Rmu_sc0003221.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003221.1
OG0000336
Physical Location & Seq
Forward (+)
5094 .. 6452
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003221.1_g000001.1.cds

Sequence Viewer

Length: 1359 bp
atggaggaggtggatgagatggctgtccgactggctgcctctcttggactggcagatgtgcgtaggccggtggatctgcggccggctcgtggcgaagggttgcggcgttcgcagacgtatctggtggggaagctgctgacggctagggcttttaacaaaagatcgttcatgggcatgttccgtcgtgcatggagattgaatggacggtacactgctcaggaacatggagaccgatttctgttcaccttgacggatccaactgaccgcaaccggattcttcgcggtggtccttggggttttgacagagctccggttgtcctggcaccttatgatggagtgggagcgattaaggatgtcccgctctccaccatagccttctggatcaaggtacgtgggctgccaccggactttcataccgatcggtgcttgaggagaattggcagtgctttggggcggtttctgcagaaagatataacagagtttggagagggaaggattcggatccgggttgagatggatcttctgcagcctgtgattttccgtcgttgcttcacggtggatgatgggattgatgtagatctcgatttcttcttcgaaaatctctatggaagatgtcaagattgtggtttgcttactcatgtgggtttaccgtgtgctgggccgcccttgccggcggaggtcaggagtgaacagtcgccggtatggcgaaatcttgacagggtgttgagccgtgtggatgtgtctcctcatgtgggatcaatggtgttcggagctcagctgagtccacaggttggactcgagaggtttctgccaatagctaaaccaaaagggaggaaggaaatcaagcgcaagattattaccgatggtggtgcgggcagttctggagtcaaaaaggcacctgtgcctgagctggtggagactggtagtgacccagcttcgggtggtccacggcaggagccgattggcagtggtaggtctgtggagaaggagatgctggaggccgctccgagttgtggtatgcgtcggaaacgtgtggatgaagagggtagctctcccaaaaagctacgcctaagtctagcagtaggtcggcccaatttggatgttatgacaatgggattgtgtcctgtgaaacctatgcaggaagtatacaaaaaaaggccgggaaggccaaagggggcaaagaataaggcaagggagcctaaggtcgtgcatgcttcccctatgaaaaagtcaccgacaaaaaaggtcaagactcataggaaagaggagaaattggtgaatggtttaccggaattcaccgtggtggaagcagttcatggttccgacccatcaaagggtaaggagccaatagttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

452

Amino Acids

50.12

Weight (kDa)

9.94

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 322, 895
AccB7I CCANNNNNTGG 1 cut(s) 791
AccBSI CCGCTC 2 cut(s) 361, 1004
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 1 cut(s) 282
AclWI GGATC 8 cut(s) 81, 248, 261, 389, 496, 509, 525, 763
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 1 cut(s) 1292
AfaI GTAC 2 cut(s) 209, 390
AflIII ACRYGT 1 cut(s) 1030
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 318
AleI CACNNNNGTG 1 cut(s) 1301
AluBI AGCT 9 cut(s) 133, 308, 773, 778, 818, 910, 935, 1050, 1063
AluI AGCT 9 cut(s) 133, 308, 773, 778, 818, 910, 935, 1050, 1063
Alw21I GWGCWC 2 cut(s) 310, 775
Alw26I GTCTC 3 cut(s) 222, 747, 911
AlwI GGATC 8 cut(s) 81, 248, 261, 389, 496, 509, 525, 763
Ama87I CYCGRG 1 cut(s) 797
AoxI GGCC 7 cut(s) 65, 80, 659, 999, 1088, 1157, 1166
ApeKI GCWGC 4 cut(s) 35, 133, 397, 526
ApoI RAATTY 1 cut(s) 1292
Asp700I GAANNNNTTC 1 cut(s) 1311
AspLEI GCGC 1 cut(s) 849
AspS9I GGNCC 4 cut(s) 287, 659, 944, 1089
AsuC2I CCSGG 2 cut(s) 506, 1161
AsuHPI GGTGA 4 cut(s) 235, 1224, 1288, 1288
AsuII TTCGAA 1 cut(s) 594
AvaI CYCGRG 1 cut(s) 797
AvaII GGWCC 2 cut(s) 287, 944
