Rh1AG264100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000336
Physical Location & Seq
Reverse (-)
49035633 .. 49036096
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG264100.1

Sequence Viewer

Length: 231 bp
ATGGGATTAGCAGTGGTGCAGACTCCACAAGAAGTTACAAAGAAACGTAGGAGATCAAGAGGTGCAAAGAACAAGGCAAAGGTCGAGGTTAATGCTTTTTATATCAAGATGTCACCAATGAAGCAGGTTAAGACTCCAAAGAAAGTGGAGAAACTAGTCAATGGATTGTCGGAGTTTACTACTCTATCTGATGTGGGCATCTCCACCCCTTCGAATGGGAAGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.42

Weight (kDa)

10.38

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 215
AhlI ACTAGT 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 115
BmsI GCATC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 212
Bsp143I GATC 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 212
BssMI GATC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 212
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
FaiI YATR 1 cut(s) 102
FspBI CTAG 1 cut(s) 155
HinfI GANTC 2 cut(s) 22, 133
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 172, 190
Hpy188III TCNNGA 2 cut(s) 57, 106
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 214, 219
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 19, 65
HpySE526I ACGT 1 cut(s) 46
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 1 cut(s) 110
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 34, 111
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MlyI GAGTC 2 cut(s) 16, 127
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 53, 79
MseI TTAA 2 cut(s) 90, 129
NdeII GATC 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 111
NspV TTCGAA 1 cut(s) 212
PleI GAGTC 2 cut(s) 16, 127
PpsI GAGTC 2 cut(s) 16, 127
SaqAI TTAA 2 cut(s) 90, 129
Sau3AI GATC 1 cut(s) 53
SchI GAGTC 2 cut(s) 16, 127
SetI ASST 5 cut(s) 49, 64, 84, 90, 129
SfaNI GCATC 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 212
SgeI CNNG 7 cut(s) 41, 69, 85, 97, 118, 137, 167
SpeI ACTAGT 1 cut(s) 154
SspMI CTAG 1 cut(s) 155
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 84, 212
Tru1I TTAA 2 cut(s) 90, 129
Tru9I TTAA 2 cut(s) 90, 129
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 18
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.