Rh2AG361100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000336
Physical Location & Seq
Forward (+)
53502132 .. 53503040
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG361100.1

Sequence Viewer

Length: 303 bp
ATGAAGAATGCTAACAAGGCCAGGATCGAATCTGTTGAGGCTGAACCGGAAAGTACGGATCAGCAGGGAGTTAGGCTGTTGAAGGAAGCTGAGGTTTGTTCGGCGGCTATAGTACCAGTGGGGACGGATTTGTTTCCAGCTGAAGATGAATCAACTCAGGCAGCTGCAATAAACAAAGCTGAGGAAACGATAGATAACATGGCTTTGGAGAAGTCTACAACTGCAAGTACAAAGTCAGTAATAAAGCCAGTGATTTATCTGCGTCGGAAAATTATTGACGACAATGGAGTGTCACCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.79

Weight (kDa)

4.85

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 215
AciI CCGC 1 cut(s) 104
AclWI GGATC 2 cut(s) 32, 66
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 3 cut(s) 55, 114, 229
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 4 cut(s) 89, 140, 164, 179
AluI AGCT 4 cut(s) 89, 140, 164, 179
AlwI GGATC 2 cut(s) 32, 66
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 161, 164
AsuHPI GGTGA 1 cut(s) 285
BbvCI CCTCAGC 2 cut(s) 90, 180
BbvI GCAGC 2 cut(s) 151, 173
BciT130I CCWGG 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 3 cut(s) 105, 162, 165
BlsI GCNGC 3 cut(s) 106, 163, 166
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
Bpu10I CCTNAGC 2 cut(s) 90, 180
BsaWI WCCGGW 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 116, 248
BseBI CCWGG 1 cut(s) 22
BseMII CTCAG 3 cut(s) 81, 170, 171
BseNI ACTGG 2 cut(s) 116, 248
BseXI GCAGC 2 cut(s) 151, 173
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 24, 58
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 3 cut(s) 82, 169, 172
BspPI GGATC 2 cut(s) 32, 66
BsrI ACTGG 2 cut(s) 116, 248
BssMI GATC 2 cut(s) 24, 58
Bst2UI CCWGG 1 cut(s) 22
BstDEI CTNAG 4 cut(s) 90, 156, 180, 297
BstKTI GATC 2 cut(s) 27, 61
BstMBI GATC 2 cut(s) 24, 58
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 151, 173
BsuRI GGCC 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 123, 255
CseI GACGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 54, 113, 228
CviAII CATG 1 cut(s) 199
CviQI GTAC 3 cut(s) 54, 113, 228
DdeI CTNAG 4 cut(s) 90, 156, 180, 297
DpnI GATC 2 cut(s) 26, 60
DpnII GATC 2 cut(s) 24, 58
Eco57I CTGAAG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 202
FaiI YATR 2 cut(s) 110, 200
FaqI GGGAC 1 cut(s) 136
FatI CATG 1 cut(s) 198
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 105, 162, 165
Fsp4HI GCNGC 3 cut(s) 105, 162, 165
GluI GCNGC 3 cut(s) 105, 162, 165
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 251
Hin1II CATG 1 cut(s) 202
HinfI GANTC 2 cut(s) 29, 149
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 267
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 167, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 4 cut(s) 90, 156, 180, 297
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 24, 58
LpnPI CCDG 8 cut(s) 7, 34, 50, 60, 129, 143, 150, 261
Lsp1109I GCAGC 2 cut(s) 151, 173
MaeIII GTNAC 1 cut(s) 291
MalI GATC 2 cut(s) 26, 60
MboI GATC 2 cut(s) 24, 58
MboII GAAGA 2 cut(s) 16, 155
MluCI AATT 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 31, 85, 175
MspA1I CMGCKG 2 cut(s) 140, 164
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 2 cut(s) 24, 58
NlaIII CATG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 291
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 29, 149
PkrI GCNGC 3 cut(s) 106, 163, 166
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PvuII CAGCTG 2 cut(s) 140, 164
RsaI GTAC 3 cut(s) 55, 114, 229
RsaNI GTAC 3 cut(s) 54, 113, 228
SatI GCNGC 3 cut(s) 105, 162, 165
Sau3AI GATC 2 cut(s) 24, 58
ScrFI CCNGG 1 cut(s) 22
SetI ASST 6 cut(s) 91, 96, 142, 166, 181, 298
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 270
SsiI CCGC 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 20
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 270
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 29, 149
TscAI CASTG 2 cut(s) 123, 255
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 2 cut(s) 161, 164
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 17, 162
TspGWI ACGGA 2 cut(s) 71, 140
TspRI CASTG 2 cut(s) 123, 255
XmiI GTMKAC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.