AxyI CCTNAGG 1 cut(s) 1200
BamHI GGATCC 2 cut(s) 253, 501
BanI GGYRCC 2 cut(s) 322, 895
BanII GRGCYC 2 cut(s) 310, 775
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 310, 775
BbvI GCAGC 4 cut(s) 22, 120, 384, 538
BccI CCATC 6 cut(s) 13, 326, 508, 557, 857, 1336
BceAI ACGGC 3 cut(s) 156, 714, 965
BcgI CGANNNNNNTGC 2 cut(s) 851, 885
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 2 cut(s) 506, 1161
BcoDI GTCTC 3 cut(s) 222, 747, 911
BfaI CTAG 2 cut(s) 144, 1076
BfmI CTRYAG 2 cut(s) 461, 524
BglI GCCNNNNNGGC 2 cut(s) 703, 1165
BglII AGATCT 1 cut(s) 577
BisI GCNGC 8 cut(s) 36, 80, 104, 134, 398, 527, 662, 1002
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 8 cut(s) 37, 81, 105, 135, 399, 528, 663, 1003
Bme1390I CCNGG 3 cut(s) 320, 506, 1161
Bme18I GGWCC 2 cut(s) 287, 944
BmeT110I CYCGRG 1 cut(s) 797
BmgT120I GGNCC 4 cut(s) 287, 659, 944, 1089
BmiI GGNNCC 8 cut(s) 255, 324, 503, 897, 957, 1197, 1321, 1344
BmrFI CCNGG 3 cut(s) 320, 506, 1161
BmsI GCATC 1 cut(s) 981
BplI GAGNNNNNCTC 2 cut(s) 1034, 1066
BpmI CTGGAG 2 cut(s) 903, 1016
Bpu10I CCTNAGC 2 cut(s) 216, 906
Bpu1102I GCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 2 cut(s) 506, 1161
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 2 cut(s) 500, 576
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 290, 947, 1299
BsaWI WCCGGW 4 cut(s) 270, 310, 403, 1288
Bse118I RCCGGY 4 cut(s) 67, 82, 670, 697
Bse1I ACTGG 3 cut(s) 36, 54, 925
Bse21I CCTNAGG 1 cut(s) 1200
Bse8I GATNNNNATC 2 cut(s) 500, 576
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 3 cut(s) 290, 947, 1299
BseGI GGATG 6 cut(s) 19, 358, 565, 742, 1042, 1105
BseJI GATNNNNATC 2 cut(s) 500, 576
BseMII CTCAG 4 cut(s) 230, 770, 788, 897
BseNI ACTGG 3 cut(s) 36, 54, 925
BseRI GAGGAG 4 cut(s) 20, 445, 735, 1280
BseX3I CGGCCG 1 cut(s) 80
BseXI GCAGC 4 cut(s) 22, 120, 384, 538
BseYI CCCAGC 2 cut(s) 656, 931
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 2 cut(s) 83, 421
BshFI GGCC 7 cut(s) 67, 82, 661, 1001, 1090, 1159, 1168
BshNI GGYRCC 2 cut(s) 322, 895
BsiEI CGRYCG 2 cut(s) 83, 421
BsiHKAI GWGCWC 2 cut(s) 310, 775
BsiHKCI CYCGRG 1 cut(s) 797
BslFI GGGAC 1 cut(s) 341
BsmAI GTCTC 3 cut(s) 222, 747, 911
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 7 cut(s) 67, 82, 661, 1001, 1090, 1159, 1168
Bso31I GGTCTC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 797
Bsp119I TTCGAA 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 310, 775
Bsp143I GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
Bsp1720I GCTNAGC 1 cut(s) 774
BspANI GGCC 7 cut(s) 67, 82, 661, 1001, 1090, 1159, 1168
BspCNI CTCAG 4 cut(s) 229, 771, 787, 898
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 8 cut(s) 255, 324, 503, 897, 957, 1197, 1321, 1344
BspMAI CTGCAG 2 cut(s) 465, 528
BspPI GGATC 8 cut(s) 81, 248, 261, 389, 496, 509, 525, 763
