Rh3BG142300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000336
Physical Location & Seq
Reverse (-)
12050298 .. 12050741
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG142300.1

Sequence Viewer

Length: 444 bp
ATGATAGTGGCCAAGGACAGGATAGAAAGCCAAGATGGTGGAAATGGATCAACGGCAGGGGAAGCTAAGGATAGACATGATATAGTGGTGGAAACAACGACTGCATCTGGTCTAGTTATGATTGAGGAGGCTGGTGGACAAGTGGTGCAGTCAGTGGTCGCTCCAACAGTAATGCACAGTTGTGGAGTGTGCAGGAAGAGAACAGAGGAGGATGGGGTGTCGCCAAAGAAGCTGCATCTCAGCCTCGCTGTGGGCAGAACCAACCTAGATGCTATATCAATGGGCTTGTTTGCTATGAAGCTAGTACATGAGGCACCCAAGAAACGGGGTAGACCGAAAGGAGCAAAAAATAAAAGTAAGCCAGAGATCAAAGTTGTCCAAATGTTGCCAATGAAGTACTCACGGGCGAAGCGAGTCAAAGCTCCAGAAAAGTGGAAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.89

Weight (kDa)

9.88

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 331
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 9
AfaI GTAC 2 cut(s) 306, 398
AfiI CCNNNNNNNGG 3 cut(s) 18, 250, 324
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 4 cut(s) 65, 232, 301, 422
AluI AGCT 4 cut(s) 65, 232, 301, 422
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 11
BanI GGYRCC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 29, 206
BceAI ACGGC 1 cut(s) 69
BfaI CTAG 3 cut(s) 113, 266, 302
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BmcAI AGTACT 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 315
BmsI GCATC 3 cut(s) 113, 244, 259
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 250, 324
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 18, 250, 324
BseMII CTCAG 1 cut(s) 253
BseRI GAGGAG 2 cut(s) 140, 221
BseXI GCAGC 1 cut(s) 219
BsgI GTGCAG 2 cut(s) 167, 211
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 18, 250, 324
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 47, 366
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 47, 366
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 169, 179
Bst6I CTCTTC 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 66, 239
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 50, 369
BstMBI GATC 2 cut(s) 47, 366
BstMWI GCNNNNNNNGC 2 cut(s) 62, 229
BstV1I GCAGC 1 cut(s) 219
BstXI CCANNNNNNTGG 2 cut(s) 38, 432
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 159
Csp6I GTAC 2 cut(s) 305, 397
CviAII CATG 2 cut(s) 77, 308
CviQI GTAC 2 cut(s) 305, 397
DdeI CTNAG 2 cut(s) 66, 239
DpnI GATC 2 cut(s) 49, 368
DpnII GATC 2 cut(s) 47, 366
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 80, 311
FaiI YATR 6 cut(s) 78, 83, 119, 275, 296, 309
FatI CATG 2 cut(s) 76, 307
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 3 cut(s) 113, 266, 302
GluI GCNGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 1 cut(s) 11
Hin1II CATG 2 cut(s) 80, 311
HinfI GANTC 1 cut(s) 414
Hpy166II GTNNAC 2 cut(s) 137, 332
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 2 cut(s) 137, 332
HpyCH4III ACNGT 2 cut(s) 169, 179
HpyCH4V TGCA 5 cut(s) 104, 148, 175, 192, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 229
HpyF3I CTNAG 2 cut(s) 66, 239
Hsp92II CATG 2 cut(s) 80, 311
Kzo9I GATC 2 cut(s) 47, 366
LmnI GCTCC 3 cut(s) 166, 341, 427
LpnPI CCDG 7 cut(s) 4, 42, 93, 117, 178, 375, 438
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 3 cut(s) 113, 244, 259
MaeI CTAG 3 cut(s) 113, 266, 302
MalI GATC 2 cut(s) 49, 368
MboI GATC 2 cut(s) 47, 366
MboII GAAGA 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 6 cut(s) 118, 121, 199, 202, 254, 304
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 62, 229
NdeII GATC 2 cut(s) 47, 366
NlaIII CATG 2 cut(s) 80, 311
NlaIV GGNNCC 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 315
RsaI GTAC 2 cut(s) 306, 398
RsaNI GTAC 2 cut(s) 305, 397
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 2 cut(s) 47, 366
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 423
SetI ASST 6 cut(s) 67, 234, 267, 303, 424, 442
SfaNI GCATC 3 cut(s) 113, 244, 259
SmiMI CAYNNNNRTG 1 cut(s) 180
SspMI CTAG 3 cut(s) 113, 266, 302
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 169, 179
TaqII GACCGA 1 cut(s) 349
TatI WGTACW 2 cut(s) 304, 396
TscAI CASTG 1 cut(s) 159
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 311, 407
TspRI CASTG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 331
XspI CTAG 3 cut(s) 113, 266, 302
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.