2 cut(s) 512, 733
NmuCI GTSAC 2 cut(s) 499, 622
NspI RCATGY 1 cut(s) 512
NspV TTCGAA 1 cut(s) 286
PfeI GAWTC 1 cut(s) 351
PflFI GACNNNGTC 1 cut(s) 932
PflMI CCANNNNNTGG 2 cut(s) 188, 512
PkrI GCNGC 2 cut(s) 37, 258
PleI GAGTC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 868
PspPI GGNCC 2 cut(s) 81, 515
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 932
RsaI GTAC 2 cut(s) 60, 660
RsaNI GTAC 2 cut(s) 59, 659
RseI CAYNNNNRTG 1 cut(s) 734
SalI GTCGAC 1 cut(s) 574
SaqAI TTAA 5 cut(s) 137, 588, 822, 860, 870
SatI GCNGC 2 cut(s) 36, 257
Sau3AI GATC 4 cut(s) 201, 237, 373, 759
Sau96I GGNCC 2 cut(s) 81, 515
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 2 cut(s) 47, 715
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 734
Sse9I AATT 5 cut(s) 291, 469, 566, 893, 914
SsiI CCGC 4 cut(s) 84, 106, 257, 865
SspMI CTAG 4 cut(s) 176, 227, 458, 633
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 3 cut(s) 12, 501, 594
TaqI TCGA 5 cut(s) 12, 261, 286, 575, 927
TaqII GACCGA 1 cut(s) 532
TasI AATT 5 cut(s) 291, 469, 566, 893, 914
TatI WGTACW 1 cut(s) 658
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 5 cut(s) 137, 588, 822, 860, 870
Tru9I TTAA 5 cut(s) 137, 588, 822, 860, 870
TscAI CASTG 3 cut(s) 75, 277, 627
TseFI GTSAC 2 cut(s) 499, 622
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 499, 622
TspDTI ATGAA 3 cut(s) 30, 746, 860
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 3 cut(s) 75, 277, 627
Tth111I GACNNNGTC 1 cut(s) 932
Van91I CCANNNNNTGG 2 cut(s) 188, 512
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 3 cut(s) 469, 566, 914
XceI RCATGY 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XmiI GTMKAC 2 cut(s) 495, 575
XspI CTAG 4 cut(s) 176, 227, 458, 633
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.