BspT104I TTCGAA 1 cut(s) 594
BspT107I GGYRCC 2 cut(s) 322, 895
BspTNI GGTCTC 1 cut(s) 222
BsrBI CCGCTC 2 cut(s) 361, 1004
BsrFI RCCGGY 4 cut(s) 67, 82, 670, 697
BsrI ACTGG 3 cut(s) 36, 54, 925
BssAI RCCGGY 4 cut(s) 67, 82, 670, 697
BssECI CCNNGG 3 cut(s) 290, 947, 1299
BssMI GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
BssNAI GTATAC 1 cut(s) 1147
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 1147
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 5 cut(s) 207, 556, 651, 693, 1300
Bst6I CTCTTC 1 cut(s) 1035
BstBAI YACGTR 1 cut(s) 392
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 4 cut(s) 84, 672, 874, 1212
BstDEI CTNAG 6 cut(s) 216, 774, 779, 906, 1070, 1200
BstDSI CCRYGG 2 cut(s) 947, 1299
BstF5I GGATG 6 cut(s) 19, 358, 565, 742, 1042, 1105
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 849
BstKTI GATC 9 cut(s) 76, 164, 256, 384, 421, 504, 520, 580, 758
BstMAI GTCTC 3 cut(s) 222, 747, 911
BstMBI GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
BstMCI CGRYCG 2 cut(s) 83, 421
BstMWI GCNNNNNNNGC 5 cut(s) 109, 460, 667, 703, 1165
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 178, 1214
BstSCI CCNGG 3 cut(s) 318, 504, 1159
BstSFI CTRYAG 2 cut(s) 461, 524
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 4 cut(s) 22, 120, 384, 538
BstX2I RGATCY 5 cut(s) 73, 253, 501, 517, 577
BstYI RGATCY 5 cut(s) 73, 253, 501, 517, 577
BstZ17I GTATAC 1 cut(s) 1147
BstZI CGGCCG 1 cut(s) 80
Bsu36I CCTNAGG 1 cut(s) 1200
BsuRI GGCC 7 cut(s) 67, 82, 661, 1001, 1090, 1159, 1168
BtgI CCRYGG 2 cut(s) 947, 1299
BtsCI GGATG 6 cut(s) 19, 358, 565, 742, 1042, 1105
BtsI GCAGTG 3 cut(s) 210, 448, 973
BtsIMutI CAGTG 3 cut(s) 210, 448, 973
Cac8I GCNNGC 4 cut(s) 84, 672, 874, 1212
CfoI GCGC 1 cut(s) 849
Cfr10I RCCGGY 4 cut(s) 67, 82, 670, 697
Cfr13I GGNCC 4 cut(s) 287, 659, 944, 1089
CseI GACGC 1 cut(s) 1010
Csp6I GTAC 2 cut(s) 208, 389
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 8 cut(s) 169, 175, 189, 224, 638, 749, 1211, 1316
CviQI GTAC 2 cut(s) 208, 389
DdeI CTNAG 6 cut(s) 216, 774, 779, 906, 1070, 1200
DpnI GATC 9 cut(s) 75, 163, 255, 383, 420, 503, 519, 579, 757
DpnII GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
EaeI YGGCCR 1 cut(s) 80
EagI CGGCCG 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
EciI GGCGGA 1 cut(s) 689
Ecl136II GAGCTC 2 cut(s) 308, 773
EclXI CGGCCG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 290
Eco24I GRGCYC 2 cut(s) 310, 775
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 287, 944
Eco52I CGGCCG 1 cut(s) 80
Eco53kI GAGCTC 2 cut(s) 308, 773
Eco81I CCTNAGG 1 cut(s) 1200
Eco88I CYCGRG 1 cut(s) 797
EcoICRI GAGCTC 2 cut(s) 308, 773
EcoRI GAATTC 1 cut(s) 1292
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 290
EcoT38I GRGCYC 2 cut(s) 310, 775
