Rh6AG089300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000336
Physical Location & Seq
Forward (+)
13233048 .. 13233296
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG089300.1

Sequence Viewer

Length: 249 bp
ATGTCAGCCAAGGTGGACGCTGCACCAATGCTGAGGTCATTGTTGGTTTTTGGGGCTCAAGTGCAAACTGGGGAAACTCCTAGCCTAGCTAGGTTTGCTGGAACATCGGTGACACAGGTCCGAACTTGTAGAGATATCCATATCTGGTTTATGTCGGATCGTAGTGCTGCTGGCTGTAAAAACTTAGGCCCAGACCGTGCTGGTGCTGGGATAGAGGCTGGAGGAGTGCAAGTGGTGACTGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.51

Weight (kDa)

7.84

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AlwI GGATC 1 cut(s) 165
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 20, 167
AspS9I GGNCC 2 cut(s) 118, 188
AsuHPI GGTGA 2 cut(s) 121, 247
AvaII GGWCC 1 cut(s) 118
BanII GRGCYC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 7, 154
BfaI CTAG 3 cut(s) 81, 86, 90
BisI GCNGC 2 cut(s) 21, 168
BlsI GCNGC 2 cut(s) 22, 169
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 118, 188
BmrI ACTGGG 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bse1I ACTGG 2 cut(s) 73, 244
BseDI CCNNGG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 73, 244
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 7, 154
BseYI CCCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 6
BshFI GGCC 1 cut(s) 189
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 165
BsrI ACTGG 2 cut(s) 73, 244
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 32, 184
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstPAI GACNNNNGTC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 7, 154
BsuRI GGCC 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 118, 188
CseI GACGC 1 cut(s) 26
CviJI RGCY 7 cut(s) 8, 56, 84, 89, 174, 189, 218
CviKI_1 RGCY 7 cut(s) 8, 56, 84, 89, 174, 189, 218
DdeI CTNAG 2 cut(s) 32, 184
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 118
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 9
FaiI YATR 2 cut(s) 141, 152
Fnu4HI GCNGC 2 cut(s) 21, 168
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 21, 168
FspBI CTAG 3 cut(s) 81, 86, 90
GluI GCNGC 2 cut(s) 21, 168
GsaI CCCAGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 189
HgaI GACGC 1 cut(s) 26
HphI GGTGA 2 cut(s) 121, 247
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 122, 157
Hpy8I GTNNAC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 23, 64, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 32, 184
Kzo9I GATC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 7, 154
MaeI CTAG 3 cut(s) 81, 86, 90
MaeIII GTNAC 3 cut(s) 109, 235, 242
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 3 cut(s) 27, 208, 215
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 157
NmuCI GTSAC 3 cut(s) 109, 235, 242
PkrI GCNGC 2 cut(s) 22, 169
PshAI GACNNNNGTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 206
PspPI GGNCC 2 cut(s) 118, 188
SatI GCNGC 2 cut(s) 21, 168
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 118, 188
SduI GDGCHC 1 cut(s) 58
SetI ASST 5 cut(s) 15, 38, 91, 95, 120
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
SspMI CTAG 3 cut(s) 81, 86, 90
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 197
TseFI GTSAC 3 cut(s) 109, 235, 242
TseI GCWGC 2 cut(s) 20, 167
Tsp45I GTSAC 3 cut(s) 109, 235, 242
VpaK11BI GGWCC 1 cut(s) 118
XspI CTAG 3 cut(s) 81, 86, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.