Rh6AG089400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000336
Physical Location & Seq
Forward (+)
13233376 .. 13237466
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG089400.1

Sequence Viewer

Length: 378 bp
ATGGTGGCCGAGAATACTTGGCACTGGAAGCGGGATGAGGTAGATGGGGTGTCACTAAAAAAGCCTCGGTTGAGCCTAGCTGTGGGGAGGACAAGTCCTGATGCAGTGTCAATGGGGCTATCGAAACTGAAGAAGGTGCTTTCATCTCCAAAGAAGCGTGGTAGGCCAAAGGGTGCAAAGAACAAAACCAAGACTGAGGTCAAGATTGTGAACACTTCACCTATGAAGAAAGTCAAGGTGTTAAAGAGGATGGAGAAGTTGGTAAACGAATTGCTTGTGTTTACTGGTCCTGTTGATGTTGGTACCTCTATCCTTGAAAAAAGGGAAGGAGGTAACCAAAGTCGACTCACTAGCACGCTTGACCCCGGTGACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.78

Weight (kDa)

10.32

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 343
AciI CCGC 1 cut(s) 31
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AoxI GGCC 2 cut(s) 6, 164
Asp718I GGTACC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 302
BccI CCATC 2 cut(s) 38, 244
BcnI CCSGG 1 cut(s) 366
BfaI CTAG 2 cut(s) 77, 351
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 65, 364
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 29, 289
BseDI CCNNGG 2 cut(s) 65, 364
BseGI GGATG 2 cut(s) 40, 255
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 2 cut(s) 29, 289
BshFI GGCC 2 cut(s) 8, 166
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 82
BsnI GGCC 2 cut(s) 8, 166
BspACI CCGC 1 cut(s) 31
BspANI GGCC 2 cut(s) 8, 166
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 29, 289
BssECI CCNNGG 2 cut(s) 65, 364
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 195
BstEII GGTNACC 2 cut(s) 332, 368
BstF5I GGATG 2 cut(s) 40, 255
BstMWI GCNNNNNNNGC 2 cut(s) 28, 163
BstPAI GACNNNNGTC 1 cut(s) 197
BstPI GGTNACC 2 cut(s) 332, 368
BstSCI CCNGG 1 cut(s) 364
BsuRI GGCC 2 cut(s) 8, 166
BtsCI GGATG 2 cut(s) 40, 255
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 22, 111
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 303
CviJI RGCY 6 cut(s) 8, 64, 75, 80, 118, 166
CviKI_1 RGCY 6 cut(s) 8, 64, 75, 80, 118, 166
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 149
Eco91I GGTNACC 2 cut(s) 332, 368
EcoO65I GGTNACC 2 cut(s) 332, 368
FaiI YATR 2 cut(s) 224, 376
FauI CCCGC 1 cut(s) 24
FblI GTMKAC 1 cut(s) 343
FokI GGATG 2 cut(s) 47, 262
FspBI CTAG 2 cut(s) 77, 351
HaeIII GGCC 2 cut(s) 8, 166
HapII CCGG 1 cut(s) 366
HincII GTYRAC 1 cut(s) 344
HindII GTYRAC 1 cut(s) 344
HinfI GANTC 1 cut(s) 345
HpaII CCGG 1 cut(s) 366
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 4 cut(s) 211, 265, 282, 344
Hpy188III TCNNGA 2 cut(s) 98, 202
Hpy8I GTNNAC 4 cut(s) 211, 265, 282, 344
HpyAV CCTTC 2 cut(s) 127, 320
HpyCH4V TGCA 2 cut(s) 104, 176
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 163
HpyF3I CTNAG 1 cut(s) 195
KpnI GGTACC 1 cut(s) 306
LpnPI CCDG 4 cut(s) 10, 111, 270, 303
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 77, 351
MaeIII GTNAC 3 cut(s) 51, 332, 368
MboII GAAGA 2 cut(s) 142, 238
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 7 cut(s) 31, 75, 81, 190, 240, 316, 323
MseI TTAA 1 cut(s) 242
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 28, 163
NciI CCSGG 1 cut(s) 366
NlaIV GGNNCC 1 cut(s) 304
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 2 cut(s) 51, 368
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PshAI GACNNNNGTC 1 cut(s) 197
PspEI GGTNACC 2 cut(s) 332, 368
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SalI GTCGAC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 366
SetI ASST 9 cut(s) 42, 82, 138, 201, 223, 240, 308, 334, 375
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 287
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 31
SspMI CTAG 2 cut(s) 77, 351
StyD4I CCNGG 1 cut(s) 364
TaqI TCGA 2 cut(s) 122, 343
TasI AATT 1 cut(s) 269
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 2 cut(s) 29, 111
TseFI GTSAC 2 cut(s) 51, 368
Tsp45I GTSAC 2 cut(s) 51, 368
TspDTI ATGAA 2 cut(s) 132, 239
TspRI CASTG 2 cut(s) 29, 111
VpaK11BI GGWCC 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 343
XspI CTAG 2 cut(s) 77, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.