Rh2AG232700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000336
Physical Location & Seq
Forward (+)
25041481 .. 25044305
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG232700.1

Sequence Viewer

Length: 330 bp
ATGGTGATAAGTCCTTTGCGAAAGTTAGGGCGCGCAATCCCGTTTACAACACCAATGAAAGAGAAACCAGATCCATGCGCACGGGCTCTATATGTTGGGATACCATGTGCTGGACCACCATTGGCGGAGCCATTGAGGGCAGAGACTTCATTTGCACAGCGCAATCTTGAGAGCGCGTTGGCCCGAGTCGAGAAGACTCATTCTGTTGGGTTGGGGATAGTTTTTAGAGCTCAGGTTGTTGTTGTGGATGCCTTGGGGCTAGCCAGGTTTGTTACAACACCGGTGCATAAACCTAAGGCATGCAGTGTGATCCACATCAGGCCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.72

Weight (kDa)

10.14

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000336)

Species Orthologous Gene IDs
malus_domestica MD05G1024100.v1.1
rosa_chinensis RchiOBHm_Chr2g0152291 RchiOBHm_Chr4g0387411
rosa_laevigata RLG00000009698 RLG00000009699 RLG00000009700 RLG00000023615 RLG00000024265 RLG00000034445 RLG00000036567
rosa_multiflora Rmu_co8268067.1_g000001 Rmu_co8313555.1_g000001 Rmu_co8324697.1_g000001 Rmu_sc0000318.1_g000023 Rmu_sc0000342.1_g000016 Rmu_sc0000447.1_g000010 Rmu_sc0000528.1_g000009 Rmu_sc0000539.1_g000060 Rmu_sc0000929.1_g000023 Rmu_sc0001493.1_g000081 Rmu_sc0001674.1_g000003 Rmu_sc0001791.1_g000023 Rmu_sc0001822.1_g000005 Rmu_sc0001822.1_g000033 Rmu_sc0002061.1_g000010 Rmu_sc0002286.1_g000012 Rmu_sc0002979.1_g000009 Rmu_sc0003158.1_g000016 Rmu_sc0003221.1_g000001 Rmu_sc0003641.1_g000029 Rmu_sc0003742.1_g000012 Rmu_sc0003814.1_g000004 Rmu_sc0003823.1_g000005 Rmu_sc0004002.1_g000005 Rmu_sc0004564.1_g000005 Rmu_sc0005415.1_g000003 Rmu_sc0006050.1_g000025 Rmu_sc0006555.1_g000002 Rmu_sc0009954.1_g000020 Rmu_sc0010421.1_g000007 Rmu_sc0010607.1_g000002 Rmu_sc0011044.1_g000005 Rmu_sc0011497.1_g000015 Rmu_sc0014532.1_g000004 Rmu_sc0014745.1_g000005 Rmu_sc0014821.1_g000001 Rmu_sc0015038.1_g000002 Rmu_sc0015454.1_g000004 Rmu_sc0019663.1_g000002 Rmu_sc0027475.1_g000003 Rmu_sc0028826.1_g000002 Rmu_ssc0000117.1_g000019 Rmu_ssc0000175.1_g000034
rosa_roxburghii Rroxscaffold_3G00237080 Rroxscaffold_4G00288290 Rroxscaffold_6G00397510
rosa_rugosa Rorug01G0035000 Rorug01G0190900 Rorug01G0208500 Rorug01G0208600 Rorug01G0208600 Rorug01G0344900 Rorug01G0479500 Rorug01G0479600 Rorug02G0230400 Rorug02G0320900 Rorug02G0433300 Rorug03G0147400 Rorug03G0169700.1 Rorug03G0169800 Rorug03G0198300 Rorug04G0022900 Rorug04G0064600 Rorug04G0322100 Rorug04G0388900 Rorug05G0153200 Rorug05G0231600 Rorug05G0231700 Rorug05G0231800 Rorug05G0276200 Rorug05G0292400 Rorug05G0314700 Rorug06G0092000 Rorug06G0260900 Rorug06G0273600 RorugPtG0003200
rosa_samantha Rh1AG264100 Rh1AG292500 Rh1AG423800 Rh2AG098000 Rh2AG232700 Rh2AG361100 Rh2AG372900 Rh2BG099200 Rh2BG246000 Rh2BG260600 Rh2BG378400 Rh3BG142300 Rh3BG252900 Rh3BG267700 Rh3DG302400 Rh5BG059800 Rh5BG320000 Rh5BG530500 Rh6AG089300 Rh6AG089400 Rh6AG127400 Rh6AG376700 Rh7CG488700 Rh7DG265900
rosa_wichuraiana Rw2G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 79
AccB7I CCANNNNNTGG 1 cut(s) 110
AccII CGCG 2 cut(s) 33, 176
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 65, 304
AfiI CCNNNNNNNGG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 280
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 65, 304
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 180, 320
AsiGI ACCGGT 1 cut(s) 280
AspLEI GCGC 5 cut(s) 33, 35, 80, 162, 176
AspS9I GGNCC 2 cut(s) 113, 181
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 294
BanII GRGCYC 2 cut(s) 88, 232
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 265
BciVI GTATCC 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 260
BfuI GTATCC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 113, 181
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 238
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 314
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 245
BsePI GCGCGC 1 cut(s) 31
Bsh1236I CGCG 2 cut(s) 33, 176
BshFI GGCC 2 cut(s) 182, 322
BshTI ACCGGT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 182, 322
