Rorug01G0035000

Histidinol-phosphate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
5938994 .. 5941010
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0035000.1

Sequence Viewer

Length: 669 bp
ATGAAAGAGGAAGGGGACAAATCAGAATCCGTACATGCTTCATGTCCTGGCTTTGGAAAGCATATTATCTCTAAAATTCGCCGCAAAGCAACGTCGAAGTTGTTGGAACACATCAAGAAGATTGTGTTACAGAATCCCATAGAGTGCCTTCCACTATTCAAAGTAGAACTTGAAAAACTCATCGCTGCCTTTACCGAGTATGGGATTGATCCTTCACCATTAAAGGTCAAGGTTGACAAGCTCATGATGGATATTGCTAATTACAATTCCATGCAGTCTGCTTGCTCCGGGAAGATAGCTCCAGAGGTACAGCATCAGCGGTTGGCTGACAATAAATCTCGTCTTGACAGAGCCTTTAATCTTCAAACAGCTGAAAAATGTCACTATGAATCGCTACTTGACTTCCTAGCCTCTTCAGAGAATCGTAGAGAGAAGCTGAAAAGAGAGCAAGAACGATTGGAGGAGCGGATAGACAAGCTTCGTGTTTCCATCTCAGGAAGTGAGTTAAAGATAGCTGAACATAAAAATGCAGTTGATCGGTTGCTGAAACAGAAAGTCGAAATTTCAAACACTCCCGTATTGACTTCTAAAGATGCTAAAACTTTGAAGAATCTGAAAGATTCACTCGAGGGTCAGTGCAAAGGCTTCAAGGACTTTACTTTGAGGTGA

Protein Analysis

222

Amino Acids

25.3

Weight (kDa)

9.25

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 466
AciI CCGC 3 cut(s) 82, 319, 466
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 2 cut(s) 75, 561
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 2 cut(s) 33, 309
AfiI CCNNNNNNNGG 2 cut(s) 53, 201
AgsI TTSAA 6 cut(s) 160, 173, 365, 567, 607, 649
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 241, 299, 371, 436, 478, 515
AluI AGCT 6 cut(s) 241, 299, 371, 436, 478, 515
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 626
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 75, 561
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 626
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 241, 497
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 407
BisI GCNGC 2 cut(s) 82, 186
BlsI GCNGC 2 cut(s) 83, 187
Bme1390I CCNGG 2 cut(s) 48, 289
BmeT110I CYCGRG 1 cut(s) 626
BmrFI CCNGG 2 cut(s) 48, 289
BmsI GCATC 2 cut(s) 322, 583
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 201
BseBI CCWGG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 53, 201
BseMII CTCAG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 476
BseXI GCAGC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 53, 201
BsmFI GGGAC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 626
Bsp143I GATC 2 cut(s) 208, 535
BspACI CCGC 3 cut(s) 82, 319, 466
BspCNI CTCAG 1 cut(s) 506
BspHI TCATGA 1 cut(s) 243
BspPI GGATC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 466
BssMI GATC 2 cut(s) 208, 535
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 493
BstKTI GATC 2 cut(s) 211, 538
BstMBI GATC 2 cut(s) 208, 535
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 46, 287
BstV1I GCAGC 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 641
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 243
Csp6I GTAC 2 cut(s) 32, 308
CviAII CATG 4 cut(s) 35, 42, 244, 271
CviQI GTAC 2 cut(s) 32, 308
DdeI CTNAG 1 cut(s) 493
DpnI GATC 2 cut(s) 210, 537
DpnII GATC 2 cut(s) 208, 535
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 4 cut(s) 38, 45, 247, 274
FaiI YATR 9 cut(s) 36, 43, 63, 140, 201, 245, 272, 387, 522
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 34, 41, 243, 270
Fnu4HI GCNGC 2 cut(s) 82, 186
Fsp4HI GCNGC 2 cut(s) 82, 186
FspBI CTAG 1 cut(s) 407
GluI GCNGC 2 cut(s) 82, 186
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 1 cut(s) 288
Hin1II CATG 4 cut(s) 38, 45, 247, 274
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 6 cut(s) 26, 133, 389, 421, 610, 620
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 25, 418, 615
Hpy188III TCNNGA 5 cut(s) 115, 244, 302, 344, 495
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 5, 158, 222
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 3 cut(s) 274, 530, 639
HpyF3I CTNAG 1 cut(s) 493
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 4 cut(s) 38, 45, 247, 274
Kzo9I GATC 2 cut(s) 208, 535
LmnI GCTCC 3 cut(s) 290, 304, 463
LpnPI CCDG 5 cut(s) 33, 60, 301, 315, 480
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 322, 583
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 126, 380
MalI GATC 2 cut(s) 210, 537
MbiI CCGCTC 1 cut(s) 466
MboI GATC 2 cut(s) 208, 535
MboII GAAGA 5 cut(s) 130, 304, 353, 405, 619
MluCI AATT 4 cut(s) 75, 259, 265, 561
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 298, 421, 454, 622, 657
MseI TTAA 3 cut(s) 221, 357, 506
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 319, 371
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 48, 289
MvaI CCWGG 1 cut(s) 48
NciI CCSGG 1 cut(s) 289
NdeII GATC 2 cut(s) 208, 535
NlaIII CATG 4 cut(s) 38, 45, 247, 274
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 626
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 6 cut(s) 26, 133, 389, 421, 610, 620
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 2 cut(s) 83, 187
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 2 cut(s) 33, 309
RsaNI GTAC 2 cut(s) 32, 308
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 3 cut(s) 221, 357, 506
SatI GCNGC 2 cut(s) 82, 186
Sau3AI GATC 2 cut(s) 208, 535
ScrFI CCNGG 2 cut(s) 48, 289
SfaNI GCATC 2 cut(s) 322, 583
Sfr274I CTCGAG 1 cut(s) 626
SlaI CTCGAG 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 4 cut(s) 75, 259, 265, 561
SsiI CCGC 3 cut(s) 82, 319, 466
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 46, 287
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 95, 558, 627
TasI AATT 4 cut(s) 75, 259, 265, 561
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 6 cut(s) 26, 133, 389, 421, 610, 620
Tru1I TTAA 3 cut(s) 221, 357, 506
Tru9I TTAA 3 cut(s) 221, 357, 506
TscAI CASTG 1 cut(s) 641
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 17, 30, 402
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 641
XapI RAATTY 2 cut(s) 75, 561
XceI RCATGY 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 626
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.