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 8 cut(s) 172, 178, 192, 227, 641, 752, 1214, 1319
FaqI GGGAC 1 cut(s) 341
FatI CATG 8 cut(s) 168, 174, 188, 223, 637, 748, 1210, 1315
FauI CCCGC 2 cut(s) 366, 865
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 8 cut(s) 36, 80, 104, 134, 398, 527, 662, 1002
FokI GGATG 6 cut(s) 26, 365, 572, 749, 1049, 1112
FriOI GRGCYC 2 cut(s) 310, 775
Fsp4HI GCNGC 8 cut(s) 36, 80, 104, 134, 398, 527, 662, 1002
FspBI CTAG 2 cut(s) 144, 1076
GlaI GCGC 1 cut(s) 848
GluI GCNGC 8 cut(s) 36, 80, 104, 134, 398, 527, 662, 1002
GsaI CCCAGC 2 cut(s) 660, 935
GsuI CTGGAG 2 cut(s) 903, 1016
HaeIII GGCC 7 cut(s) 67, 82, 661, 1001, 1090, 1159, 1168
HgaI GACGC 1 cut(s) 1010
HhaI GCGC 1 cut(s) 849
Hin1II CATG 8 cut(s) 172, 178, 192, 227, 641, 752, 1214, 1319
Hin6I GCGC 1 cut(s) 847
HinP1I GCGC 1 cut(s) 847
HinfI GANTC 6 cut(s) 274, 496, 781, 795, 885, 1252
HphI GGTGA 4 cut(s) 235, 1224, 1288, 1288
Hpy166II GTNNAC 8 cut(s) 210, 243, 647, 689, 785, 947, 1147, 1286
Hpy188I TCNGA 6 cut(s) 29, 501, 770, 1008, 1026, 1324
Hpy188III TCNNGA 9 cut(s) 218, 379, 581, 617, 682, 713, 799, 882, 1249
Hpy8I GTNNAC 8 cut(s) 210, 243, 647, 689, 785, 947, 1147, 1286
Hpy99I CGWCG 3 cut(s) 186, 546, 1026
HpyAV CCTTC 6 cut(s) 89, 385, 486, 829, 979, 1158
HpyCH4III ACNGT 5 cut(s) 207, 556, 651, 693, 1300
HpyCH4IV ACGT 3 cut(s) 116, 391, 1030
HpyCH4V TGCA 5 cut(s) 188, 463, 526, 1138, 1210
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 460, 667, 703, 1165
HpyF3I CTNAG 6 cut(s) 216, 774, 779, 906, 1070, 1200
HpySE526I ACGT 3 cut(s) 116, 391, 1030
Hsp92II CATG 8 cut(s) 172, 178, 192, 227, 641, 752, 1214, 1319
HspAI GCGC 1 cut(s) 847
KroI GCCGGC 2 cut(s) 82, 670
KroNI GCCGGC 2 cut(s) 84, 672
Kzo9I GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
LmnI GCTCC 7 cut(s) 313, 341, 770, 955, 1009, 1195, 1342
Lsp1109I GCAGC 4 cut(s) 22, 120, 384, 538
LweI GCATC 1 cut(s) 981
MaeI CTAG 2 cut(s) 144, 1076
MaeII ACGT 3 cut(s) 116, 391, 1030
MaeIII GTNAC 2 cut(s) 926, 1230
MalI GATC 9 cut(s) 75, 163, 255, 383, 420, 503, 519, 579, 757
MbiI CCGCTC 2 cut(s) 361, 1004
MboI GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
MboII GAAGA 6 cut(s) 269, 512, 580, 583, 621, 1052
MflI RGATCY 5 cut(s) 73, 253, 501, 517, 577
MhlI GDGCHC 2 cut(s) 310, 775
MluCI AATT 4 cut(s) 435, 1093, 1271, 1292
MlyI GAGTC 4 cut(s) 789, 790, 894, 1246
MmeI TCCRAC 5 cut(s) 52, 281, 772, 1004, 1347
MroNI GCCGGC 2 cut(s) 82, 670
MroXI GAANNNNTTC 1 cut(s) 1311
MseI TTAA 2 cut(s) 153, 348
MslI CAYNNNNRTG 2 cut(s) 173, 1301
MspA1I CMGCKG 1 cut(s) 778
MspR9I CCNGG 3 cut(s) 320, 506, 1161
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 5 cut(s) 109, 460, 667, 703, 1165
NaeI GCCGGC 2 cut(s) 84, 672
NciI CCSGG 2 cut(s) 506, 1161
NdeII GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
NgoMIV GCCGGC 2 cut(s) 82, 670