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 88, 232
Bsp143I GATC 2 cut(s) 70, 309
BspACI CCGC 1 cut(s) 125
BspANI GGCC 2 cut(s) 182, 322
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 2 cut(s) 33, 176
BspLI GGNNCC 1 cut(s) 129
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 65, 304
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 252
BssHII GCGCGC 1 cut(s) 31
BssMI GATC 2 cut(s) 70, 309
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 265
BstC8I GCNNGC 4 cut(s) 33, 261, 301, 324
BstDEI CTNAG 2 cut(s) 231, 294
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 2 cut(s) 33, 176
BstHHI GCGC 5 cut(s) 33, 35, 80, 162, 176
BstKTI GATC 2 cut(s) 73, 312
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 70, 309
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 263
BstUI CGCG 2 cut(s) 33, 176
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 294
BsuI GTATCC 1 cut(s) 93
BsuRI GGCC 2 cut(s) 182, 322
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 33, 261, 301, 324
CfoI GCGC 5 cut(s) 33, 35, 80, 162, 176
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 113, 181
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 3 cut(s) 75, 105, 300
CviJI RGCY 7 cut(s) 86, 130, 182, 230, 259, 263, 322
CviKI_1 RGCY 7 cut(s) 86, 130, 182, 230, 259, 263, 322
DdeI CTNAG 2 cut(s) 231, 294
DpnI GATC 2 cut(s) 72, 311
DpnII GATC 2 cut(s) 70, 309
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 88, 232
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 88, 232
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 78, 108, 303
FaiI YATR 6 cut(s) 76, 91, 93, 106, 288, 301
FatI CATG 3 cut(s) 74, 104, 299
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 2 cut(s) 88, 232
FspAI RTGCGCAY 1 cut(s) 79
FspBI CTAG 1 cut(s) 260
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 5 cut(s) 32, 34, 79, 161, 175
HaeIII GGCC 2 cut(s) 182, 322
HapII CCGG 1 cut(s) 281
HhaI GCGC 5 cut(s) 33, 35, 80, 162, 176
Hin1II CATG 3 cut(s) 78, 108, 303
Hin6I GCGC 5 cut(s) 31, 33, 78, 160, 174
HinP1I GCGC 5 cut(s) 31, 33, 78, 160, 174
HinfI GANTC 2 cut(s) 186, 196
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 167, 190
Hpy8I GTNNAC 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 155, 286, 303
HpyF3I CTNAG 2 cut(s) 231, 294
Hsp92II CATG 3 cut(s) 78, 108, 303
HspAI GCGC 5 cut(s) 31, 33, 78, 160, 174
Kzo9I GATC 2 cut(s) 70, 309
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 81, 96, 218, 250, 277, 294, 304
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 72, 311
MboI GATC 2 cut(s) 70, 309
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 88, 232
MlyI GAGTC 2 cut(s) 190, 195
MnlI CCTC 1 cut(s) 129
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 2 cut(s) 33, 176
NdeII GATC 2 cut(s) 70, 309
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 3 cut(s) 78, 108, 303
NlaIV GGNNCC 1 cut(s) 129
NsbI TGCGCA 1 cut(s) 79
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PauI GCGCGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 280
PleI GAGTC 2 cut(s) 190, 194
PpsI GAGTC 2 cut(s) 190, 194
Psp124BI GAGCTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 2 cut(s) 113, 181
PsuI RGATCY 1 cut(s) 70
PteI GCGCGC 1 cut(s) 31
SacI GAGCTC 1 cut(s) 232
Sau3AI GATC 2 cut(s) 70, 309
Sau96I GGNCC 2 cut(s) 113, 181
SchI GAGTC 2 cut(s) 190, 195
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 2 cut(s) 88, 232
SetI ASST 4 cut(s) 232, 237, 269, 295
SfaNI GCATC 1 cut(s) 238
SgrAI CRCCGGYG 1 cut(s) 280
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SphI GCATGC 1 cut(s) 303
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 232
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 252
TaqI TCGA 1 cut(s) 189
TscAI CASTG 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 71, 138
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 113
XceI RCATGY 1 cut(s) 303
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.