Rmu_sc0010607.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010607.1
OG0000336
Physical Location & Seq
Forward (+)
11439 .. 11972
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010607.1_g000002.1.cds

Sequence Viewer

Length: 534 bp
atggcagtgcgcttggctgcatccttgggactggcatctgctcagaagcctgtggatcttcgtccaccaagaggagaagagctgcgtctgtctcagtcgtacttggtcagaaaactcttgacaactatggcttttagtaagtggtcgttcacgagtatgttccaatgtgggtggaggttgaatggacgatacacagtccaaaagcatgaagatcgctttatgttcatgctttctgatccttctgaccggaatcgaatcctcaggaggggaccatggggatttgatcgtgctcgtctggtgttgactccatttgacggggtcggcaccataaaggatgttcctctgactactctggcattctggatcaaagttcatggcctccaggtggatttccatactgactggtgccttcgacagatcggaagtgcattagggaggtttttgcaaaacgacacaatggagttggacgcaggaagggtccggattagagtggagatcgatggatttgacgcaacctgtgatcttgcggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

177

Amino Acids

20.22

Weight (kDa)

9.65

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 405
AccIII TCCGGA 1 cut(s) 480
AciI CCGC 1 cut(s) 527
AclWI GGATC 3 cut(s) 63, 230, 371
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 4 cut(s) 71, 265, 314, 385
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 3 cut(s) 63, 230, 371
Aor13HI TCCGGA 1 cut(s) 480
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 2 cut(s) 17, 82
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 269, 478
AvaII GGWCC 2 cut(s) 269, 478
AxyI CCTNAGG 1 cut(s) 260
BanI GGYRCC 2 cut(s) 323, 405
BauI CACGAG 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 4, 69
BccI CCATC 1 cut(s) 494
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 96
BisI GCNGC 3 cut(s) 18, 83, 528
BlsI GCNGC 3 cut(s) 19, 84, 529
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 2 cut(s) 269, 478
BmgT120I GGNCC 2 cut(s) 269, 478
BmiI GGNNCC 4 cut(s) 270, 325, 407, 479
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 29, 44
BpmI CTGGAG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 24, 272
BsaWI WCCGGW 2 cut(s) 246, 480
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 265, 314, 385
Bse1I ACTGG 2 cut(s) 36, 407
Bse21I CCTNAGG 1 cut(s) 260
BseAI TCCGGA 1 cut(s) 480
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 24, 272
BseGI GGATG 2 cut(s) 20, 340
BseLI CCNNNNNNNGG 4 cut(s) 71, 265, 314, 385
BseMII CTCAG 3 cut(s) 56, 107, 274
BseNI ACTGG 2 cut(s) 36, 407
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 4, 69
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 2 cut(s) 323, 405
BshVI ATCGAT 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 247, 481
BslFI GGGAC 2 cut(s) 42, 282
BslI CCNNNNNNNGG 4 cut(s) 71, 265, 314, 385
BsmAI GTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 42, 282
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 292
Bsp13I TCCGGA 1 cut(s) 480
Bsp143I GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 1 cut(s) 527
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 3 cut(s) 55, 106, 273
BspDI ATCGAT 1 cut(s) 498
BspEI TCCGGA 1 cut(s) 480
BspLI GGNNCC 4 cut(s) 270, 325, 407, 479
BspPI GGATC 3 cut(s) 63, 230, 371
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 323, 405
BsrI ACTGG 2 cut(s) 36, 407
BssECI CCNNGG 2 cut(s) 24, 272
BssMI GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 24, 272
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 42, 93, 260
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 20, 340
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 8 cut(s) 58, 214, 238, 286, 366, 420, 498, 523
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 4, 69
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 1 cut(s) 378
BsuTUI ATCGAT 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 20, 340
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 269, 478
ClaI ATCGAT 1 cut(s) 498
CseI GACGC 3 cut(s) 74, 476, 518
Csp6I GTAC 1 cut(s) 100
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 4 cut(s) 206, 226, 273, 374
CviJI RGCY 5 cut(s) 17, 49, 82, 131, 378
CviKI_1 RGCY 5 cut(s) 17, 49, 82, 131, 378
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 3 cut(s) 42, 93, 260
DpnI GATC 8 cut(s) 57, 213, 237, 285, 365, 419, 497, 522
DpnII GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 24, 272
Eco47I GGWCC 2 cut(s) 269, 478
Eco81I CCTNAGG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 24, 272
ErhI CCWWGG 2 cut(s) 24, 272
FaeI CATG 4 cut(s) 209, 229, 276, 377
FaqI GGGAC 2 cut(s) 42, 282
FatI CATG 4 cut(s) 205, 225, 272, 373
Fnu4HI GCNGC 3 cut(s) 18, 83, 528
FokI GGATG 2 cut(s) 7, 347
Fsp4HI GCNGC 3 cut(s) 18, 83, 528
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 18, 83, 528
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 378
HapII CCGG 2 cut(s) 247, 481
HgaI GACGC 3 cut(s) 74, 476, 518
HhaI GCGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 209, 229, 276, 377
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 3 cut(s) 250, 255, 304
HpaII CCGG 2 cut(s) 247, 481
Hpy166II GTNNAC 3 cut(s) 65, 150, 303
Hpy188I TCNGA 6 cut(s) 45, 110, 235, 244, 345, 422
Hpy188III TCNNGA 5 cut(s) 118, 151, 262, 361, 481
Hpy8I GTNNAC 3 cut(s) 65, 150, 303
HpyAV CCTTC 3 cut(s) 249, 419, 468
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 20, 428, 445
HpyF3I CTNAG 3 cut(s) 42, 93, 260
Hsp92II CATG 4 cut(s) 209, 229, 276, 377
HspAI GCGC 1 cut(s) 10
Kpn2I TCCGGA 1 cut(s) 480
Kzo9I GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
LguI GCTCTTC 1 cut(s) 72
Lsp1109I GCAGC 2 cut(s) 4, 69
LweI GCATC 2 cut(s) 29, 44
MalI GATC 8 cut(s) 57, 213, 237, 285, 365, 419, 497, 522
MboI GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
MboII GAAGA 3 cut(s) 50, 89, 221
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 292
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 7 cut(s) 65, 168, 258, 269, 351, 389, 429
MroI TCCGGA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 247, 481
MspR9I CCNGG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 383
NcoI CCATGG 1 cut(s) 272
NdeII GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
NlaIII CATG 4 cut(s) 209, 229, 276, 377
NlaIV GGNNCC 4 cut(s) 270, 325, 407, 479
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 250, 255
PflFI GACNNNGTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 19, 84, 529
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 270, 325, 407, 479
PspPI GGNCC 2 cut(s) 269, 478
PsuI RGATCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 72
SatI GCNGC 3 cut(s) 18, 83, 528
Sau3AI GATC 8 cut(s) 55, 211, 235, 283, 363, 417, 495, 520
Sau96I GGNCC 2 cut(s) 269, 478
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 292
SetI ASST 5 cut(s) 84, 179, 387, 440, 518
SfaNI GCATC 2 cut(s) 29, 44
SinI GGWCC 2 cut(s) 269, 478
SmiMI CAYNNNNRTG 1 cut(s) 155
SsiI CCGC 1 cut(s) 527
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 24, 272
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 253, 412, 498
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 250, 255
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 17, 82
TspDTI ATGAA 3 cut(s) 214, 222, 362
TspRI CASTG 1 cut(s) 12
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 269, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.