NlaIII CATG 8 cut(s) 172, 178, 192, 227, 641, 752, 1214, 1319
NlaIV GGNNCC 8 cut(s) 255, 324, 503, 897, 957, 1197, 1321, 1344
NmuCI GTSAC 2 cut(s) 926, 1230
NspI RCATGY 2 cut(s) 178, 1214
NspV TTCGAA 1 cut(s) 594
OliI CACNNNNGTG 1 cut(s) 1301
PaeI GCATGC 1 cut(s) 1214
PaeR7I CTCGAG 1 cut(s) 797
PdiI GCCGGC 2 cut(s) 84, 672
PdmI GAANNNNTTC 1 cut(s) 1311
PfeI GAWTC 2 cut(s) 274, 496
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 8 cut(s) 37, 81, 105, 135, 399, 528, 663, 1003
Ple19I CGATCG 1 cut(s) 421
PleI GAGTC 4 cut(s) 789, 789, 893, 1246
PpsI GAGTC 4 cut(s) 789, 789, 893, 1246
Ppu21I YACGTR 1 cut(s) 392
Psp124BI GAGCTC 2 cut(s) 310, 775
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 2 cut(s) 656, 931
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 8 cut(s) 255, 324, 503, 897, 957, 1197, 1321, 1344
PspPI GGNCC 4 cut(s) 287, 659, 944, 1089
PstI CTGCAG 2 cut(s) 465, 528
PsuI RGATCY 5 cut(s) 73, 253, 501, 517, 577
PvuI CGATCG 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 778
RsaI GTAC 2 cut(s) 209, 390
RsaNI GTAC 2 cut(s) 208, 389
RseI CAYNNNNRTG 2 cut(s) 173, 1301
SacI GAGCTC 2 cut(s) 310, 775
SaqAI TTAA 2 cut(s) 153, 348
SatI GCNGC 8 cut(s) 36, 80, 104, 134, 398, 527, 662, 1002
Sau3AI GATC 9 cut(s) 73, 161, 253, 381, 418, 501, 517, 577, 755
Sau96I GGNCC 4 cut(s) 287, 659, 944, 1089
SchI GAGTC 4 cut(s) 789, 790, 894, 1246
ScrFI CCNGG 3 cut(s) 320, 506, 1161
SduI GDGCHC 2 cut(s) 310, 775
SfaNI GCATC 1 cut(s) 981
SfcI CTRYAG 2 cut(s) 461, 524
SfiI GGCCNNNNNGGCC 1 cut(s) 1165
Sfr274I CTCGAG 1 cut(s) 797
SfuI TTCGAA 1 cut(s) 594
SinI GGWCC 2 cut(s) 287, 944
SlaI CTCGAG 1 cut(s) 797
SmiMI CAYNNNNRTG 2 cut(s) 173, 1301
SmlI CTYRAG 2 cut(s) 427, 797
SmoI CTYRAG 2 cut(s) 427, 797
SphI GCATGC 1 cut(s) 1214
Sse9I AATT 4 cut(s) 435, 1093, 1271, 1292
SspMI CTAG 2 cut(s) 144, 1076
SstI GAGCTC 2 cut(s) 310, 775
StyD4I CCNGG 3 cut(s) 318, 504, 1159
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 5 cut(s) 207, 556, 651, 693, 1300
TaiI ACGT 3 cut(s) 119, 394, 1033
TaqI TCGA 3 cut(s) 582, 594, 798
TaqII GACCGA 1 cut(s) 246
TasI AATT 4 cut(s) 435, 1093, 1271, 1292
TauI GCSGC 4 cut(s) 82, 106, 664, 1004
TfiI GAWTC 2 cut(s) 274, 496
Tru1I TTAA 2 cut(s) 153, 348
Tru9I TTAA 2 cut(s) 153, 348
TscAI CASTG 3 cut(s) 217, 448, 973
TseFI GTSAC 2 cut(s) 926, 1230
TseI GCWGC 4 cut(s) 35, 133, 397, 526
Tsp45I GTSAC 2 cut(s) 926, 1230
TspDTI ATGAA 5 cut(s) 157, 401, 1053, 1238, 1304
TspGWI ACGGA 3 cut(s) 170, 266, 530
TspRI CASTG 3 cut(s) 217, 448, 973
Van91I CCANNNNNTGG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 287, 944
XapI RAATTY 1 cut(s) 1292
XceI RCATGY 2 cut(s) 178, 1214
XhoI CTCGAG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 1146
XmnI GAANNNNTTC 1 cut(s) 1311
XspI CTAG 2 cut(s) 144, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.